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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164800 |
| Transcript ID | LotjaGi3g1v0164800.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|M5W718|M5W718_PRUPE Uncharacterized protein; Found in the gene: LotjaGi3g1v0164800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22441085..22445652) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAACTCACTAGTGAAATAATCTTCAACATTCTTTGACTACTGGTTTAACAATTAGCAGCTATGATTTAACCCATGTT TCTTCACCTTTCTTCCAGATTGATATTTTTGATTGAAGAGAAGTTGGTGTTAATTTTTTGGAAAACCATGATGGGTTTTG CTAATCCAAGATCTGAAAGGTGTGTTTCCTTCACAATATTTTTGATGTGGTTACAGCCTTATTGGAGCTTATTTAATACA AAGAGCACTAGATAAGCTCCAATAAATGCTTTTGGCTTTCATCCAAACGGGTTCTACTTCTACTACTGCTTAAGAGTCTT CAACGTAACAATCAAATGCATTCTTTGAATAACTCAATAAATAAATTTCTTTTTATAGTTTATAAGCTTTTAACAAGGAA ATTAATGTTCTAGGCATGAAGATGATCCTGAAGTAGAAAAGTTCCCTTCAACTAGCGGTGAAAGTGGGATTAAGATTAAA TACAACATTGATGGAACAAAAATACCTGAGCATAGTTCCAAAAGGGCTCAAAAGAGGGTAGCAGGGAAGACAGGGAAGTT CTTGAAAGCAAGAGTACTGTCAAGAGTGTTCTCAGAGGACTGCGAGAGAGTGAAGAGAAGGGTGTTAGATCCTCGCGGAC AAACAATCCACCGTTGGAACAAGATTTTCTTAATAGCATCATTAGTGTCTTTGTTTGTAGACCCGTTGTTCTTTTATTTG CCAGTGGTTCAAGATGAAGTGTGCATAGACATTGGAACAACTCTTGAAGTTATCCTTACAGTTGTTAGATCAGTTGGGGA TGTGTTTTACATGATTCAGATTATGATGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCACAAGTATTTGGGAGAGGAG AACTTGTTCTAGGCTATTCTAAGATTGCTGTTAGGTACCTCAGAAAGGGATTCTGGTTAGACTGTGTAGCTGCATTGCCC CTTCCTCAGGTACCTCACTCTAAAATCTTCTTTAGTTTAATCAATATGATGATACTTTTACGAATCAAGATCTTCTGTCC TCGTTTGGTGTCCCCTTATATGTCCCACTAATAAAATTGTGTTATGTCAATTAAAAAATGGTATGAATATGACGGTTATT ACCTTATTACATGTGTGTTGGTGGGTCAGAGAAAGGGTCATCAAATTGGGATAGAAGATTTCAACCCTTAAGGGGCTGAA TAATGAATAGCTCTTCTGTTATGTTTGTTTGTTCCAGGTATTGATTTGGATTATTATCCCAGTTCTTAGGGGTTCAACCA TGGCAAACACGAAAAACGTGCTTCGCTTTTTCATCATTTTCCAATATGTTCCAAGACTTTATTTGATTTTCCCACTTTCA TCACAAATTGTGAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGTGCTGCTTACAACCTGATGCTTTACATGCT GGCTAGCCATGTAAGTAGAAATACTGCATTTTCTTATTGCTCAAGCAGCTGAAGCATTTTCCTTTTCATCATGTTTATCA AGGGAATTTAGTCTTGAAGATAAAACTTAAAAGTGTTTGGTGGAGACCAAATTTTATTTCCTCACAAGCTAAACTAGAAT GTGGTTGAAGTTTTTGCCTAATGTTAACATTATATGACTTAAAAGAGTTAAAAGTACTCCTTCAGTCACATCTTGAGATT TCATCCACCAAGTAAACACTCCATCTACTCTTAGGATGAAAACATGTATTAGTCTTGCAAAAATAAATGTGTATTTGGAT TTCTGTTGAACTCAATGCTGATCTACGCTAAAGTCAGAGTGACAAAATCTTGTTTCACCATTTGTGTGTTGGGATATGTG CTTCTCAAGTGGGAAACCAAACACACTAAGTGCATGTTTCGAAACTCTTGTACAATTGATTATGAAGTCATAATCAATTC CGGGGAGAAACTTTTGTGAGTAGCTTCTAGATTTCAGAATTGAATATGATGAAAGAAAAGCTGATCCAATTTCTGAAGCG ACTGTTATGGATGTTTTAATTCTGTTGGCAAACTATGATTTATATTATATACAATATTGATAATGCAGACAAATTTTACA AAAGAATAGTACAGAACAATTGAAACACCAAATTTTATTTCTTTTGTTTTGTTTTTTCTAATGGGAATTGGGGAATGTTG TGAATAGGTTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGACAAGAAGCATGTTGGAAAAGTGCGTGCAATCTGG AGAATTCATCTTGTCATTATGGATTCTTTGATTGCCATAGGGTTAATGATGCTATCAGGGTGTCCTGGTTTACAGCTAGT AATATCACAGATTTATGTTCACCAAAAGCTGATTTTTATCCCTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTAC ATCCTCTGCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGTCTAAGAAATCTGAGGTAAGTTTCATGAAACGGTT CTACCTTGTTTTAGCACCTTGATTTGTTCAAAAGATTTTAATTTTAATCCTAATGTTCCAAAATTCTACTCATTTGTCTA GTTCATTTGTGTCATCATGCGGAGCAAAATATAATGCTTTTTTTCTGATTTGAGGGTGCAGTTCTTTGGGCCAAGGACTT TTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTGAT TGGTAATATGCAGGTAAAAGCAGTTAAATTATGAGTCTAATTTTCCATCATTCCATAAGGCATACAAATAGAACTTGAAA