Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0198500 |
Transcript ID | LotjaGi3g1v0198500.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT5G01620.1 TRICHOME BIREFRINGENCE-LIKE 35; Swiss-Prot: sp|Q8RXQ1|TBL35_ARATH Protein trichome birefringence-like 35; TrEMBL-Plants: tr|K7KCY1|K7KCY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0198500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29015962..29022747) extracted from Lotus japonicus Gifu genome v1.2.
CTATCAGAACCTGCACTAAATTCTGATTCTGTCATTCTGAGTACTCTTTATGACACCATGTTAGTATCAATTTGAAGCTG AAACTTTGTATTATTTCCTCTTTCTTATTCAATGATATAACATGCTTTTTCAAATCTCTGACTCAGTCACTGAAGCAAAA AATGCAGAGATGGAAATGGAGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTTCATAGCAT TCTCAACCTTCCACAGTGAACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAGAAGCTTCC TATGTCAAACCCAACCTCTCTGGTCAACTCAAGCAAGCTCCAGGTGGGTGCACACAACTTGTTTGCTATTATGCTTCACT GAAAACTTCAAACAGAAATGATAAATTTTGGTCAATTTTTATGCTTTGTGAGTTTGATTTGTGCTTTCTCTTTGACTTGT TGAAATGGGTTTTTCTTTTTTTGGATTTTAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTGGAGTATAGTGG CCGGAAAATTGCTTGGTCTGGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGATGTTTTCTCGG GCAAGTGGGTCTTTGATAATGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATCAATTGGCCTGT CACAAGCATGGAAGGTCTGATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAGAGGTGATTTCT CTTTGAGCTTTTTTTTCTCCCCTTTGAGCATAGTAAGATCATGGTTTTGTTGGTGCATGAGTGGGAACTAGCCAATTCAA AGTTCCAAGGTCATCATTGTTTTGTGAAGTTATGTATAACCAAGATAGGTTCCGTAGAGTTTCTATTTTTGGTTCAAAGA AAAACACATTAATGCAAATGGGTAAGACAAATCCATGTGAACAATACTACAATGCTACAACATGAAACACTACAAATATA ACATGCTTGCTCACAAAAACATAAACCAATATAACAGGTAGGCAATAGATCAAAACATCCTCCTTAAACAGATTTGATTT CAAAATCAAGCCTCTAGCTAATTTTTCCTTTGATGCCTCTAATTCCGAGGCCCTCTGCTGGAGCTGGTGCAAAGGAGACC AACCAAGAACAAGCGGCTCAGCCGCTCCAATCTAGCTTTTCAGAGGTAGTCTGAAGTCAATCAGAAGTGGTGAGGGAAAG AGAGGTGGGAAAATGTTAAAGGTGATGGTGGAGAGAGGGAACATAGAAGGTGGTGGTGGTGGTGGTAGCGGCGGCTGGAT GAAGGAAGAGAAGGATATGGAAACTAAAACAGAAAGAAAAAATACAGCTAGAAAGTAGAAACTAAAACCCCTCCCTTAGG ATGGAGGGAAATCCAACTATGCGGCGGCTGTAGCTTGAAGAAGAGGGTTTTCAGTTTCTGTTTCAGAGAGGTGAGAATTT TAACTAGTTCTGTAGAGTTCCGTTCCAAGTGGGAGTGTGGGACATTTGTTCTATTGTTTCTGTGGAATTGGAGTTAGAAA AATCACAACAATTTGTTCTGCTTAAAAGCATCATATGAAAATGGTAATGATTTTTATAACCAAGTAGGTTCGTTATGCTG GTCTTCACTGATTTCTTGTCTATAACAGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGCTAATGTTT GTTGGGGATTCACTAAACAGAGGGCAATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGATAAGAGATC AATGTCACCAAATGCCCATCTTACCATCTTCAGAGCAGAGGTAAGAACCCTATGCTTTAATGTAGCCCCCTATACAATGT TGTCTTCTTCCTTCATTTCACTATTTCTTATTAGACCACTTGATGTTCTAAGACATTGGATTGATGGGGTTTGGTTCACC