Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000595
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 119 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.647s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0043729.1
n.a. Cyclic nucleotide-gated channel 18 [Theobroma cacao] gi|508710451|gb|EOY02348.1| chr0 14361489 14366248 -
4 domain predictions
 –
Lj0g3v0043729.2
n.a. cyclic nucleotide-gated ion channel 18 [Arabidopsis lyrata subsp]. lyrata] gi|297811623|ref|XP_002873695.1| chr0 14361489 14363443 -
4 domain predictions
 –
Lj0g3v0183609.1
n.a. PREDICTED: potassium channel KAT1-like [Glycine max] gi|356523521|ref|XP_003530386.1| chr0 89197053 89206682 +
4 domain predictions
 –
Lj0g3v0183609.2
n.a. PREDICTED: potassium channel KAT1-like [Glycine max] gi|356523521|ref|XP_003530386.1| chr0 89203948 89206682 +
4 domain predictions
 –
Lj0g3v0185859.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 4-like isoform X1 [Cicer arietinum] gi|502155450|ref|XP_004510076.1| chr0 90538778 90551274 +
2 domain predictions
 –
Lj0g3v0305459.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] gi|356516029|ref|XP_003526699.1| chr0 159223007 159223903 -
4 domain predictions
 –
Lj0g3v0305469.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] gi|356516029|ref|XP_003526699.1| chr0 159223148 159229919 -
4 domain predictions
 –
Lj1g3v0948670.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cicer arietinum] gi|502124140|ref|XP_004498403.1| chr1 11965759 11966181 +
3 domain predictions
 –
Lj1g3v1596930.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 4-like [Vitis vinifera] gi|359493899|ref|XP_003634689.1| chr1 19121367 19123177 -
4 domain predictions
 –
Lj1g3v1913910.1
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356515474|ref|XP_003526425.1| chr1 22755657 22772854 -
4 domain predictions
 –
Lj1g3v1932790.1
n.a. Potassium channel [Medicago truncatula] gi|357466431|ref|XP_003603500.1| chr1 23120386 23125730 -
4 domain predictions
 –
Lj1g3v1991510.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Cicer arietinum] gi|502132108|ref|XP_004501229.1| chr1 23404496 23408393 +
4 domain predictions
 –
Lj1g3v2071040.1
n.a. PREDICTED: potassium channel KAT1-like [Cicer arietinum] gi|502158392|ref|XP_004511133.1| chr1 24579311 24583533 +
2 domain predictions
 –
Lj1g3v2646140.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cicer arietinum] gi|502173262|ref|XP_004515288.1| chr1 30907425 30907912 +
2 domain predictions
 –
Lj1g3v2658230.1
n.a. PREDICTED: acyl-coenzyme A thioesterase 8-like isoform 1 [Glycine max] gi|356532006|ref|XP_003534565.1| chr1 30960001 30969944 -
4 domain predictions
 –
Lj1g3v2995590.1
n.a. n.a. chr1 34101330 34104134 +
2 domain predictions
 –
Lj1g3v2995600.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] gi|356568702|ref|XP_003552549.1| chr1 34101643 34104134 -
2 domain predictions
 –
Lj1g3v5034750.1
n.a. Cyclic nucleotide-gated channel C [Medicago truncatula] gi|357512559|ref|XP_003626568.1| chr1 61514605 61523809 +
3 domain predictions
 –
Lj1g3v5034750.2
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cicer arietinum] gi|502113948|ref|XP_004494812.1| chr1 61514605 61523606 +
3 domain predictions
 –
Lj2g3v0632140.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cicer arietinum] gi|502173262|ref|XP_004515288.1| chr2 9094596 9095949 -
3 domain predictions
 –
Lj2g3v0632220.2
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356531090|ref|XP_003534111.1| chr2 9116560 9127013 -
2 domain predictions
 –
Lj2g3v0632400.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356560063|ref|XP_003548315.1| chr2 9175145 9184779 -
2 domain predictions
 –
Lj2g3v0632400.2
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356531092|ref|XP_003534112.1| chr2 9187129 9211872 -
2 domain predictions
 –
Lj2g3v0835890.1
n.a. PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like [Glycine max] gi|356495224|ref|XP_003516479.1| chr2 13002709 13012942 -
4 domain predictions
 –
Lj2g3v2541790.1
n.a. PREDICTED: potassium channel SKOR-like [Glycine max] gi|356552003|ref|XP_003544361.1| chr2 35151176 35162227 -