TTTGCAGACATACCTACAATCATTAACAGTTCGCCTAGAAGAGTGGAGAGTAAAAAGAACTGATACAGAACAATGGATGC ATCACAGGCAACTACCTCAAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGGTAGCTACACGAGGAGTA GATGAAGAAACTATTCTTAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTCTGTCTCGAATTAGTTAG AGGAGTAAGTCATGGGATTAAACTGTGTTCAAGCTAAGCTGATACCATGCCATGAACAACTAACCCAAAAGCTTAAGTTG TTGGGTGAAAATAGATGAATGATTTTATATTATATTTCTAACGAGCACTGCAACTGAAGTTTTCCATTAACTCATTGTTA ACAGGTTCCACTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTG AGGGAACCTATCTTGTTCGTGAGGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACT ACCAATGGAGGCCGTGCTGGATTCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATG GGCTTTGGACCCGAGACCGAGTGTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTG CACTTATAGCTGAAGACCTGAAGTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGG TTTTACTCACACCAATGGAGAACTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGT TGCTGAGCTAAGGGCTAAGGAGAATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTGTTGGGTATC CAACAAGGATGGGTAGAAGCACTAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACTTCTTTTCAG AAGCCAGCAGAGCCAGATTTTTCTGTTGTTGAATAACAATTGTACATTTCCCTTTAGTCTCAGATTGAAACCTTTGAGTT GTGTCTCATTCTCTATACCACCAATAAAATGTTGACATGTTCATTAAAAACCACCATGAAAGTTTGTAACAGCCCGACTC GTGTCTTTTTGAATTGGCACGGTAAGATTTCATTGATGGATCAGAAAATTTAGACCATTTTGGGGTCAAAAAATCTTGAT CCCTTACTCTCTTGGACAAGTGTTTTCTTTTAGTATCATTTGTTCATCAAAATTTGAGATAGGAATTTCTGTAACACAAT GAATAACTAGATGAGCTAAGATCTTAAATTTAAAATCTGTTGTCAAGGAAGTCCTTCATGTGGCTAATTTCCTTCATATC ATTCCTTGATATATAGCTAGGAATTCATATGTGGGCTTTTGAGAAACACCATATAATATATATGATGTAACTGAAAAAAT AAAACAGAAACAACATCATTGCAAGCAATAAAACAGAGATACACCATGATGCACCAAGAAAAAGAAGAATGATAACAGGG CCTCTAGGTGGCATTATGGCAAACCATTTTGGCATCAAACATTCAACGGAAGTCTGACTCACCTATATTCCATCATCAGT CTCCACTTTGAAGTTTCAACACCATGCGAAGGCAACATTTACAACGCCTTATTGGATAGCCCAACATTGCACTCACTCAA TTTGGTGC
CDS sequence (LotjaGi3g1v0164800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAGGGAACCTATCTTGTTCGTGA GGATGATCCTGTGAATGAAATGCTCTTCATAATTCGAGGAAACCTAGACTCCTACACTACCAATGGAGGCCGTGCTGGAT TCTTCAACTCATGTCGAATCGGCTCAGGTGATTTTTGCGGTGAAGAGCTATTAACATGGGCTTTGGACCCGAGACCGAGT GTGATACTCCCTTCTTCAACTCGAACAGTTAAAGCCATCTCAGAAGTAGAGGCCTTTGCACTTATAGCTGAAGACCTGAA GTTTGTTGCATCACAATTCAGAAGGCTACACAGCAAACAACTAAGGCATAAATTCAGGTTTTACTCACACCAATGGAGAA CTTGGGCTGCTTGTTTCATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGGAGTTGCTGAGCTAAGGGCTAAGGAG AATGTGTTAGTTTCTGAGCCTGTAACACCAAAATCTGGTTCAGGTTTTGTTGGGTATCCAACAAGGATGGGTAGAAGCAC TAGGAAAAGTGTCAATGTGCATTCTGGGACAAATTCTGGAGTAGTCACTTCTTTTCAGAAGCCAGCAGAGCCAGATTTTT CTGTTGTTGAATAA
Protein sequence (LotjaGi3g1v0164800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDERMLDAICERLKPALCTEGTYLVREDDPVNEMLFIIRGNLDSYTTNGGRAGFFNSCRIGSGDFCGEELLTWALDPRPS VILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKGVAELRAKE NVLVSEPVTPKSGSGFVGYPTRMGRSTRKSVNVHSGTNSGVVTSFQKPAEPDFSVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 5.5E-106 | – | |
| PANTHER | 1 | 215 | 215 | 5.5E-106 | – | |
| ProSiteProfiles | 1 | 94 | 94 | 10.913 | ||
| SMART | 1 | 128 | 128 | 9.5E-7 | ||
| CDD | 1 | 128 | 128 | 4.16207E-16 | ||
| Gene3D | 1 | 115 | 115 | 7.8E-36 | ||
| SUPERFAMILY | 1 | 115 | 115 | 6.81E-21 | ||
| ProSiteProfiles | 133 | 161 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0164800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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