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LotjaGi3g1v0139400.2

Overview

Field Value
Gene ID LotjaGi3g1v0139400
Transcript ID LotjaGi3g1v0139400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:18402391..18407375) extracted from Lotus japonicus Gifu genome v1.2.

TTGAATTTGATGGAGCGCAGAGAGAATCAAACTCCCCAAGGTATGAACTTTGAAGTTATTAACCAATAAAGTTTTGATTT TTAATTATTATTGTTATGTGGGTACATTTGTTTGTGGTTACTATGATTCTGTCTGTGTGGAAATTTTGCAGGCCAGACAG CTCAAGTTTTGGTTGAGTTTTTGGAAGTGGCTATCACTGCTGTTGTTTTTCTCAAAGGGGTTTATCCTTCTGGTTGATTC TTGAATACCCTTTAAGTTTTGGTTCTTCCTCTTCATTTTTTTGTTTATGTTTTGCTGTTTGGTTGCTGGGAAAAAAGAAG AAAAAAAAACTGATTTTGATTGCTCAATTCATTTTTTTGTTCTCTTTCAAACTTGCTTTGCTCAATTCATTTTTTTGTTC TCTTTCAAACTTGCTTTGCTGGGAATTTATTTTGATTTATTTGGTTGTGTTGGGTGTGGAAAAGGTGCCTTTGAGAGGAG AAGGTATATGAACTTGGTGGTTCAAAGGGCTTGCCATCCTCAGCTTAGATATTACATTCATGCTACTGTTTCAGGACTTC TTCCCTTTCTACAAAAGGTTGGTCATATTTGGTAATTTGATTTTTGTTTGCTTTTTTTTGTACTCAATTAGTCCAACTAT ATGTTGCTTCAAATGTCATATAGAATTCAGAAAAATCTTGTTCCTGCTAATTGGTAATGGAAATGTAAGATTGTTTATTT GTAGTACTGAAAAATCCATGAATAGAGTTAGAGGATTAGGACTTACTATAGCTTCAGGCTAATCTGGAGGTTCAGACTTT GAGCTTCTCTCAAGCGGTCACGCGTACTTGCCTAGCTACAAAGTTTCAACTTGGAAAAAATTACTTTCTTGCTATGGCGC CCATTTTGCCATTATATCCGTAAATTAACTTAACTACAGTCAATATCTTATCTGGGCATAGTGAAGATCACATTTGTTGG GTGGGAATTCAAATGCAAGCACATTAAAGATCTTTGGCACACTAAACTTATTATCAGTTTTGAGCTGTCCTGCTGTATGT CCTAATGCTTATACAGGCTGTTCGACCGATTTTATATGAAGAAAAATTGTGCAATGATTAATATTATTAAAAATTAATTT ACCATTATGTGGTGTTTGTGTCATATAAGCTTGTGACATTGCACAGAAGGGCACTGAATGAGGTAGTTCCTTGTTAGACA CTTCAAAAAAAAAAAGTACAAACTCACTTGGCGCTTTGGAATCTTGTTGTGTTAAAATAATAAATTGAAAGTAGCAAATT TTTGTAGTGCCTTCTATGCCATGTCACCTCCAACATGGAATAAACAACATCATAATTGTAAATAGAATTTTAACTATATC TAATCAGTGAATACATTTTTAATATTAAATTGATCAAAAGGTCTGCATATATCAATGTGCATGTGTGTGAGAGAGAGTGT TTTGATCATTTGTTCTTGAGACTGTACAATAGATTGTGGCCAGTCAATCTGTTGTTTTAAAGGTAAAATCTTTAGCTAGA GATTAATTGAACCAAATCTTTTAATTGGTTTTGACTGCTATGATAAGTTCCATTGGTATTGCTATTATTGAATGCAAATG ACGTCTTTTGGTTCAATCAAGTCATTTCCTTTCATTTTGCATTCAAGTTCAACAACAGGACATTTAGTTTAATTAAGGCA TTTCCTTTACTTTTGCCATTGACATTATAACATCGTAACTAAATTGTATTTTATGGTTTTTTAGTTTGCAACATACACTT TTTGAAGGTCATGTGCTTTTATAGTATTACAGTTGATGGATAATGTACTTATTTTTATATGAGAAATACTTGAAGGTTGT TATATATTAGACTTCTCATGTTTCTTTTGTCACCAGTAATAGCTAGCTTATATATGTCATCTTCTATAAGACTGTACCAA AGATATCCAGTTTTTGTTTTTATATAAAACTTCTGCAGACTGATAGATATTATGATATTCTAGGATACAACATAAACTTT