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LotjaGi3g1v0183800.3

Overview

Field Value
Gene ID LotjaGi3g1v0183800
Transcript ID LotjaGi3g1v0183800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:25746430..25750044) extracted from Lotus japonicus Gifu genome v1.2.

ACTCACAAGCTCTGTGCTTCTTTGATGTTTCCTACCCTCAGGTTCCAACTCACTCTTTTTTTTTATTTTTATTTTTAATT TGTGTTTAATCATTTTCTGTTTTCCTCTAATAGGAGTTATGAAAATCCTCTTAGACTGGTCATTGGGAGGTAAGATTCTC AGTTTGCTTCTTTTTAATTATTATTATTATTATTGGATGGAATAGGACCTTGGTTTGGTGTTATGCATTGGGTTGTAGAT GAGGGTATTGGTTCTACTAGAATTGTGTAATGAATAGTTCTACTTTTTTTTTCTGATTAGTCTCTGCATCAAGCACCCAA ACTTATTTGGTGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTATATGATTCAAATATCTTAGTCGCTTATAGA AGGCCGCGTCCAGAATGGCTTGCTCAGCAGTCTTTTGTATTGCAGGTAGACTGTACTTTCCTATCATTTTATTCTATGCT ATGAGAAATTATGCTAGGCCAGGCTGTACAATAAACTTATGTTCAATGGATTTTTCTTTGTGAAACCTACAAATTTGAGT AAAATTTTATTGCAGAATCTTATAGTCTCGTCCTTTTTCTTCTTTCAGCATTCTCTTTCACCTGAGATTGCAGTTCATGG TATCCCTATAAACAATTTCTCCCGATCTGGAAGTGGAGGTGTAAATTTATCTAAATTATCAGTGGGGCTGGACCTGAAGG AACCTATGAGTACAAAATGGAGCAGCACAACCAGCATAAAATTCGAGGTTCAGCTTCACTTTTCATGAAATTGACATAAC ATCAAAGCACAGTGTGCATGTGCTTCCTTGTTTTGCATTACCCTCTGATTTGGTTTATAGGCAAAGTGGAAACTGACATT GTAAACAATCATGCAGCATGTTCGTCCATTGAATGATGATGGTCGTGCTATAAGTAGAGATTATGATGGATTTCCTCTGA CTTGCAGGTAGTCAAGAATTCTAGTATTGCAGTTTTCAAAATATTAACCTGATTTTGACCATATGATGTACATTGCTTGT GCAGTGGCAGTACACATGACAGTATGGTAGTGTTAAAGCAAGAATCTCGATTTGCCAAGGCAAATGACCGTAGCTTTTTT CATGTAATAAGATATACTCTTTTTTTCACCTTGCTTTTTACTTCCTATTTATATGGTTGTGAATCAATTAGTTGCATTTT TTTTTATCACAAATGAACTAGTTGCATATGTATTCCACTGACTGAATGCCTGGTCTTTTCAGTTTAATCTTCAAATAGAA CAAGGTATTCCAGTTCTTTCCAAGTGGATACTTTTCAACCGATTTAAATTCGTTGCTTCAAAGGGAGTCAAACTTGGACC AGCATTTCTTTTAACAAGGTTGGTATTTTCTAGCAGTTTAAGAAGATAGAAGTTTTCTGTTTGACTCCGCTATTAGGGAA ACAACCATGTGGAGCAGGATTTATATTAAAATTCAGTGCTTGGATTCAGATATATAACACATTGATACAAACTTTACGAT TAACCTGAAATTCAATTCCCCTATTTTCGTTTTTCTCTTGTTTTGTTTGACAAGCAGTTATCTTTGACTATGTCATTTTT TTCACTATCATCCTTACCTTTTCTTCCAACAGACTTACAGGTGGTTCAATTGTGGGGGACATGGCTCCTTACCAAGCATT TTCCGTTGGAGGGCTTGGGAGTGTGCGAGGCTATGGTGAAGGAGCTGTTGGATCTGGGAGATCATGTTTGGTGGCTAACA GTGAACTGACGCTCCCTTTGGTATGTATTTCAATAGCTTTACGAACTGCGATCTTATAATGTTAAATTGGACAGATATGT AACATTTTCCCCTTGAATATTCTTATTATGCCAAACGAATCTTTCTTTGTTGAAGAATTTGCTTTCCTTGAAGTTTCTTT TTCTTTTTTGAATATCACTTCCTGCTATGTCTAGTAAGATATTGGTAGGGACGACCTCATGCTCACAATCTTTGGGAAGA ACTGATTTTACAACTATAGTTTGTAATATCAGGCATCTCATGTTTGAAGACCTAATATTAAGTGTAATATCTTCCTTGAT AAATGTAGAATTGTTAGGTTATAATTTATGTTGAAACTTTCACTTTTCTCCTCATTACTGATTTAAAAGAGATCAATTTT TTTTTTCTCATGAGCCTTTGGAAATGAATCCTATCCAGTGTATCCGAGTCAGTCTATCCTTCCCTCCCACTATGCTTCCA CAAGTTACAACTAGAAATTCCTTGTATATGATTGTAATTCCTGAGATCTTTTATTGCTAAGTATTCCTAGCCTTTACTAA ACTACTTGATGTCTTCTTTACACAGACTAAGATGTTAGAAGGTGCCATTTTCTTGGATTGCGGAACAGACTTGCGGACTG GTCATCTTGTACCTGGTGAGCAATATCATTCTGCTCAGAATCAGATACTCAAATTACTTCCAAATTTTTTAATGTTCTCT TTCTTGATTATCTTGCTAATATTTATATGATGTATCTACAACTTTTAGCATAAATAAGCGTTACATTTTTTGTCTTCTGA GGAGACTTAGTTAAATTTGTTTGTTCAGTGAGGCAAGTTCTTGAGATAGGGTTCTTTTGCTTCAGATTTTTCTGATTTCA TGCTTTACCAAATTGAAATTGATTACCGAAATAAAACTTTCTCTGACTAAAAGTCACTTGTTTCATGTAGTACCTTTTTT TATGAAGTTGATTTATGTAGTACATTCAAAAGTCTATCTATTACCGTCAAGGTGGGTGAAATATTTACAATTATGATAGT GGTATTCGAAGAACAAAATAAAAAAAAAGGTTGATTGGGGTGTGGAGAGTTTTTTGCACTGGGGAATGTTAATTGAAACA CTGGAGTCATCCAAAATTTGACCAGTGAACATGAAGTTCTGAGAACAAATTTTGCTTCTGCTTAATTTTAAATTGAACTT TTCTGTGGTAGGAGACATTCAGTTTAGTTCTTTCATGTATTCTAGTATTGACTTGTTCAAGTCTACATAAAAGCTCCATT TTATTGAGTTAGTGGGAAAAGGGAGCTTAGGTAGGCTAGGCCAACAAGAACTGAGTAAATGATTCTTGTTGAAGAAGTCT CTAGGACCATTTTGTGTGGTAAAATAAGGGCTATTATTGTAAGGAACATAGAGCTGTGGCCAAAATGTTCCTCGATATTT AGAGTTCCGTCAGAGTTTTATGATGAGTTGGGTACCTTATGCCACAACATCAGCCATTATATTCCAGTGACAAGTTGCTG TGTTTTCATTGACATATTGTGTTTTTCATAGCTGCTGGTTTGCTTTGCTATGCTATTATCTTAAATTGAACTGCTTGATC ATGTTTAGGCTCACTGCACATAATTTTTAAGTCTCTAGCCTAAAACCATATCAATTATCAAATGTGCTCTCATGGTGTTG ATCCCTTGAAAATTCAGGAAATCCAGCCTTGAGGCAAGGTAAACCCGGATCTGGTGTTGGATTGGGATATGGACTTCGAT TTAAATCACAGTTTGGTCATTTCCAAGTTGATTATGCCGTTAATGCGTTTCAGCAGAAAACTCTCTATTTTGGCCTCAGC AACCTTGCTTCATGA 