AGTACCACTGTCTGAGATTCTCCTCATCTGCACGCTGCTAACTTTTGTGCTAATTATCAGGAGTATAATGCAAGTGTGGA ATTCCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCCGATGATCCTGTAAATCACAGACTAGGTGAACGGATAATTCGTC CTGATTCTGTTCTTAAGCATGCATCACTGTGGGAGCATGCTGATATACTTGTTTTCAACACATACTTGTGGTGGAGACAA GGCCCAGTCAAGCTATTGTCTGTATCAGTTTATCACTACACAATTGGATTTTTAACGGGAATTTGTCTACTCGATTCTGA TTGGATATTCCAATTTGTAATTTTTCAGATGGACTAGTGAAGAAAATGGAGCTTGTGAAGAATTAAATGGACAAGGAGCC ATGGAGTTGGCCATGGAAGCCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTCAAGAAGCGTGTCTTTTTTGTGAC CATGTCCCCAACACATCTCTGGTGAGCACCCAATCTAGATTTTTTATGATCCCATCAGAAAATTTTTTTGCCAGTATGCA TTATTGAACATGAACCTTTGGCCAGAGGTTATTCTAATTCTTTATTCAAACTCACATTAGTTAAAAGGGGACAACATTAC TGTTGGCTGGTTTTAAATGATTAGTTCATTATTTCTTCTGCATTCTTAGAACATGTGGCAGAATTATGTTAGTGATTTTC ATTCATCTTATATGCTAGTTTTAATTTGGATAATCCAAACCAAAGTTTTAACTTCCTGCCTTCACCCCTCTTCCATGGCA GTCTGCAATTCTGCCAAAATTGTCACTGTAAAAATCTTACTATTTCTGGTTTGAATATTGACTTTCTTTTGATATCATAT ATATTGGTCATGTAGTATACATTCTATTGTGTTAAAATATAAAATATGTTTTAGCTGCCAAGTTTTAGCCACATAAAGAA AATGTCAGTGTAATCAATGTCATATGTGTTTGTGCATAGTGCATACCCCTTGGAAACCAACCGAACTTCAATAGAGCCAA TAGGACCATTAGAATTTACTTTAGTAGTGTAAATATACTTACACCTACACCCATGACCCAACATATTTCTTCCCCACGGG CAAAGGGACCAAATCCCAAGTCTCATTATGTTCATCGGACAACATTTCCTCCATATCTCGCTGCCAATCAGCATGTATTA AGGCATCTGAAAGAGACTTAGGGACAAAGGACTTAAAGGTAGATGATAAATTAGTTGAAGATACATAGTAAGAGATAGAG TAGGTGCAAGTGGGTTTACCTTTACATAAGACTATGGGAAGGTCCAGAACACTAGAAGGATCTGTAGACACCGGAGGAGG TTGAAACAAAGGTTGAGTATCCAGTGGAGAATCACCAGTTTTCTGCTACCGACTGTATGTCTTCTAGCATAATTCGAAAC ATGTACCAGTGGTCCAGTAGGAGTCTATGGAGCAGGGTAAGTCATGGTATAAGTTACGGAGGAATTATATGACTCCCACA CAGGTAAAGAGAATGACAACCCATCAATGGAGTGGTCCTCAAAGAACTTAACATCAATAGAGACAATATAGCGACCAAGA TCTTGAGCGAAACATCGACACCCTTTCAGGGTACAAGAGTAGCCCAAGAGCACACACTTCAAGGACATTAGGTCCAACTT AGTCACTTGAAACCTGACATCAAGAACAAACGATGTGCATCCACATACTCTTGGGGAAGGGGAACAAAGATCAAGAAGGG AAAAGGATAGAATAAGGAACAACTCCATTTAATATAGATGACGACATGCGATTAATTAAATATGCAGCAGTAAGAGCTGC ATCTCCCCACGAAATTTTAGGAACTTTCATATATAACACTAGCCTGGGCAACTTTCACAAGATTTCAACTTTTATGCTTA GCCACCCCATTCAGTTCTGGTGTAACAATGCGGGATGGTTTATAAATCATATCATGTTCATTCATAAAAGCAAGAAATGG TACAAACAAATATTCTTTGGCATTATCACACCTGACATTCATATTGCGTACGAACTTCAACACAAAAATTACAAAATATA ATGAACTACTCAAATATGGATTTCAATAAATATAACCATGTTGTATGAGAATAGCCATCCATAAATGTAACAAATGACTT ATAATCTAACATAGAAGTCACAGGGCAATGACCCCCACACATCAAAATGGACAATGTCAAATAGGGATGTAGCACTTATA ATCAAATGAAGTAAATAAACACTACAGTGATGTTTAGTGAACTGGCATGACTCACTAGTCAGGCTTGATATGGACTCTAA TTGAGAATATAGCTTCCTAAGAACACCTAAAGACAGACAGCCAAGGCGACAGTGAAGCTGGAAAGGGGATAAGCTACTGG