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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0194400 |
| Transcript ID | LotjaGi3g1v0194400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G01360.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8LED3|TBL3_ARATH Protein trichome birefringence-like 3; TrEMBL-Plants: tr|I3SZR6|I3SZR6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0194400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28225388..28227946) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACCCTTCAGGAACAATGAAGTTTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACAACCTGTGCTCTATT CTTCATAGCAGTGTTGTATGCAGAGAGACTCAGCTTCCTATCTTCAAGCTCTATTTTCAAGTTCAAAACATGTCCTAGAA AGCACAATAAACCAAAATCTAGTAAGTTATAACTTCACCAATGCCATAACTATCGTTGTTTCTTACTAATTTGGCTCTAA TGCAGTGATCTCCCATAATGTGGTTGACCAACAGATGAGAGAAAAGTAGAGGATGTGCTTGTAAATGCCTCATGGAATGA TGATAGGTTTGATTTTGATCCAGAGGAGTGTAATCTTGCTAATGGAAAATGGGTTTTTAACCATTCAATAAGGCCTTTGT ACTCAGATACTAGCTGTCCTTACATAGATAGACAATACTCTTGTGTCAAGAATGGAAGGGAAGATTCTGACTACCTCCAT TGGGAGTGGCAGCCAGAAGATTGTACCTTTCCCCAGTGAGTCTCACCCTTCAACATGTTCTATTCATCTTTCTATTTTTA CCATTGAGGTCTGTCTAAATTTACTATGTGCATGTTTGGTTCTCCAGTGGGAACCCCAGAATCAATTCTCAGTGAATAAA ATCACTTTTGTATGACAATATAGATCCTTGAGAGTCATCTCTCATAGAAGCCGGAGAGAGTAGCTTATGTGTTAACATAA TCAATTATGAGATTTTACAACTGGATTTCACAACATTATTCCTACAAAAATCACTTTTTTTCATAAATGTATCAAAACAT AAACCACTTCACTTTTAACTCGTTTCAATTCATTTTGAGCATAATCAATTTTACCGAAATCAACTCTATTCAAAATCAAT TCTCACAACACTGATGCAATCAAACACGCATTATATATTTGGTAGATTTAATCCAGAGCTAGCCCTCAAGAAGCTTCAAG GAAAGAGGCTGCTATTTGTAGGGGATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGTTTGGTCCAAAGTATCATA CCTGAAAAGGAAAAGTCAATGAAACGAGGGCGTATTCATTCAGTCTTCAAAGCCAAGGTAAATGATATATTGAGTAAATG GTCAAAATATTCAAGCATTTCAAACTCTAATAGATGCTCTTATGGTTCTGAATATAATTGCCAAAAAACACACAAGAATA GTTCCTAGGAACTTTTTTTTGAGTTGAACATATTGCTTAACTCTTTGATATCAGGACACTGAGCTGAAAAGCAAAGCTAA TTCTTGTAGGAATATAATGCTACCATAGAATTCTATTGGGCCCCATTTCTTGTTGAGTCCAACACTGACATTCGTATCAT AGGAGATCCCAAGAAGAGGATAATCAAAGTGGATGAAATCACTGAGCGTGCCAAAAACTGGACAGGAGTGGACATCCTTG TTTTCAACACCTATGTTTGGTGGATGAGTGGTCTCAGGGTTAACGCACTGTAAGTACTCTTTGAGTCTAGCATTACTTGA AAGAAATGATTCATAGACATTTGTATAGTGCAGACATCTAACAGGTATTCAAAGTGAGAAAAGAAAACAACCAAGAAATA ATGGATGTGATAAGACGAGCAAAATAGAAAGAAAAATAGTGTGTTTGTGATTCTGTTGGTCATCTGCGCTATTTGGTGTC TAAGTATCATTACTCACTTTTTTTACAAGATTTGATCTTTAACCACAGGGTTGAAATGCTGTCTAATGTATAGTTTAATT GCAGATGGGGTTCATTTGCCAATGGAGAACAAGGGTATGAAGAACTGGATACACCAGTTGCTTACAAGCTAGGTTTGAGA ACATGGGCCAATTGGGTAGACTCCACAATCAATCCAAACAAAACCCGGGTGTTCTTCACTACTATGTCCCCTGCACACAC AAAGTATCTTTCTGTCTCTCTTTCTTTACCAAACTTCAAGTTTCAGCTTTCTATAACAACTTATGTTTTATTAGCATTTG GATCAATTTCTCTTTCTTCAGTCTTCAGAATCCATTCTGACACCTGAAGCTACTAACAAAAGCTTCTCACCAGAATTGAT TTTAGCTTTAGAATCAATTCTACAAGTATTTACAAACATTCACTTGTCAAGCAAGATTAGAAAGAAAAAAACTGAAATTT AGTGAAATCTAGACATAAGAAGATGATGATTCTAATTTTCTAACAATTTAAATGTGATATGTTTTCAGAAGTGCAGACTG GGGCAACAAGGATGGTGTTAAATGTTTCAATGAGACAATGCCTGTAAAGAAGAAGAATCACTGGGGAAGTGGTTCTAATA AGGGTATGATGAGTGTGCTGGCCAAAGTGGTGAAGAAAATGAAAGTTCCTGTGACTGTCATCAACATCACACAAATCTCA GAGTACAGGATTGATGGTCATTCATCAGTTTACACTGAAACTGGGGGTAAGATGTTAACTCAGGAGGAAAGGGCTAACCC ACTAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTTGTAA
CDS sequence (LotjaGi3g1v0194400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTTCAGGAACAATGAAGTTTCTCAGAGGAAAGCTTCCTCTGCCCATCATTATCACCACAACCTGTGCTCTATT CTTCATAGCAGTGTTGTATGCAGAGAGACTCAGCTTCCTATCTTCAAGCTCTATTTTCAAGTTCAAAACATGTCCTAGAA AGCACAATAAACCAAAATCTAATGAGAGAAAAGTAGAGGATGTGCTTGTAAATGCCTCATGGAATGATGATAGGTTTGAT TTTGATCCAGAGGAGTGTAATCTTGCTAATGGAAAATGGGTTTTTAACCATTCAATAAGGCCTTTGTACTCAGATACTAG CTGTCCTTACATAGATAGACAATACTCTTGTGTCAAGAATGGAAGGGAAGATTCTGACTACCTCCATTGGGAGTGGCAGC CAGAAGATTGTACCTTTCCCCAATTTAATCCAGAGCTAGCCCTCAAGAAGCTTCAAGGAAAGAGGCTGCTATTTGTAGGG GATTCACTGCAAAGAAACCAATGGGAATCTTTTGTCTGTTTGGTCCAAAGTATCATACCTGAAAAGGAAAAGTCAATGAA ACGAGGGCGTATTCATTCAGTCTTCAAAGCCAAGGAATATAATGCTACCATAGAATTCTATTGGGCCCCATTTCTTGTTG AGTCCAACACTGACATTCGTATCATAGGAGATCCCAAGAAGAGGATAATCAAAGTGGATGAAATCACTGAGCGTGCCAAA AACTGGACAGGAGTGGACATCCTTGTTTTCAACACCTATGTTTGGTGGATGAGTGGTCTCAGGGTTAACGCACTATGGGG TTCATTTGCCAATGGAGAACAAGGGTATGAAGAACTGGATACACCAGTTGCTTACAAGCTAGGTTTGAGAACATGGGCCA ATTGGGTAGACTCCACAATCAATCCAAACAAAACCCGGGTGTTCTTCACTACTATGTCCCCTGCACACACAAAAAGTGCA GACTGGGGCAACAAGGATGGTGTTAAATGTTTCAATGAGACAATGCCTGTAAAGAAGAAGAATCACTGGGGAAGTGGTTC TAATAAGGGTATGATGAGTGTGCTGGCCAAAGTGGTGAAGAAAATGAAAGTTCCTGTGACTGTCATCAACATCACACAAA TCTCAGAGTACAGGATTGATGGTCATTCATCAGTTTACACTGAAACTGGGGGTAAGATGTTAACTCAGGAGGAAAGGGCT AACCCACTAAATGCAGATTGCATACACTGGTGTTTGCCTGGAGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTT GTAA
Protein sequence (LotjaGi3g1v0194400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPSGTMKFLRGKLPLPIIITTTCALFFIAVLYAERLSFLSSSSIFKFKTCPRKHNKPKSNERKVEDVLVNASWNDDRFD FDPEECNLANGKWVFNHSIRPLYSDTSCPYIDRQYSCVKNGREDSDYLHWEWQPEDCTFPQFNPELALKKLQGKRLLFVG DSLQRNQWESFVCLVQSIIPEKEKSMKRGRIHSVFKAKEYNATIEFYWAPFLVESNTDIRIIGDPKKRIIKVDEITERAK NWTGVDILVFNTYVWWMSGLRVNALWGSFANGEQGYEELDTPVAYKLGLRTWANWVDSTINPNKTRVFFTTMSPAHTKSA DWGNKDGVKCFNETMPVKKKNHWGSGSNKGMMSVLAKVVKKMKVPVTVINITQISEYRIDGHSSVYTETGGKMLTQEERA NPLNADCIHWCLPGVPDTWNQIFLAML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 2 | 426 | 425 | 5.7E-223 | ||
| PANTHER | 2 | 426 | 425 | 5.7E-223 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 34 | 5 | - | – | |
| Phobius | 35 | 427 | 393 | - | – | |
| Pfam | 84 | 137 | 54 | 7.1E-21 | ||
| Pfam | 140 | 426 | 287 | 3.1E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0194400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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