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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036570
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.228s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0128300.1
n.a. Autophagy-related protein 13; TAIR: AT3G49590.1 Autophagy-related protein 13; Swiss-Prot: sp|Q9SCK0|AT13A_ARATH Autophagy-related protein 13a; TrEMBL-Plants: tr|A0A0B2RZV3|A0A0B2RZV3_GLYSO Autophagy-related protein 13; Found in the gene: LotjaGi1g1v0128300 LjG1.1_chr1 20480249 20485750 +
2 domain predictions
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LotjaGi1g1v0128300.2
n.a. Autophagy-related protein 13; TAIR: AT3G49590.1 Autophagy-related protein 13; Swiss-Prot: sp|Q9SCK0|AT13A_ARATH Autophagy-related protein 13a; TrEMBL-Plants: tr|A0A0B2RZV3|A0A0B2RZV3_GLYSO Autophagy-related protein 13; Found in the gene: LotjaGi1g1v0128300 LjG1.1_chr1 20481190 20484972 +
2 domain predictions
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LotjaGi1g1v0201500.1
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|A0A0B2SCG2|A0A0B2SCG2_GLYSO HORMA domain-containing protein 1; Found in the gene: LotjaGi1g1v0201500 LjG1.1_chr1 42644162 42649148 -
3 domain predictions
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LotjaGi1g1v0220600_LC.1
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|G7JBZ6|G7JBZ6_MEDTR Meiotic asynaptic mutant protein; Found in the gene: LotjaGi1g1v0220600_LC LjG1.1_chr1 49042532 49050185 +
3 domain predictions
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LotjaGi1g1v0220600_LC.3
n.a. HORMA domain-containing protein 1; TAIR: AT1G67370.1 DNA-binding HORMA family protein; Swiss-Prot: sp|F4HRV8|ASY1_ARATH Meiosis-specific protein ASY1; TrEMBL-Plants: tr|G7JBZ6|G7JBZ6_MEDTR Meiotic asynaptic mutant protein; Found in the gene: LotjaGi1g1v0220600_LC LjG1.1_chr1 49042707 49048241 +
3 domain predictions
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LotjaGi1g1v0316300.1
n.a. Autophagy-related protein 13; TAIR: AT3G18770.1 Autophagy-related protein 13; Swiss-Prot: sp|F4J8V5|AT13B_ARATH Autophagy-related protein 13b; TrEMBL-Plants: tr|A0A1J7IGP6|A0A1J7IGP6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0316300 LjG1.1_chr1 76264451 76270153 -
2 domain predictions
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LotjaGi3g1v0139400.1
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18399921 18413807 +
3 domain predictions
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LotjaGi3g1v0139400.2
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18402391 18407375 +
3 domain predictions
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LotjaGi3g1v0139400.3
n.a. Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400 LjG1.1_chr3 18402878 18407375 +
3 domain predictions
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LotjaGi3g1v0369800.1
n.a. Mitotic spindle assembly checkpoint protein MAD2B; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|A0A151S2V7|A0A151S2V7_CAJCA Mitotic spindle assembly checkpoint protein MAD2B; Found in the gene: LotjaGi3g1v0369800 LjG1.1_chr3 75643267 75652808 -
3 domain predictions
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LotjaGi3g1v0369800.2
n.a. Mitotic spindle assembly checkpoint protein MAD2B; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|A0A151S2V7|A0A151S2V7_CAJCA Mitotic spindle assembly checkpoint protein MAD2B; Found in the gene: LotjaGi3g1v0369800 LjG1.1_chr3 75645595 75650880 -
3 domain predictions
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LotjaGi6g1v0099800.1
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672585 21675137 +
3 domain predictions
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LotjaGi6g1v0099800.2
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672652 21674797 +
3 domain predictions
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LotjaGi6g1v0099800.3
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672673 21674972 +
3 domain predictions
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LotjaGi6g1v0099800.4
n.a. Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 LjG1.1_chr6 21672782 21674244 +
3 domain predictions
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