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LotjaGi3g1v0099700.4

Overview

Field Value
Gene ID LotjaGi3g1v0099700
Transcript ID LotjaGi3g1v0099700.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 8-amino-7-oxononanoate synthase; TAIR: AT5G04620.2 biotin F; Swiss-Prot: sp|Q8GW43|BIOF_ARATH 8-amino-7-oxononanoate synthase; TrEMBL-Plants: tr|I1KFQ1|I1KFQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0099700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12388946..12393697) extracted from Lotus japonicus Gifu genome v1.2.

TTAATGATGGAGATACCACATGGGTGTTGGGAAATGTGGGTCGAAGAGGCACTTGGGACACTTAATTCTCTCAAAGTACT TCGGTCTCTGAGACCCATTTGCCTCCGGAAGGATGAGCCACCTTCACATTGTCTGGAATCTGCGGTTGGTGAAGGTGCAC TCCAGGTGTTCGATGAAATGCAGCAGTGGGATAGGTCATCTGTGGAAGTGGAGATGAGTGAGGCCACGTTTAGTAGATGG ATGAATGACACCCCAAGTTCTGGTACTGCTTTCAAATTACGTGTGTTTTATTATGGATTAATTAAAGGGTAAATAAAGGG TGTTTGTGAACCTTATTGGACATTACTATGCTTGTTACGAGAATTAAAAGATACTTGTAGGTATTATTGATTCCAAACAA AGCTAAATACATAAGTTTTCCTTGCCTCACTTCATTCTTGTGACTTGCACAAATTGGGATTGCTTTGTTTTCTCAAGTTT GTTGGAATATATATTGTGTTCTGTTCTGGTTACAGATGCTAATGTTACACCTTTTTTTTGGTATAGGTGATGACATTATT CATAGTGCAGTTGCTGGTGATGATGAACCAAGGGCATTTTGTGACAAGTTTAAAAAATTAATTTTGTTTTCCGGAAATGA TTATCTAGGATTGAGTTCCCATCCGACTATTGGAAGGGCTGCTGCAAAGGTGTGTTTGTGAATTTGAAATAGTTTTTGGT TCTCTTCTGAGTTTTTATCTTTAGAGTCTTGTTTCTTCAGTTTTCTTAATTAAAGATAATTGCCATTATTTTTATTGTTC CAAATCAGGCAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTG CTAGAGTCAAGCTTGGCAGATTTGAAAAACAAAGAGGTAAAGACAACTTTCAAGAACTCCTTAAACTGTTCTGGTTTTGT TATTAGCTCTGCTTTGTACCTTGACTAAAGAATACTTAATTGATGGTTATGATTAAACTTGGGAATCAAGAATCATATGC TGATATTTGCTACAATGGAATACTGTGAATTGACTCAGTGGACAAGTTTATGCATACTTGTAATTGGTCTTTTCTCCTAG TTTGAACATTACTTGATCTTAGTGATTTAGTCAAGGATATGGAGAAAAAGTGGTGTCCATAGTGATATGCTTTGTTGATG TGGAAGAGAGTTCTGCAAAAGCTTGAAATACATTTATGGCTGGTTGAGTACTTGAGTTAGGGAAACTGTAATTATTTTGT CAATGTCCCTCACTATTTATAATTATTGCTTCAATAAATGATCACATCTACTAATGGGTTGCTATTAATCGCACTAGAAT CACCTATTTTTTCTCTGTCCACCTTCCTTCAATTGTGAGGAACTTATGGGCTACATTCTTCTGAGACTCATCTATTGTAT AACGAATTGAATAACCGACCCATATGTGATAATAAGTCTTAATTGTATGAAATGCTGACCCATTTTTGGTTTAAAATCCA TGCTATAGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCTAATATGGCCTTCATGACAGCATTAGGAAGCATAGCTTCT CTCTTAGCTGGGAATAAATTACCTTCAGATGATGAAATGATTGCAGTATTTTCTGATGCATTAAACCATGCGTCAATAAT TGATGGTCTTCGTCTTGCTGAGCGGCAAAAAGGTGTTAAAGTGTACATATATAAACATTGTGACATGTCGCACCTCAATG TGCTCTTGTAAGTATCTTTTACTGAATTTTATATATTCCCCTTCTGGCAGTCTCTCCAAATATTAGCATTATTTTTATAT CTATGATTTCAACAGATCTCAATGCAGAATGAGGAGGAAAGTTGTGGTGACTGACAGGTTAGTCATTTGCTTCTAGCAAA AGAGAACTGGAAAAATGATCAAGATTTGAAATAACTGGTGTTACCTGAATCTCAGTCTTTCACATAGCCTAAACACTATT TGCATGTTGGGTGCTGCATAAATTTTCTCCTACTTTTGTCTCTAGAAAATCTCTGGGTTGACAAATTTTTAAAAGTATAT