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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0096800 |
| Transcript ID | LotjaGi3g1v0096800.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G54520.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q64LD2|WDR25_HUMAN WD repeat-containing protein 25; TrEMBL-Plants: tr|A0A072TR58|A0A072TR58_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi3g1v0096800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12036656..12042159) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATACTGCGCTGAATCGATGATCGAGCCAAAGATGGATGGACCCTTGTTATAAACCAAAAGGAAAAACAATATAACC CCCGAGAAGAAGAGAAGAAGGAGGTGAGAGGCAGCAGCCAAGAGGAGCAAAGATGGATCTCCTGTGCGACGCGTATTCGA ATGCTTCAGACGAAGAAAGAGAGGAACAACCCAAACGACACAAGCCATCATCAAACTCTTCTTCAAACCCACCAAAACCC CATCTCTTCATTCCTAATCCTCACTACCCTCAAACACCACAACCTCCAATCCCTGGAACCTACGTCTCCAAACGACAACG CGCGTCGATGGGAAACCTCGCCGCTTCTCTCCCTAACCCTGATCCCGCTCCTTCTTCATTCATACGAACAGGTACATCAT CAATTTTGCCAACTACTGAAACTGTTTCAATTTTGATGAAGAATTTAGTTTTCGTGTTTAACTTGTTACTCTATTGTCTA ATCTTGTGTTGATTTGATGAGGGTTAAAATTATTACCTGAGATGTTAAAATGATGTGATGGTGCTACCTTTATTTGTTGT ATGTATAGATGTTATATATTATATTTCTAACATGCCCCCTCACGCGAGAGCCCATTTGGGCTTGAAGCGTGGATAATGCA CAGACCCACCTACCATGTGCAGATGTGCTACATTCATTAAACTTTTTAATAATGGGGGCAACATGGGCATAGAGGCTCTG ATACCAGGTCAATAGAAAAGTTGCAGCTTAATTTTGAATCATGCAACGTTATCATTTCAATATCATATGATGAGTGATGA GCTTGCATAATTTACAATGTCTTTGTGTCATCTTACACAGACTTTTCTCGTCGTAGGTTTTTTGGACATAGGTGTGTTGG ATGTTTTAATGCTTTTATTTACTCTCCAGCTTATGTGTTCTACTTTTAGTCATAGGTAGTGACCACTACTCTTACCTTAT TCTTGTTCATAAATAGGGAGTATCTTGGATGTTGATACACCCCATAGCATTTTATCATTGCTGAAAAGCAAATCAAAGGG TCATCAAAACCTAAACCCAAGATCTGAAAAGCTATCTGCAACTCTATATGGCCATACAAAAGCTGTCAGTGCTATACATT GGTCATCAACTCATGGTAATTTTCTTTAACTGTTTCTGGATGTATTGTGTTACATTTAATGTATAAAGCAGGTATTTATT CAAAGCTAGAATATTTTCGAAATCAAAATATTTAAGTGCTTACACTCCCACAATGGAGAAGAGAGACAGAGCAAGAGATA TATGCTTGTTGTATATGTTACTAGTATTGATCTGTTCATTAAAGTTAGCTTGCAGCTCACCTCCTTGCATCTGCTGCGAT GGATCATTTGGTTTGCATATGGAATGTATGGAGTAGAGATCAGAAGAAAGCATGTGTGCTAAACTTCCATAATGCTGCCG TGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTAGTTGATGTT GAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATCAAATCATTGGAGTTATAAAGTTCCACCCCGATAATTCAAGTCT CTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTATGGGATATTAGAACTGGCAAAGTAGTGCATAACTATGATCGGA ATTTAGGACCGATTCTTGATGTTGAATTTACAACGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAAT CTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCACGACAGGTACCATTGTCTAATCAGGTGAGTAAATTCTCTACAAT TTTTTATATTTTAATTTGTAGATATCATGAATAATTATGTTTTAGTATTAACTTTACTATTTTGCGTTGACATGAAGTGT GAATATTTAATATTTTAAGCTACTTTTATATTTATTTTAAACTAAAGCATTATCATGTCAAAACATGAAATTAAAAAAAT ATTGGAAATTAGTGTGAAAATTGCTTTTCTGAGACTAGGTTTGAGTCTTACATCTCACGCTCATTTTATAATAGATGAAC CACCTCAAGCAATGGATGGTGATTGGTTCAAATGGTTTGACTAGTTTGACACTGTTTAAATCAATGATTCTGAGATGCCC