4 domain predictions
 –
Lj3g3v0681550.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 4-like [Glycine max] gi|356542246|ref|XP_003539580.1| chr3 7415320 7421819 +
4 domain predictions
 –
Lj3g3v1089380.1
n.a. Cyclic nucleotide-gated channel 15 [Theobroma cacao] gi|508787143|gb|EOY34399.1| chr3 14606980 14609736 -
3 domain predictions
 –
Lj3g3v1089390.3
n.a. Cyclic nucleotide-gated channel 15 [Theobroma cacao] gi|508787143|gb|EOY34399.1| chr3 14607579 14612374 -
3 domain predictions
 –
Lj3g3v2097050.1
n.a. CNGC5-like protein [Trifolium pratense] gi|112293546|gb|ABI14924.1| chr3 26676191 26676471 +
3 domain predictions
 –
Lj3g3v2441700.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cicer arietinum] gi|502156876|ref|XP_004510678.1| chr3 30084681 30092711 +
3 domain predictions
 –
Lj4g3v0153960.1
n.a. PREDICTED: sodium/hydrogen exchanger 7-like isoform X2 [Cicer arietinum] gi|502141734|ref|XP_004504612.1| chr4 1839829 1866614 -
2 domain predictions
 –
Lj4g3v0153960.2
n.a. PREDICTED: sodium/hydrogen exchanger 7-like isoform X2 [Cicer arietinum] gi|502141734|ref|XP_004504612.1| chr4 1857724 1875492 -
2 domain predictions
 –
Lj4g3v0153960.3
n.a. PREDICTED: sodium/hydrogen exchanger 7-like isoform X2 [Cicer arietinum] gi|502141734|ref|XP_004504612.1| chr4 1857724 1864695 -
2 domain predictions
 –
Lj4g3v1823550.2
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356511634|ref|XP_003524528.1| chr4 25568120 25574906 -
2 domain predictions
 –
Lj4g3v1823550.3
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356563061|ref|XP_003549784.1| chr4 25568120 25572913 -
4 domain predictions
 –
Lj4g3v1983600.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Cicer arietinum] gi|502149997|ref|XP_004507740.1| chr4 27637804 27646676 -
4 domain predictions
 –
Lj5g3v0104760.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cicer arietinum] gi|502126040|ref|XP_004499157.1| chr5 838894 843879 -
2 domain predictions
 –
Lj5g3v0104760.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cicer arietinum] gi|502126040|ref|XP_004499157.1| chr5 838894 843879 -
2 domain predictions
 –
Lj5g3v0104760.3
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cicer arietinum] gi|502126040|ref|XP_004499157.1| chr5 839866 843879 -
2 domain predictions
 –
Lj5g3v0659940.1
n.a. CNGC5-like protein [Medicago truncatula] gi|357440409|ref|XP_003590482.1| chr5 9434967 9440113 +
3 domain predictions
 –
Lj6g3v1049130.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Glycine max] gi|356508396|ref|XP_003522943.1| chr6 11932547 11941160 -
4 domain predictions
 –
Lj6g3v1077850.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
4 domain predictions
 –
Lj6g3v1077850.2
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
4 domain predictions
 –
Lj6g3v1934080.1
n.a. PREDICTED: potassium channel KAT1-like isoform X3 [Cicer arietinum] gi|502078700|ref|XP_004486028.1| chr6 22036446 22039527 +
4 domain predictions
 –
Lj6g3v2274490.1
n.a. Potassium channel [Medicago truncatula] gi|357445481|ref|XP_003593018.1| chr6 26475069 26482462 +
4 domain predictions
 –
Lj6g3v2274590.1
n.a. PREDICTED: LOW QUALITY PROTEIN: potassium channel AKT2/3-like [Cicer arietinum] gi|502076890|ref|XP_004485488.1| chr6 26507978 26511739 +
4 domain predictions
 –
LotjaGi1g1v0096100.1
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14566954 14578142 +
5 domain predictions
 –
LotjaGi1g1v0096100.2
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14571761 14577342 +
5 domain predictions
 –
LotjaGi1g1v0182200.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT3G48010.1 cyclic nucleotide-gated channel 16; Swiss-Prot: sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16; TrEMBL-Plants: tr|I1JX56|I1JX56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182200 LjG1.1_chr1 35507413 35511941 -
5 domain predictions
 –
LotjaGi1g1v0279900.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A151TS64|A0A151TS64_CAJCA Cyclic nucleotide-gated ion channel 1; Found in the gene: LotjaGi1g1v0279900 LjG1.1_chr1 68346062 68352829 -
5 domain predictions
 –