GAATTATGAAGAATTAGTCAATCCTACATTATGACTTGAATTAGTGAATCATATTTTTAAGTTCCTTAATGACAAATTCC AATGCTACACTATCTTGTTATTTTTGTTTGTACTGCTGACAGCTATGACATTAACTTAATTCTTTGGATATAATTTTTCA TGTGCATTATGGATCATCTGGTTTATTGCAGTTTGTTTAGCATGGATGGAGACTATGCACCAATGGTTGAGCTTGCAGAA CTTCGCAAGAAGCATGACTTTTTGTTAGTCATTGATGATGTAAGACCTCCCATATGTTTTAGCAAATGTCTTTTTCTTCA TAAAGACTCTTATATGTTGTTATTTACATGGTTCTGATCCTTGTATTAAGTTAATACTTAAGAAGATCTTAAGATAATAT TCATAGAACAGTGATAGCATACCATCAACGTTCCTAGAAACGAACCACCCATTCACTCTACCATATACTGTCTTCCTGAT TGAATGTTTATGTGATACAAGCAAAATATGGCTTCTCTCCACTACAAAGTCTAGTGCAACTATAAACTGTGAAAATAAAA CCTGCGTAATATGTGTATATCCAGGCTCATGGAACATTTGTTTGTGGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAA CTGTGAAAAGGATGTTGACGTATGCATTGGTACTCTAAGTAAAGCTGCTGGCTGCCATGGAGGATTTATAGCATGCAGGT AACCATTTGAGTGCACTTGCTCCTCAAATTAACTCTTTAACAGTAAGGAAGATTAGTTTCACGCTTTTCTAAGTTTCTGC ACAACAATGTGTTAGGACTCTTCTGAATTTTCCGGTTTCTATCACAATGGCACTACACTGTTTACATTTCATGAATAGTT CACCATTGACTTTTACTATTCTATGAATTATTATAGCAAAAGCTGGAAGCTATTAATACAGTCAAGAGGTCGTTCATTCA TATTTTCAACTGCTACACCAGTCCCAGTTGCTGCTGCTGCTCACGGTGAGCTCCAGTGTTGTTACTAGTTCCTATTTTTA AGTATTTATTGCTTGCCCTGGACCTTCATCTACATCAAGTTATATCACACAATTAAAACCATTCATGTGGTTCTTACCTA ACAGCTTAAGCTCTTGGGATAATTGGTTTTTTGACATGATGTAGGAGCCTCTATGACCAAGCGATCTAGAGTTTGATCCT TGCCGCCCCCAATTCTTCTAATAAAAAGTTGAATATCAGCATATGGTAGGTGAGCTTGTGCATTGTCCACGCTTCAAGCT CAAATAGACTCTTGCGTGAGGGGGCGTGTGAGAAATGATAATATAAAACCATTCATGTGGCCCTTACCCAAAAGCTTAAG CTTTTGGGGTAATTGGTTGTCTGACAGTAACATCATCTTCTTATAATCCAGTGTAGTGTTATTTACCTGACTATTGCATT AAAAATGTTGCTCAGCCATGTAATTTGAACAGGGAAAGTGTTAAATTGGAACCACCTGAATTCTAATGCCGAAATTGATC CAAATATGCATATTTGTAAATACAAGAGTCATTTAGATAAGAGTTGGTAATTTTTATCTGATGCAAATGAAGAATTGTTC TGTACACCCATGATTATATTGTTGGTCTTCTACCTTTCTTGGAATGTTTGTTCAGAGATTCAAAATATATATTATCATTT CTCTTTCTTTTGCTTTAGCTCCAAAAATCTTGTTGGAATCACTCATTTGTTAAAAATGCGATTTTCCAGCTGCTGTTGGA GTAGCAAAACTTGAGACATGGCGTAGAAAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGT TACAAGTCCCATTATATCTCTAATAGTAGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGTAAATTCCCACCACTCCCC TCCCTTTCTCTCTTATTTAATAATAGTTAAAATTAATTTCTGTGCCTTGATTTTTCAAGATCTCCCTCATTTAACTTCTC CACAGGGACTTATAAAATTACAAGTACTATTTCTTAAGTTCGGAACCAAATATTTATTTTATTTGAAAAAGCTCCCATAA ACTAGAATCTAATCAAACTGGGCATCAGAAGCTGATCTTGCATGCTTTGAAACACTAAGCATTTTTAGTCTGTCTTGAGC AGGTTTTTATTGCAATCTGGATTCCACGTGACTGCAATCAGACCACCAACTGTGCCACCTAACTCTTGCAGGTTAGTATC CGTTATTTACTTGAATTTATACATGACGGCTCAGGATCCTCTCACACATAAACTTCACATTACATTGTCATATTAAAATT TGATGTCTATCTCTCTGTTCATATGTATTAAATAGGTGATACCTTTGAAATATTTATGAGGAGACAGATAGATACAATGT TTCACTTGACATTGTCATGTGACTTGGAAAGATTCTAATCCACAATATAAGAGTTAAATAGAACAAATTCTCAGTGTTCA ATTAGCTATATTTGATTATATTGTTTCCATGTGTACATCTCTTATTTCTCATAATGTCTATTTAGGCTGCGAGTGACCCT AAGCGCAGTTCATACAAGGCAAGATTTGGAAAATCTCTCAGCTGCACTCTCCCGTTGCATAAATTTTCAGGACACCCGCA