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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014710
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 274 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 5.871s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0019469.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like isoform X1 [Cicer arietinum] gi|502083801|ref|XP_004487569.1| chr0 7729288 7732147 +
2 domain predictions
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Lj0g3v0043729.1
n.a. Cyclic nucleotide-gated channel 18 [Theobroma cacao] gi|508710451|gb|EOY02348.1| chr0 14361489 14366248 -
2 domain predictions
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Lj0g3v0043729.2
n.a. cyclic nucleotide-gated ion channel 18 [Arabidopsis lyrata subsp]. lyrata] gi|297811623|ref|XP_002873695.1| chr0 14361489 14363443 -
2 domain predictions
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Lj0g3v0055049.1
n.a. PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| chr0 17656151 17657382 +
2 domain predictions
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Lj0g3v0102909.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356508394|ref|XP_003522942.1| chr0 43832582 43836375 -
2 domain predictions
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Lj0g3v0102909.2
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356508394|ref|XP_003522942.1| chr0 43832582 43836375 -
2 domain predictions
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Lj0g3v0122139.1
n.a. PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| chr0 54595645 54596470 -
2 domain predictions
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Lj0g3v0122149.1
n.a. PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| chr0 54595749 54596887 -
2 domain predictions
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Lj0g3v0136039.1
n.a. PREDICTED: glutelin type-A 2-like [Cicer arietinum] gi|502145140|ref|XP_004505897.1| chr0 62609099 62609326 +
2 domain predictions
 –
Lj0g3v0150439.1
n.a. PREDICTED: glutelin type-A 1 [Vitis vinifera] gi|225435090|ref|XP_002284459.1| chr0 69993597 69993956 -
2 domain predictions
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Lj0g3v0165599.1
n.a. germin-like protein subfamily 2 member 4-like precursor [Glycine max] gi|359806913|ref|NP_001241578.1| chr0 78633673 78634521 -
2 domain predictions
 –
Lj0g3v0183609.1
n.a. PREDICTED: potassium channel KAT1-like [Glycine max] gi|356523521|ref|XP_003530386.1| chr0 89197053 89206682 +
2 domain predictions
 –
Lj0g3v0183609.2
n.a. PREDICTED: potassium channel KAT1-like [Glycine max] gi|356523521|ref|XP_003530386.1| chr0 89203948 89206682 +
2 domain predictions
 –
Lj0g3v0185859.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 4-like isoform X1 [Cicer arietinum] gi|502155450|ref|XP_004510076.1| chr0 90538778 90551274 +
2 domain predictions
 –
Lj0g3v0188049.1
n.a. PREDICTED: glutelin type-A 1-like [Glycine max] gi|356539076|ref|XP_003538026.1| chr0 91811719 91813999 -
2 domain predictions
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Lj0g3v0216519.1
n.a. PREDICTED: germin-like protein 9-3-like [Glycine max] gi|356544738|ref|XP_003540804.1| chr0 109965895 109966512 -
2 domain predictions
 –
Lj0g3v0257439.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356543090|ref|XP_003539996.1| chr0 133618409 133628451 -
2 domain predictions
 –
Lj0g3v0257439.2
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356543090|ref|XP_003539996.1| chr0 133618409 133628451 -
2 domain predictions
 –
Lj0g3v0272899.1
n.a. Ureidoglycine aminohydrolase isoform 1 [Theobroma cacao] gi|508776918|gb|EOY24174.1| chr0 141421723 141429538 +
2 domain predictions
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Lj0g3v0283359.1
n.a. PREDICTED: vicilin-like antimicrobial peptides 2-2-like [Cicer arietinum] gi|502082350|ref|XP_004487139.1| chr0 146903345 146904380 -
2 domain predictions
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Lj0g3v0283389.1
n.a. PREDICTED: vicilin-like antimicrobial peptides 2-2-like [Glycine max] gi|356547194|ref|XP_003542001.1| chr0 146905974 146907133 -
2 domain predictions
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Lj0g3v0305459.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] gi|356516029|ref|XP_003526699.1| chr0 159223007 159223903 -
2 domain predictions
 –
Lj0g3v0305469.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] gi|356516029|ref|XP_003526699.1| chr0 159223148 159229919 -
2 domain predictions
 –
Lj0g3v0317119.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356543918|ref|XP_003540405.1| chr0 165640735 165649498 +