TGAAAGCTTTGGATTCCTTGCTTTCAGTTGAAGCACAGTATGCTTATATTTATATGCGAAACAATTGAAGGTTGTTATAT ACTCATAGTAGTCAATCCCGGATAGCGGCCGGCCCCAAAAGTGGGATAGCGGGATAGCGCATAGCGGGATGGCCGCTATT CAGATTTTTTATAAATAGTTTTATATAATTAATAGTTTAATACTATATACATATAGATGCCAAACAATGTCAAATATTGC CTAAAATTCATAACATTCATAATACAAATAGAAATCATAAGTCTTGAACAATAACACGCAACTAAAAACCACTCAAAAGC AAGGTAAAGAAGTTGGATTTGCAAATGTGAATGAAGAATGAAGCTCCATTATTTCAAGTTTGACCTTAAATGGCCTTGAG AAGTCCTAAAATGCCCCTAAAAAGGTTCCCCAACAATTTAAAACCGAGGGGCTTGAGACATTTTTCCCTTCGTCCATATA GCGCCGCGATTTCCCGCTATTTACCGCGATCTGCCTCTATTCGCGCCGCTACGGCCGCTATTGTGAAGTGCGCCGCTATT TGATTTCAGTAGCGGCACCGCTCCGCTCTGCTACGCCGCTATAGCGCGCTATTGACTACTATGTATATACTATCTCCAGT TTCAATTAACGACTTCACGTCCATTAAAAATATAGATATTTTGGTTACTAGCATTGAATTTGACCTTCATTTATATTGAT TTTTCAAAATTACACTTACCCATTTTTTCAATTATCCTCGGTAAACAGAGAGTAGAGAGAGGGAGATAGAGAAAGAGAAT GCAATTAATATTCTGTATTTACTATTGTTCTGAACAAAAAATGTTGAATAACTAATTGTGGGTATTTTTGTTAAAAAATT AATTAATTGAAGACAGACTGACTTTAAGTTTGTTCTTACAAAAATGACTAAGCTTACCTTCAATTTAGTTCTTATCAAAA CGACTGGAAGTAGTCTTAGATTTCTTAGGTTTTTTTGTCATCAGCATTGAGAACTAGGTTTCATATGCCATCTTCTATAA GACGACTGCATCAAAGATGCAGTTTTTCTTTTTCTTTAAAATTTCTGCAGAGTAAGAGGTTCTGTGTAATCATTTATGTT TATGTTATTACCACTTGGTCAAATGCGAATTGTGTTGATTAGCTGGTGATTTGGCTGTTAGGTATCTTCTAATTACTTTC TAATTTGCTTTCTTCCATTGTCTAGTTATAGTCAACGTACAAAATAAGAGATCAAGTATGCACCTAACTCACACTATTTC TCTCCAACACATTGTACAAAAATTAAGTCAATAGCGACTAACATGTCATTATGCTCATTTTTTTTCTGAATATTTAAATT AGTCAGTAGCTAGTCAAAGAGCCACTATCCTATATAAGACACTCATCCCAGTCACATCAAACTCTCTTTGCAACTCCTTT ATATTGGCATGCTGATTTTTCCCCCTTACATTACATTTAATAGGGAATAGTGGAAAGGGTGGCTGTTATTTTCTTTAATT CTGGCAATGTTCCACTTGAGAAATTTGTTTTCAAGCTTGCGATGAACCAGTCATATGGTTCAGCAGTGGAAGAGGTTGAT CTCGAGTCCTCTCTCAGATCATTCCTGATCAAGCTGTCAATCTCAGAATCTCTTACGAAGGAGCTTCCTCCTGGTAAATG CAAATATAATCATGCTGCAGAGAAATCTGTTTCTCATTTCCATGTTTTCTTTTTAACTTGATTGCACTTTTGGTCCTTTG ACTAGAACCAATGTGTCCTCCAATATTTTTTCCTAGCAATGAAATCCCCAACCCCAATATTAGATTCTTCTATTGGTCTA CGTACCATCTAATTACTACTCCCTCCGTTCCTGATCTTTTGTTGTTTAAGGTTATGCACATTGTTTAAGAGTGCAATCAT TGATATATTTGTTGACATAAACACCCCTATTTAATGTTGAGTTAGAGTGAAGATAAAGAATGATAGTTATTGGTTAAGAA ACTTGTTATGATTTTGATTGGTGAAAATAAGAAGTGGTAGGTGAGAGATATAATATTAAATGAGGGTATACATGGAAAAA TTTGAGAAAAAATGCATTGGGTTTGTAAAACAACAAAAGTTTTCGAATTTAGGTCAAAAGTTAAAACAACAAAAGATCAG GAACGGAGGGAGTAATAGATGTTAGTGACGTGGCTGACAATTTATGCACATGACATGGCATATAACTAAGTAAATCATTC