TATATAGCAGCAATGGCTATGCAAGATTGTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0099700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGAGATACCACATGGGTGTTGGGAAATGTGGGTCGAAGAGGCACTTGGGACACTTAATTCTCTCAAAGTACTTCG GTCTCTGAGACCCATTTGCCTCCGGAAGGATGAGCCACCTTCACATTGTCTGGAATCTGCGGTTGGTGAAGGTGCACTCC AGGTGTTCGATGAAATGCAGCAGTGGGATAGGTCATCTGTGGAAGTGGAGATGAGTGAGGCCACGTTTAGTAGATGGATG AATGACACCCCAAGTTCTGGTGATGACATTATTCATAGTGCAGTTGCTGGTGATGATGAACCAAGGGCATTTTGTGACAA GTTTAAAAAATTAATTTTGTTTTCCGGAAATGATTATCTAGGATTGAGTTCCCATCCGACTATTGGAAGGGCTGCTGCAA AGGCAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCCCTTATTTGTGGATATACCAATTATCATAGGCTGCTAGAG TCAAGCTTGGCAGATTTGAAAAACAAAGAGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCTAATATGGCCTTCATGAC AGCATTAGGAAGCATAGCTTCTCTCTTAGCTGGGAATAAATTACCTTCAGATGATGAAATGATTGCAGTATTTTCTGATG CATTAAACCATGCGTCAATAATTGATGGTCTTCGTCTTGCTGAGCGGCAAAAAGGTGTTAAAGTGTACATATATAAACAT TGTGACATGTCGCACCTCAATGTGCTCTTATCTCAATGCAGAATGAGGAGGAAAGTTGTGGTGACTGACAGTTTGTTTAG CATGGATGGAGACTATGCACCAATGGTTGAGCTTGCAGAACTTCGCAAGAAGCATGACTTTTTGTTAGTCATTGATGATG CTCATGGAACATTTGTTTGTGGACAAAACGGTGGTGGTGTTGCTGAGGAGTTCAACTGTGAAAAGGATGTTGACGTATGC ATTGGTACTCTAAGTAAAGCTGCTGGCTGCCATGGAGGATTTATAGCATGCAGCAAAAGCTGGAAGCTATTAATACAGTC AAGAGGTCGTTCATTCATATTTTCAACTGCTACACCAGTCCCAGTTGCTGCTGCTGCTCACGCTGCTGTTGGAGTAGCAA AACTTGAGACATGGCGTAGAAAGGCTATATGGAACCGTGTGAAAGACTTTCATTCACTTACAGGAATCCCTGTTACAAGT CCCATTATATCTCTAATAGTAGGCAGTGAAGACAAAGCACTGCAAGCAAGCCGGTTTTTATTGCAATCTGGATTCCACGT GACTGCAATCAGACCACCAACTGTGCCACCTAACTCTTGCAGGCTGCGAGTGACCCTAAGCGCAGTTCATACAAGGCAAG ATTTGGAAAATCTCTCAGCTGCACTCTCCCGTTGCATAAATTTTCAGGACACCCGCATATATAGCAGCAATGGCTATGCA AGATTGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0099700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMEIPHGCWEMWVEEALGTLNSLKVLRSLRPICLRKDEPPSHCLESAVGEGALQVFDEMQQWDRSSVEVEMSEATFSRWM NDTPSSGDDIIHSAVAGDDEPRAFCDKFKKLILFSGNDYLGLSSHPTIGRAAAKAAQEHGMGPRGSALICGYTNYHRLLE SSLADLKNKEDCLLCPTGFAANMAFMTALGSIASLLAGNKLPSDDEMIAVFSDALNHASIIDGLRLAERQKGVKVYIYKH CDMSHLNVLLSQCRMRRKVVVTDSLFSMDGDYAPMVELAELRKKHDFLLVIDDAHGTFVCGQNGGGVAEEFNCEKDVDVC IGTLSKAAGCHGGFIACSKSWKLLIQSRGRSFIFSTATPVPVAAAAHAAVGVAKLETWRRKAIWNRVKDFHSLTGIPVTS PIISLIVGSEDKALQASRFLLQSGFHVTAIRPPTVPPNSCRLRVTLSAVHTRQDLENLSAALSRCINFQDTRIYSSNGYA RL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13693
9 465 457 2.1E-181 –
PANTHER
PTHR13693:SF89
9 465 457 2.1E-181 –
SUPERFAMILY
SSF53383
108 466 359 1.18E-84
IPR015424
Pfam
PF00155
110 461 352 2.4E-46
IPR004839
Gene3D
G3DSA:3.90.1150.10
114 453 340 3.8E-112
IPR015422
Gene3D
G3DSA:3.40.640.10
125 376 252 3.8E-112
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0099700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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