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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00400
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 696 results. Now displaying 1 of 14 with 50 rows per page. This search has taken 0.214s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2088070.1
LjNena WD40 repeat nucleoporin similar to SEH1 [Lotus japonicus] gi|300392452|dbj|BAJ10726.1| chr2 31459136 31461416 +
2 domain predictions
1 GO term
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
2 domain predictions
1 GO term
Lj0g3v0006089.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502165775|ref|XP_004513686.1| chr0 2290103 2296009 -
2 domain predictions
1 GO term
Lj0g3v0012509.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 4734729 4738854 +
2 domain predictions
1 GO term
Lj0g3v0039969.1
n.a. PREDICTED: protein transport protein SEC31-like isoform 2 [Glycine max] gi|356531635|ref|XP_003534382.1| chr0 12974186 12979269 +
2 domain predictions
1 GO term
Lj0g3v0057749.1
n.a. PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cicer arietinum] gi|502141015|ref|XP_004504409.1| chr0 18960587 18966505 -
2 domain predictions
1 GO term
Lj0g3v0059659.2
n.a. PREDICTED: nucleolar protein 10-like [Glycine max] gi|356520649|ref|XP_003528973.1| chr0 19772601 19779451 -
2 domain predictions
1 GO term
Lj0g3v0060179.1
n.a. PREDICTED: SEC12-like protein 2-like [Glycine max] gi|356521544|ref|XP_003529414.1| chr0 20011521 20018001 +
2 domain predictions
1 GO term
Lj0g3v0060179.2
n.a. PREDICTED: SEC12-like protein 2-like [Glycine max] gi|356521544|ref|XP_003529414.1| chr0 20011521 20018001 +
2 domain predictions
1 GO term
Lj0g3v0060289.1
n.a. PREDICTED: topless-related protein 3-like [Glycine max] gi|356576819|ref|XP_003556527.1| chr0 20044577 20048517 -
2 domain predictions
1 GO term
Lj0g3v0060299.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20048466 20053713 -
2 domain predictions
1 GO term
Lj0g3v0060309.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20060674 20069782 -
2 domain predictions
1 GO term
Lj0g3v0060589.1
n.a. PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max] gi|356550442|ref|XP_003543596.1| chr0 20207044 20213089 +
2 domain predictions
1 GO term
Lj0g3v0069329.1
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502136437|ref|XP_004502686.1| chr0 25001361 25006580 -
2 domain predictions
1 GO term
Lj0g3v0069329.2
n.a. PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] gi|502136437|ref|XP_004502686.1| chr0 25001361 25006580 -
2 domain predictions
1 GO term
Lj0g3v0069539.1
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
2 domain predictions
1 GO term
Lj0g3v0069539.2
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
2 domain predictions
1 GO term
Lj0g3v0069539.3
n.a. PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] gi|502155265|ref|XP_004510012.1| chr0 25149280 25154621 +
2 domain predictions
1 GO term
Lj0g3v0096189.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502122681|ref|XP_004497861.1| chr0 40546100 40547621 +
2 domain predictions
1 GO term
Lj0g3v0096849.1
n.a. Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Medicago truncatula] gi|357438041|ref|XP_003589296.1| chr0 40873446 40876108 -
2 domain predictions
1 GO term
Lj0g3v0101969.1
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum] gi|502081240|ref|XP_004486807.1| chr0 43286011 43294414 -
2 domain predictions
1 GO term
Lj0g3v0101969.2
n.a. PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cicer arietinum] gi|502081240|ref|XP_004486807.1| chr0 43286011 43293409 -
2 domain predictions
1 GO term
Lj0g3v0109259.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] gi|356552535|ref|XP_003544622.1| chr0 47277284 47286300 -
2 domain predictions
1 GO term
Lj0g3v0109259.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] gi|356552537|ref|XP_003544623.1| chr0 47277284 47286300 -
2 domain predictions
1 GO term
Lj0g3v0109589.1