TAGGAGAAGTTGTTGATGCCTTCAGGGCTCCTTCCACTTGGTACAATCCATCATATACACTTCCTCTACCAGTAGTCCTT TGTGGCAACAGATCCTGAAATTCACAAGAATCTGAAAATAAAGTTAAATAGTAGTTCAAAGTAAGTTTATATCACGACTA AGTGAGGGAAGATTACAAGTAAACTCAGGTAAATACAAACACTAGACCATCAAAAAGAGTTGTAGACAGGTGTATACTAG AGGAACTGAAGGAAGAAAAGATACTTGAATCCCTAGTTATATGATCAGTAGCGCCAGAATTAGTGGCCCAACCCATGACG TAGAGGATAGACACGCAATAGGATTACCTGTTTGGACAAATGTTTGGTGGAGGATGAAGGTGAACTAATCACTCATACCC ACCTTACGTCTGTCGTGACTGGGAAGCAGGGTTAGCAAAGTGAGGATTTCTTGACCACTGTGAATACCCCACATTTGATC GCTCTGCTTTAGTAGTCCATTCTGGTACAATCACCACGATTTCCTCCGCCTCCACTGTGATTGCCTTGAGTTCTGGAATG GACTACTAAAGCAGAGTGATCAGATGAATCAACATCAGTAGTAGATCTAGGTTCCTTAAAAGAAGAATGCATGACCTGAG AGAGAACATTAGTGAGATTATCTACCTTTTATGCTCGACTAGATCTGAGACCTCACCACCTCATACTCTAGGCAAGGCTA GATAGCAAACTCAAGGCTATTATGAGTTTCTTTTGTTGGGTTATCATCTCCTCTACAAACTTTCAGGCCAATAGAGAAGT TAGCTCCTCAATATATTTCTTAAACTCTAAGAAATAGGCCATCACCTTACACTTGTTATGCTTTGGGAAAAACATCTCTT GCTATAGGAGCTTATGAAAAAAAAAAGAACTCTTGCAATAGGTCATAGACACGATTCAAATTATCCTACCTTCCATAAAT AAATTGCAGAAAATCCCACAAATCCTTCATTGTTCTGTAGTGGGTAGTAAGTAATGACCGCATCCCGCTTATCAACAAAA CTCACCAATAAGGCCAAAATACACTTATCCTCTGTGCTGCATTTCGCGGCTACCTTTGGGTCCACTAGACATCTCTATGT CAAATGTCCATCCTTTCCCATTCCTCGTAAGCTGGCCTCCACAAAATATCTCCACTCCACATAATTCTCACCATCCCTAT CAAGCTTTATATAAGTGTATATGGACAAAGTTGTCATAAATTCCGTTCAGTGACCGGGGCCTTAGAGCTCTCGTCAAGTG CTAAATGCAGTCTCCCTGATATATATAATACTAAGTTAGGAGTGAAGTACATTTTGCAGTACAAAGTACGGGGTACAAGT ACATTTGATCATAACCCTAACTCTTAACATCAATGCAAATGAGAATACAATAATAACCAGATAAATGATAATATTTTATC ATGTGATTTACGTCTATAATGATTCATCCTAACTCTTAAAACACTAAATCTATGTTTTGATTTAAGATTTGTATTTTTCA TATCAATCTTTTCACTTATTTTATATGTTGCAATATAGTCTGCTGCATCATCTTCTGTGTTGTTTTTGTGTCCCATGTCA TGTTTGTGCTTCCTGGTTTTTAGATGCCACTTATTGGCCTAGTGGTCACCAGGTGTGTACTAGGTTCCCCTTCTCCCCTC TGGTATGATACAGGCTCAACATTCCCCTTTCCCCAAATTAGGCCTCAATTTGGTTCCTCCCAGATGCTTTAAAAATAAAA GTTTTACTTTTTTATTCAAGTTGTTTATTTAATAAAATTGGATATCAAGCAGCAATACCGGTAGTACCATTCTGCATGCT AATTGCCAAATGCAAGAGAGGTATTAGGTATGATGCAGGTGACATGAAAACTTGTCTACGAATGCCGAATGTTACAGTAA CAGAGTTCAGGAAAAAGATGCATTCTCTTTGTTATTGATATTTTCACACTTACTAGTATCTTAACATCAACATAGGGAAT CCATATATCCCATGCTCTATATTTTCTTACTGAAATGAATATTATTCTGATTCAGGAGCCGAGAGTGGAAGCCAGAAAGT GAGGGAAACTGTTATGATGAAAAGGACCCCATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCTACAATGAG AAGCGTGGAGAAGATCCTAAGCAGTTTAAAATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTATAGGAAGG ATGGTCATCCTTCCATTTTTCGCAAATTTTGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTTACTCTGAT TGCATACATTGGTGCTTGCCAGGGGTACCTGATGTGTGGAATGAGCTACTATTCCACTTATTATAG