CDS sequence (LotjaGi3g1v0183800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTCCTACCCTCAGGAGTTATGAAAATCCTCTTAGACTGGTCATTGGGAGTCTCTGCATCAAGCACCCAAACTTATT TGGTGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTATATGATTCAAATATCTTAGTCGCTTATAGAAGGCCGC GTCCAGAATGGCTTGCTCAGCAGTCTTTTGTATTGCAGCATTCTCTTTCACCTGAGATTGCAGTTCATGGTATCCCTATA AACAATTTCTCCCGATCTGGAAGTGGAGGTGTAAATTTATCTAAATTATCAGTGGGGCTGGACCTGAAGGAACCTATGAG TACAAAATGGAGCAGCACAACCAGCATAAAATTCGAGCATGTTCGTCCATTGAATGATGATGGTCGTGCTATAAGTAGAG ATTATGATGGATTTCCTCTGACTTGCAGTGGCAGTACACATGACAGTATGGTAGTGTTAAAGCAAGAATCTCGATTTGCC AAGGCAAATGACCGTAGCTTTTTTCATTTTAATCTTCAAATAGAACAAGGTATTCCAGTTCTTTCCAAGTGGATACTTTT CAACCGATTTAAATTCGTTGCTTCAAAGGGAGTCAAACTTGGACCAGCATTTCTTTTAACAAGACTTACAGGTGGTTCAA TTGTGGGGGACATGGCTCCTTACCAAGCATTTTCCGTTGGAGGGCTTGGGAGTGTGCGAGGCTATGGTGAAGGAGCTGTT GGATCTGGGAGATCATGTTTGGTGGCTAACAGTGAACTGACGCTCCCTTTGACTAAGATGTTAGAAGGTGCCATTTTCTT GGATTGCGGAACAGACTTGCGGACTGGTCATCTTGTACCTGGAAATCCAGCCTTGAGGCAAGGTAAACCCGGATCTGGTG TTGGATTGGGATATGGACTTCGATTTAAATCACAGTTTGGTCATTTCCAAGTTGATTATGCCGTTAATGCGTTTCAGCAG AAAACTCTCTATTTTGGCCTCAGCAACCTTGCTTCATGA 

Protein sequence (LotjaGi3g1v0183800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFPTLRSYENPLRLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILVAYRRPRPEWLAQQSFVLQHSLSPEIAVHGIPI NNFSRSGSGGVNLSKLSVGLDLKEPMSTKWSSTTSIKFEHVRPLNDDGRAISRDYDGFPLTCSGSTHDSMVVLKQESRFA KANDRSFFHFNLQIEQGIPVLSKWILFNRFKFVASKGVKLGPAFLLTRLTGGSIVGDMAPYQAFSVGGLGSVRGYGEGAV GSGRSCLVANSELTLPLTKMLEGAIFLDCGTDLRTGHLVPGNPALRQGKPGSGVGLGYGLRFKSQFGHFQVDYAVNAFQQ KTLYFGLSNLAS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 2 331 330 4.4E-197
PANTHER 2 331 330 4.4E-197
Gene3D 15 329 315 2.3E-17
Pfam 25 324 300 3.4E-24

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Outer membrane The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0183800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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