n.a. PREDICTED: nucleoporin SEH1-like [Glycine max] gi|356539408|ref|XP_003538190.1| chr0 47453568 47454316 +
2 domain predictions
1 GO term
Lj0g3v0112299.1
n.a. PREDICTED: serine-threonine kinase receptor-associated protein-like [Cicer arietinum] gi|502174785|ref|XP_004515599.1| chr0 48844914 48853229 -
2 domain predictions
1 GO term
Lj0g3v0114209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi|356554527|ref|XP_003545597.1| chr0 50026700 50038584 +
2 domain predictions
1 GO term
Lj0g3v0114859.1
n.a. PREDICTED: SEC12-like protein 2-like [Glycine max] gi|356521544|ref|XP_003529414.1| chr0 50406691 50410699 -
2 domain predictions
1 GO term
Lj0g3v0114859.2
n.a. PREDICTED: SEC12-like protein 2-like [Glycine max] gi|356521544|ref|XP_003529414.1| chr0 50406691 50410699 -
2 domain predictions
1 GO term
Lj0g3v0173139.1
n.a. Pre-mRNA-processing factor [Medicago truncatula] gi|357440851|ref|XP_003590703.1| chr0 83225021 83228730 -
2 domain predictions
1 GO term
Lj0g3v0174599.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356534740|ref|XP_003535910.1| chr0 84232134 84248401 +
2 domain predictions
1 GO term
Lj0g3v0174599.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X6 [Cicer arietinum] gi|502183143|ref|XP_004517072.1| chr0 84232134 84248401 +
2 domain predictions
1 GO term
Lj0g3v0174599.3
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356534740|ref|XP_003535910.1| chr0 84232134 84248401 +
2 domain predictions
1 GO term
Lj0g3v0174599.4
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X6 [Cicer arietinum] gi|502183143|ref|XP_004517072.1| chr0 84232134 84248401 +
2 domain predictions
1 GO term
Lj0g3v0201979.1
n.a. PREDICTED: angio-associated migratory cell protein-like [Glycine max] gi|356576129|ref|XP_003556186.1| chr0 99940166 99944107 -
2 domain predictions
1 GO term
Lj0g3v0230879.1
n.a. PREDICTED: WD repeat-containing protein 18-like [Glycine max] gi|356526563|ref|XP_003531886.1| chr0 119682494 119687822 -
2 domain predictions
1 GO term
Lj0g3v0232589.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 120725639 120728473 +
2 domain predictions
1 GO term
Lj0g3v0235829.1
n.a. GTP binding protein beta 1 isoform 1 [Theobroma cacao] gi|508706146|gb|EOX98042.1| chr0 122184006 122186029 +
2 domain predictions
1 GO term
Lj0g3v0246579.1
n.a. Periodic tryptophan protein-like protein [Medicago truncatula] gi|357507105|ref|XP_003623841.1| chr0 127772333 127778039 -
2 domain predictions
1 GO term
Lj0g3v0247069.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr0 128046719 128053091 +
2 domain predictions
1 GO term
Lj0g3v0249849.1
n.a. WD-40 repeat family [Medicago truncatula] gi|358349511|ref|XP_003638779.1| chr0 129506695 129509319 +
2 domain predictions
1 GO term
Lj0g3v0251579.1
n.a. PREDICTED: elongator complex protein 2-like [Glycine max] gi|356575590|ref|XP_003555922.1| chr0 130515247 130520416 -
2 domain predictions
1 GO term
Lj0g3v0253949.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr0 131764729 131765579 -
2 domain predictions
1 GO term
Lj0g3v0257609.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502114759|ref|XP_004495043.1| chr0 133731146 133736152 -
2 domain predictions
1 GO term
Lj0g3v0260259.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502157475|ref|XP_004510889.1| chr0 135216097 135217608 -
2 domain predictions
1 GO term
Lj0g3v0269979.1
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
2 domain predictions
1 GO term
Lj0g3v0269979.2
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
2 domain predictions
1 GO term
Lj0g3v0283109.1
n.a. WD-repeat cell cycle regulatory protein [Glycine max] gi|351727655|ref|NP_001237168.1| chr0 146731979 146736047 -
2 domain predictions
1 GO term
Lj0g3v0283109.3
n.a. PREDICTED: protein FIZZY-RELATED 3-like [Glycine max] gi|356569370|ref|XP_003552875.1| chr0 146731979 146736047 -
2 domain predictions
1 GO term
Lj0g3v0291969.1
n.a. PREDICTED: cleavage stimulation factor subunit 1-like [Glycine max] gi|356519146|ref|XP_003528235.1| chr0 151464789 151471597 -
2 domain predictions
1 GO term