CDS sequence (LotjaGi3g1v0198500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATGGAAATGGAGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTTCATAGCATT CTCAACCTTCCACAGTGAACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAGAAGCTTCCT ATGTCAAACCCAACCTCTCTGGTCAACTCAAGCAAGCTCCAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTG GAGTATAGTGGCCGGAAAATTGCTTGGTCTGGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGA TGTTTTCTCGGGCAAGTGGGTCTTTGATAATGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATC AATTGGCCTGTCACAAGCATGGAAGGTCTGATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAG AGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGCTAATGTTTGTTGGGGATTCACTAAACAGAGGGCA ATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGATAAGAGATCAATGTCACCAAATGCCCATCTTACCA TCTTCAGAGCAGAGGAGTATAATGCAAGTGTGGAATTCCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCCGATGATCCT GTAAATCACAGACTAGGTGAACGGATAATTCGTCCTGATTCTGTTCTTAAGCATGCATCACTGTGGGAGCATGCTGATAT ACTTGTTTTCAACACATACTTGTGGTGGAGACAAGGCCCAGTCAAGCTATTATGGACTAGTGAAGAAAATGGAGCTTGTG AAGAATTAAATGGACAAGGAGCCATGGAGTTGGCCATGGAAGCCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTC AAGAAGCGTGTCTTTTTTGTGACCATGAGCCGAGAGTGGAAGCCAGAAAGTGAGGGAAACTGTTATGATGAAAAGGACCC CATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCTACAATGAGAAGCGTGGAGAAGATCCTAAGCAGTTTAA AATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTATAGGAAGGATGGTCATCCTTCCATTTTTCGCAAATTT TGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTTACTCTGATTGCATACATTGGTGCTTGCCAGGGGTACC TGATGTGTGGAATGAGCTACTATTCCACTTATTATAG
Protein sequence (LotjaGi3g1v0198500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRWKWSRKKPPIFPLLVVFFMVFIAFSTFHSEHSIQQIHENPDHVHNHQEASYVKPNLSGQLKQAPEVLDRFSRCNSTV EYSGRKIAWSGDSQRSGHRRASSESCDVFSGKWVFDNASYPLYSESACPYMSDQLACHKHGRSDLGYQHWRWQPHNCNLK RWDVKEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQSVIPSDKRSMSPNAHLTIFRAEEYNASVEFLWAPLLVESNSDDP VNHRLGERIIRPDSVLKHASLWEHADILVFNTYLWWRQGPVKLLWTSEENGACEELNGQGAMELAMEAWADWISSKVDPL KKRVFFVTMSREWKPESEGNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPSIFRKF WEPLRPEQLSNPPSYSDCIHWCLPGVPDVWNELLFHLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 15 | 15 | - | – | |
Phobius | 1 | 32 | 32 | - | – | |
PANTHER | 4 | 437 | 434 | 4.6E-218 | – | |
PANTHER | 4 | 437 | 434 | 4.6E-218 | ||
TMHMM | 13 | 30 | 18 | - | – | |
Phobius | 16 | 27 | 12 | - | – | |
Phobius | 28 | 32 | 5 | - | – | |
Phobius | 33 | 438 | 406 | - | – | |
Pfam | 105 | 158 | 54 | 1.7E-22 | ||
Pfam | 161 | 436 | 276 | 6.6E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0198500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…