2 domain predictions
 –
Lj0g3v0344639.1
n.a. phosphomannose isomerase [Cyamopsis tetragonoloba] gi|60617303|gb|AAX31279.1| chr0 180857689 180861047 -
2 domain predictions
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Lj1g3v0112720.1
n.a. PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1-like [Cicer arietinum] gi|502119608|ref|XP_004496677.1| chr1 1115191 1116808 +
2 domain predictions
 –
Lj1g3v0112750.1
n.a. PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3-like isoform X2 [Cicer arietinum] gi|502119599|ref|XP_004496674.1| chr1 1122988 1124902 +
2 domain predictions
 –
Lj1g3v0112780.1
n.a. PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3-like isoform X2 [Cicer arietinum] gi|502119599|ref|XP_004496674.1| chr1 1124904 1125683 +
2 domain predictions
 –
Lj1g3v0250220.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356498799|ref|XP_003518236.1| chr1 2720312 2721480 +
2 domain predictions
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Lj1g3v0948670.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cicer arietinum] gi|502124140|ref|XP_004498403.1| chr1 11965759 11966181 +
2 domain predictions
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Lj1g3v1135200.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356560067|ref|XP_003548317.1| chr1 14101048 14104993 +
2 domain predictions
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Lj1g3v1316980.1
n.a. Germin-like protein [Medicago truncatula] gi|357464681|ref|XP_003602622.1| chr1 15840253 15841309 -
2 domain predictions
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Lj1g3v1596930.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 4-like [Vitis vinifera] gi|359493899|ref|XP_003634689.1| chr1 19121367 19123177 -
2 domain predictions
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Lj1g3v1913910.1
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356515474|ref|XP_003526425.1| chr1 22755657 22772854 -
2 domain predictions
 –
Lj1g3v1932790.1
n.a. Potassium channel [Medicago truncatula] gi|357466431|ref|XP_003603500.1| chr1 23120386 23125730 -
2 domain predictions
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Lj1g3v1991510.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Cicer arietinum] gi|502132108|ref|XP_004501229.1| chr1 23404496 23408393 +
2 domain predictions
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Lj1g3v2071040.1
n.a. PREDICTED: potassium channel KAT1-like [Cicer arietinum] gi|502158392|ref|XP_004511133.1| chr1 24579311 24583533 +
2 domain predictions
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Lj1g3v2646140.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cicer arietinum] gi|502173262|ref|XP_004515288.1| chr1 30907425 30907912 +
2 domain predictions
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Lj1g3v2658230.1
n.a. PREDICTED: acyl-coenzyme A thioesterase 8-like isoform 1 [Glycine max] gi|356532006|ref|XP_003534565.1| chr1 30960001 30969944 -
2 domain predictions
 –
Lj1g3v2953570.1
n.a. PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] gi|356531790|ref|XP_003534459.1| chr1 33549793 33553420 +
2 domain predictions
 –
Lj1g3v2995590.1
n.a. n.a. chr1 34101330 34104134 +
2 domain predictions
 –
Lj1g3v2995600.1
n.a. PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] gi|356568702|ref|XP_003552549.1| chr1 34101643 34104134 -
2 domain predictions
 –
Lj1g3v3313150.1
n.a. PREDICTED: mannose-6-phosphate isomerase-like [Glycine max] gi|356527492|ref|XP_003532343.1| chr1 37016223 37018146 +
2 domain predictions
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Lj1g3v3329640.1
n.a. PREDICTED: pirin-like protein-like [Glycine max] gi|356569117|ref|XP_003552752.1| chr1 37761978 37763440 +
2 domain predictions
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Lj1g3v3833760.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43437392 43439432 -
2 domain predictions
 –
Lj1g3v3833840.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43453262 43454535 -
2 domain predictions
 –
Lj1g3v3833870.1
n.a. PREDICTED: germin-like protein subfamily 1 member 18-like [Cicer arietinum] gi|502165338|ref|XP_004513533.1| chr1 43463804 43465746 -
2 domain predictions
 –
Lj1g3v3833880.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43464028 43465747 -
2 domain predictions
 –
Lj1g3v3976010.1
n.a. 2-aminoethanethiol dioxygenase [Medicago truncatula] gi|357508797|ref|XP_003624687.1| chr1 47153587 47156663 +
2 domain predictions
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Lj1g3v4483900.1
n.a. glycinin subunit G7 [Glycine max] gi|76096944|gb|ABA39287.1| chr1 52695699 52697996 -
2 domain predictions
 –