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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003511
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.533s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0112259.1
n.a. HORMA domain-containing protein [Medicago truncatula] gi|357463013|ref|XP_003601788.1| chr0 48822521 48825860 +
5 domain predictions
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Lj0g3v0112259.2
n.a. HORMA domain-containing protein [Medicago truncatula] gi|357463013|ref|XP_003601788.1| chr0 48822521 48827170 +
5 domain predictions
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Lj1g3v0514240.1
n.a. HORMA domain-containing protein [Medicago truncatula] gi|357463013|ref|XP_003601788.1| chr1 6554496 6559680 -
5 domain predictions
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Lj3g3v0965710.1
n.a. Mitotic spindle assembly checkpoint protein MAD2B [Medicago truncatula] gi|357451825|ref|XP_003596189.1| chr3 12768450 12781076 +
5 domain predictions
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Lj3g3v2315530.1
n.a. Mitotic spindle assembly checkpoint protein MAD2B [Medicago truncatula] gi|357451825|ref|XP_003596189.1| chr3 28422062 28427666 -
4 domain predictions
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LotjaGi1g1v0201500.1
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|A0A0B2SCG2|A0A0B2SCG2_GLYSO HORMA domain-containing protein 1; Found in the gene: LotjaGi1g1v0201500 LjG1.1_chr1 42644162 42649148 -
3 domain predictions
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LotjaGi1g1v0220600_LC.1
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|G7JBZ6|G7JBZ6_MEDTR Meiotic asynaptic mutant protein; Found in the gene: LotjaGi1g1v0220600_LC LjG1.1_chr1 49042532 49050185 +
3 domain predictions
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LotjaGi1g1v0220600_LC.3
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|G7JBZ6|G7JBZ6_MEDTR Meiotic asynaptic mutant protein; Found in the gene: LotjaGi1g1v0220600_LC LjG1.1_chr1 49042707 49048241 +
3 domain predictions
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LotjaGi3g1v0139400.1
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18399921 18413807 +
3 domain predictions
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LotjaGi3g1v0139400.2
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18402391 18407375 +
3 domain predictions
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LotjaGi3g1v0139400.3
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18402878 18407375 +
2 domain predictions
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LotjaGi3g1v0369800.1
n.a. Mitotic spindle assembly checkpoint protein MAD2B; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|A0A151S2V7|A0A151S2V7_CAJCA Mitotic spindle assembly checkpoint protein MAD2B; Found in the gene: LotjaGi3g1v0369800 LjG1.1_chr3 75643267 75652808 -
3 domain predictions
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LotjaGi3g1v0369800.2
n.a. Mitotic spindle assembly checkpoint protein MAD2B; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|A0A151S2V7|A0A151S2V7_CAJCA Mitotic spindle assembly checkpoint protein MAD2B; Found in the gene: LotjaGi3g1v0369800 LjG1.1_chr3 75645595 75650880 -
3 domain predictions
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LotjaGi6g1v0099800.1
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672585 21675137 +
3 domain predictions
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LotjaGi6g1v0099800.2
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672652 21674797 +
3 domain predictions
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LotjaGi6g1v0099800.3
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672673 21674972 +
3 domain predictions
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LotjaGi6g1v0099800.4
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672782 21674244 +
3 domain predictions
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