TAATGGACCTACAGATGACTTTATTCTATTTAAGTACCTCATTTTATTTTTGAGCTATTTATATTGCGGGAGTTAAATAA ATTAAAGTCACCTGTTAGTTCATTACTTCAAAATGTATCATGTCTGTATGTAAATAATTCAACAAATTGCTAACTTTGGT CAGTAGTTGAAGAGAAGACTGATTAAGGACCTAATTTTTTCCAATCAGAAAAATAGGAGACAGAAACCACGCTTCAACCA TTGGAGAGACTGCAAGGAAGCCTTTTCTTTTGACTTCATCCCATGCATTTAATTTTTGTCATTGTAAATTTGTTATAATC CATTTCTCTTTGCTTGTTTGAACATGTGTGCAGACACATACACACACACACACACATCTGCACACTGGCATGCCCATATC ATCAATTTCATTTTATTTAAATTGCTACTTTTGAATCAACTGGAAGTGGATTTGTACTTCTTTCTTTTACACATCTGTAC TGTTGTTCTTTGGTATGTATAGACAGAAACCATGGTATAAACTTTTTGCTTACCTCTCTAAACAGATTGCAGGTGGGAGA TCACTGCTTACTTTCGATCCCTTCCTGAGACTGGTACAAACAAGGAAGCAGACTTATGGATCCCAACTGACACGAAGCAG TGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTTGTGAACCTCTGTGTTTGCAGTTGTACTTGGAACATCC ATGCTTACCCGAATCAACTATTTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0139400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCGCAGAGAGAATCAAACTCCCCAAGGCCAGACAGCTCAAGTTTTGGTTGAGTTTTTGGAAGTGGCTATCACTGC TGTTGTTTTTCTCAAAGGGGTTTATCCTTCTGGTGCCTTTGAGAGGAGAAGGTATATGAACTTGGTGGTTCAAAGGGCTT GCCATCCTCAGCTTAGATATTACATTCATGCTACTGTTTCAGGACTTCTTCCCTTTCTACAAAAGGGAATAGTGGAAAGG GTGGCTGTTATTTTCTTTAATTCTGGCAATGTTCCACTTGAGAAATTTGTTTTCAAGCTTGCGATGAACCAGTCATATGG TTCAGCAGTGGAAGAGGTTGATCTCGAGTCCTCTCTCAGATCATTCCTGATCAAGCTGTCAATCTCAGAATCTCTTACGA AGGAGCTTCCTCCTGATTGCAGGTGGGAGATCACTGCTTACTTTCGATCCCTTCCTGAGACTGGTACAAACAAGGAAGCA GACTTATGGATCCCAACTGACACGAAGCAGTGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTTGTGAACC TCTGTGTTTGCAGTTGTACTTGGAACATCCATGCTTACCCGAATCAACTATTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0139400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MERRENQTPQGQTAQVLVEFLEVAITAVVFLKGVYPSGAFERRRYMNLVVQRACHPQLRYYIHATVSGLLPFLQKGIVER VAVIFFNSGNVPLEKFVFKLAMNQSYGSAVEEVDLESSLRSFLIKLSISESLTKELPPDCRWEITAYFRSLPETGTNKEA DLWIPTDTKQWQQPPLITPIKSMSCEPLCLQLYLEHPCLPESTI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11842
1 196 196 2.2E-67 –
PANTHER
PTHR11842:SF10
1 196 196 2.2E-67 –
Gene3D
G3DSA:3.30.900.10
2 198 197 3.0E-47
IPR036570
SUPERFAMILY
SSF56019
8 194 187 2.75E-40
IPR036570
ProSiteProfiles
PS50815
11 194 184 33.457
IPR003511
Pfam
PF02301
16 131 116 4.4E-7
IPR003511

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0139400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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