TCAGGTTCTATAGGCTTGACCAGACCATCTATAGATCTGTTTGGTGGTTGAACCAGACCAACCAGTCCTATCTGGTTTCG AAACAATGATTCTATCAATGTTGGAGTAAACCCTCATTTTCATCTCCAATGTTTGTAAGGGTCATCAAATCAATCTCTAT ACTAAAGGAATACAAAAAATGTCCTTAACCTATTCTTTTGAAGACTGATGTGACAGACAAAAAAAGTTGAGAACTAGTAT GAATGATGAGAGTGTAGTTTGGGGGATAAATTCTATCATGTTAAGTCTTGGGATAAATTTGATGTCCATTACACATTTTA GGGACGAATCGGGTGATTCACTCATGTTTGCCGAAGAGAGTTGATGAAGAAAGTAGTATGAATAAACCACCAAATTTGTC CATATCGTACCACTGACTTAAGAGTCGTCCTTAGCCTCAAGAAAGTCATGTTAGTCCCAAATTGACTCATTGCAAAGACT AATGTAATGGATGTTTTTAAATGTTGGGGACTTAAAATAGATTTTCTTTATGTTAGGGGCCAATTCAAAGTTTGTAGGAA ATTATGGAATGAATTGGGTTATTTACTCTAGTATTATTCAGTACTTAGTCAATCCCAGATAGTGGTGCACAACGGCTGAC ACCAAAAGTGCTAGTGTTATAGCGCATATTAGGATGGTCGCTATGCTGAATTTTTTATGTTGTTTCTGTAATTTATACTA TATACAAAAATAGATACTCAAATGATGAAAAATACTCAAAATTCATAGCATTGACAATTAACAATTAAAATTCATTGGTG TCTTAAGAAAAGATCACCCCTTTAGCGGTCCTGACTCCTGACACCAAACAGCATATCAACCTGGAAGAGCGGCCAAGGGC GATTATGTGCCGTGATGCTAAACCCTGATAAGCCATTCAAAGATTTGCCTCAAATGTTTTTTTCTTTTCTCCGACATGTA TTTGACAACACAACAATTATAATAATAATTGAATCAACATCTAAGGAGGTGTAATGTACTAAACACCTTTGGAAGGAATA CTTCAGCAGAAAAGGCACAATGTTCTTACATCTGAAGTTCCTCCTCAAAGTCCATGTTTGTTTCTTTTCTAATTTATGAA AATAACTGCCTTTTTTAGGTTTAATTTGAGATTATTGGCTTCTTTACCCTCCCTTTTATTGGCACCAAAAATTACCCACC CACCAGAGCCCTTATTGCAATGCAAGTTAAACTTTCCAGACTCAATTCTTCCCAATCAAGAATCTTGCAGCTCCCATCAG GGTTCTTGGATTTTCCTCTCTGCCTTTAATTCTCTGTTCCAGCTCCTGAACCCTTTCTTCTGAACCCTCCATTCTTGAGA GAACCGTGAATAGCTCCTAGTATCTTCAGAGCTCTAATGCCAACAGCTAACGAAATAAGCTCTGATAACCCGCTTGTTCT TCATAAGATTAAAAATAGAGTGGTTCTGTGTTGTAGTTATTTTTATATCTTTCTCACATAAGCTACTAATTTTGGCTGAT GAGAAAAGCACTAAACTTATTGTGAAGTTTCTGTATTTTTATTAACTTGTCATAATTATTTAAAAAGAATTCATCTAATT AAAAAACACAAACAAACGGACCCCTAATTGGGGTAGCTGCTACACCTTTCTACTCTCAAAACACCCATGAAACCTTTAGT TTTGCTTGCAACTTAGAAAGTCAAAGTCTCTTACAGTTTTACTACTATCGAGCTGATGCTTCTTATTCATCACAGTGTTC ACTGTTATAGAAGTATTACTCAAGTTACATGTTACAAGCTGTGAAATGCCTATATGTTTATATTGTAGGCACTTACAATT TACAATTTTTACATTGTCATTGCCTACACATCAGATTCAGTTACCATCTGTTTTTTCGAGTCTGGCTCCTCTGAAGTGAG TGACTCACTTTAGATTGTAAAGTAAGTCATAATGACCATTGATGAGTGGCTTTATTGACTTTTCAAAGTAGGTAATCACT ATTAATGTTTGTGATGAGTTACTTTACCCTCTAAAATGATCTCTCAATTTAGAGGAGCCAAAACCCTGTTTTTTATCTAA ATTTTATTCATGTAAACTTGTTTTCACTCTAGCGACCTATCATTTGGTAAAATATCGGTTTTCTTGATGGTTGTTAGGCA ATAATATTAATGCAGTAAATGAATGTTTCAAAGAGGACAATAGTTTGTAAAATACAACATTGTTTTCAGTAACAAATAAT TTTAAAGATCTCATTTTCCTCTTCCAATGACTTATCCCTGAAATAGCTGAGATAAAATTGAAGCCAAATGCACTGCGGTG CGTTGGCTGGAATATCTTCGATGCTTAAAATCTTCCATTACATTAATTATGTTTGATTATCCCTGAATTTTCCTTTCCTT CTTTCCCTTTATTCTGAGTAATATAGTTTCTTTATATAGAACACATTCGGCTGTAATGCGTCTCTCTCTGAAAGTTTTAG GGATTTCTGATTTATGTACATGGTTTAGATATATGTTATAACATTATTCAGGTCATTTCTGGTGCTACATGCATTTTGGG AGTGTATCACTTTGGTCCTTTGGTCCTCTGCATCTACAAACTTTGTTATGAGGGCGTGAATTTAGATTTCAACTGACAAC ATATTCTGCTTCTGAATCAGGTTTATGTAGAAGCTTATACCTGTCCCTGTGTAAGGTGCCACCCATTTGATCCTGTTTTT GTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGGTACCACGCCGCCTTACAGACTCAACAAATACAAGAGATATGA GAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATTTCAGCAGGGATGGCAAGAAACTTGCATCTGGCTCTTCAGATG GTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTTGTGAAGAAAATCAAGGCCTTTGACCAAGCATGCATAGACGTT TCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATGCTCATGGGATGGAGGTATTTTGGTATTTGAGTAGAGTTACCT ATTGTCATCCCAATTCCAGGGTAGTGAAGGGTTATGCATTTAGTTACCTGCAAGAAAATGGTTTGGAATCCGAAAGGAAA GGAAAAGAGCTTTCCCTCAGTTTATGTAGGCTGTTTCTGTGTTGTTAGTTGTTACGGATACTTAATGATTATGAAAACAT GTGTATTCGTTGCCTAAATGTTTGCTTAACACTTTTTAATTTTAGTTACTATGAGAGAAAATGATTTGTAGGGATCAGCG TAATGTGTTTGGGTTATCCCTCCTAAGTGGGGCCCAACTTTATTTTTTTCTTTTTTTGGTCACT
CDS sequence (LotjaGi3g1v0096800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATTTGGTTTGCATATGGAATGTATGGAGTAGAGATCAGAAGAAAGCATGTGTGCTAAACTTCCATAATGCTGC CGTGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTAGTTGATG TTGAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATCAAATCATTGGAGTTATAAAGTTCCACCCCGATAATTCAAGT CTCTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTATGGGATATTAGAACTGGCAAAGTAGTGCATAACTATGATCG GAATTTAGGACCGATTCTTGATGTTGAATTTACAACGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCA ATCTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCACGACAGGTACCATTGTCTAATCAGGTTTATGTAGAAGCTTAT ACCTGTCCCTGTGTAAGGTGCCACCCATTTGATCCTGTTTTTGTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGG TACCACGCCGCCTTACAGACTCAACAAATACAAGAGATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATT TCAGCAGGGATGGCAAGAAACTTGCATCTGGCTCTTCAGATGGTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTT GTGAAGAAAATCAAGGCCTTTGACCAAGCATGCATAGACGTTTCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATG CTCATGGGATGGAGGTATTTTGGTATTTGAGTAG
Protein sequence (LotjaGi3g1v0096800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHLVCIWNVWSRDQKKACVLNFHNAAVKDVKWSQQGLFLLSCGYDCTSRLVDVEKGIETQVFREDQIIGVIKFHPDNSS LFLSGGSKGHIKLWDIRTGKVVHNYDRNLGPILDVEFTTNGKQFISSSDVSGSNLSENSIIVWDVSRQVPLSNQVYVEAY TCPCVRCHPFDPVFVAQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNFSRDGKKLASGSSDGSVYLYDYHSSKV VKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 277 | 277 | 1.9E-156 | – | |
| ProSiteProfiles | 1 | 277 | 277 | 19.143 | ||
| Gene3D | 1 | 277 | 277 | 1.2E-59 | ||
| SUPERFAMILY | 2 | 276 | 275 | 5.83E-48 | ||
| SMART | 14 | 53 | 40 | 9.7E-4 | ||
| Pfam | 20 | 51 | 32 | 0.024 | ||
| SMART | 56 | 95 | 40 | 0.003 | ||
| ProSiteProfiles | 62 | 104 | 43 | 10.876 | ||
| Pfam | 72 | 95 | 24 | 0.013 | ||
| SMART | 98 | 144 | 47 | 0.83 | ||
| SMART | 195 | 234 | 40 | 0.024 | ||
| Pfam | 200 | 234 | 35 | 0.004 | ||
| ProSiteProfiles | 214 | 243 | 30 | 9.239 | ||
| SMART | 237 | 277 | 41 | 0.0077 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0096800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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