Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0203500 |
| Transcript ID | LotjaGi3g1v0203500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|K7LTP4|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29691881..29696436) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCATTCTTCTCACTGTCCATTTTTGTCGACGAGGTACGATATGCTTGTCCTCTTGTTACTAGAATCTAATATTTGAA ACTAGTTGTTTTGTTGAATGTCTTTTTTGATAGTATATACTTTGTATTGTATTTTGCTATAGGATTCCTAAACTTAGATT TTTAAAGCCTTGAATTTATAATAATTTAATTTCTATATATAAACAACATATGCATCTGAATAGGTTCATATAGGCGCAAA AGATATTGAGAGAAAGAGACATACACGATAGACATGAATCACCATACTAAAGTCGTAGTGGAGAAGAAAGCAAAACATAT ATATAGCGGGAAGAGAAGAGAGGGAGCCATACCTAAGTTTGGAGGATTGGGGGAGAGAATGAAAGTTTTTGGGTGTTTCA GTGAGAAATGAAAAAAAAGAGCTTTTAGGATTTTTGCAATAGGGACAACGAAACCTATGATAATCACTTTAACATTCTAA ATCTTATTTATCATATGTAGGCGCACTACTACAGAAATGGCTTTTCGCCACGCCCCAATTGCCACGGTTATAGGCGGAAC CGTGGCTAAAGGTCAGTTGCCACAGTTATACACGGAACCGTGGCAAAATGGGGAAATATTTTATTATTATTTTTAGGAAC CGTGGCAATAGGCTATGTTTTTTAGAAACCCCAGCAAATTAACAATCTGGCTCCAGTACTCCAAATTTTTTCCCTCCCCA CACGCACTCTCCACCCCAACAGAACCCTAACCCTCAGTTCCCTCTTCTCCTCAGTTAGAAACCCCAGCAAAGACTCACCT GAACACGATTTCCCTCTTCTCCTCCGCCTCGACTCAGTTCAAGAACACGTATGAGAACACGATTTCCCTCTCTTCCTCTC CCTCTCGTTCTCAATGATCTCCCTCTTGCTTCGTCGTTCACAGTAGCTGCTCGCTGTCAGATACCGTAGCTGTTCGATTT CACAGTAGCTGTTCGCTGTCGTTCACAGTAGTTGTTCGATTTCCGTCTTCTCCTCCGCCGTCTCCGTACTCTTTCACCGT TCTCACTGCAAGTACCATCCACAGGTACCGTTCTCACTCCGTACTCTTTGTTTTGGGTATGTGGTTGTAGGGTTTTAAAA TTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTTTTTTGTGCAGATGTGATTGATAGACTAAATGCATTGAGA GGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAGGTGAGCAAGTTTTTAACACTTTCTATGTCATTATGTCCT GTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAAATCAGAAAACTTGGTGCATGTTTGGATACACAGTAGATT TTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATCCTAGTTGCTTTTGTGGGAGTGCAATTAATTCTGGAAGGT TTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTTGCCCCTTGTTTTCCTTTTGAATAATAGTTTAGTAATTAC TGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAATTCAGAAGCTACAATAGTGGATTTGTGTGGCATGATCTTT CTGAAGATGATTTAATTTTACCAGCCCATGGAATTGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCA GGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGTCATTTGGTAGGTTCTGAATGATATAGAATGCATGTACCC TTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCCATTAGCAACGTCAAAATGCAGAACGTGAAGCTGCTGCCG GGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGCATGAATGGGAAAGAGACAAGAACCTCCCAAGA GGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCCGGAGTCTAGGGATGAAAAGAGCGACTCTCTGA GCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAGATGCTTCCACTCAGACAGAAGAACAAGTTAGC AGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGATAGATCATTAGAACCTGAATGCCATGAAATATG TCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGATACCATTTATCCTTCTCCTTCAACTTCAAGCC CCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAGCTGATGCTAGCAAACTGAGCAGCTTTAGGACC CAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAGGCCTCAAATTTGCTGATGCAACTGATCTCATG TGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTATAAGCATAGGTTTTCTGATTCAAAATTCCCTT CTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAGCAGAGAATCCAAAGCTGATGAATCTTAGGTTG GAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAATTGAAGGAAGGAGAGGCACATAAAGTTCTAAAACGTTC TTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATATTCTCTTGCAGCATTACAAATTCGCACGTGGAAGAGTTA TGCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAGTCATAATCAAATAGTTATTCAATGTTGAGGAAATAGTAT ATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATCTAGAATGTAGTAATTCTTTAAGTTTTGAATTGTGAATAA TGCCAGATTAGGAAGAAAACCAGTGATTTGTGCAAGTGGTCTATAGGTGATAATGCTAACTGCTTGAATCTGTTCATAGA AGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCAGCTTGAGTTATATTCTCCAACATTAAATGAATGATTTCA AAAGTAACATAACATCCACTAAACTGTAAATTGTTACAAATCAAAGTCCACACATTGACATTTTGCAAATGCTTTCACTA TTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAATAAATCACTTGAACATCTTCTGTCCCTCTGATCATGGTT AAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGTTAAAGCTAACAGAAATTCATGAAATATAAGTACTTTCAC ATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAATTGCTGTTTTGTGAACATAACATGCTGATTAAAAAAAAGA ATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCAACAAAAGGAAAAGGAAAGGACAAAAAGGGGTGGAGTGAT AATCTGAAAAATAATAAATAGAGGCACATATATCATATGTTATTATGAGCATCATTGCTGTTTTATTTCTTTCTTTTAAT ATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTGGGGTCAATGATTAATGTGGTTGGCTTTTTGGATTCAT GATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGAACATGATAGTTATTATTACATTACATCCTGGCCAATG TGTCATCTATAACATAACCAATGCACAAAAGTGCAGGACATATAAAGACCAGAAACCACAAGAAGACAAAGAGGAAACAT CCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAAGCGAATCCATGAAATCC CCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTAGGCATATCCTCAGTAACATCTAACGGTAGCAG CAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGAAGAAGAGGTGATCAAAA TAGAAGAAAGTTAAGTATTGACTCTATCTTTTCCCTTCTAAGATTCTTAATTTTACTTTTACCATCATTTTGCAGTACTT CTCTGATTGTCAATTTGGCTTCTACGATGAGTATCAACTAAATGAAATTAAAGAAGAGTGGGCTACTTATGTGTTAAAGA ATTTTGCCTAGTGTGGACTGCCAAGCTTTGGTGATTTCAAGTAGTGGCCGGGGGTTTGTCAAGCTGCTGTTTTTTCATCA ATAAAAGAGGCTGATGATGAGTCAACCTCATTGCTGTTTGTTGTTGTTCCAGCTGCATGTTTTGTCATTATTAATTCATG CTTTTAACTGATGTAGCTTATTTGGTTTAAGTTCTTGAGAGAGTGTGTTCTCAACAACAATTAGTATTTTTAGACAAATT TGTTAAGTGACATGGGTTTTAGTATTGTTTTGTTGTTGGCACATTTGAGTAATTATCTTCTAGAATATGTTAATGTTATT CTGAACATGAGATTTTATGTAATTTATTTCTTAAAAAATGTACTGCAATTTATGCATAGAACAGGTCAAATAAAAA
CDS sequence (LotjaGi3g1v0203500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTTGTATTCATGGTCTTGTAAGAGAAGCTACAATAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTT AATTTTACCAGCCCATGGAATTGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTC CCATTAGCAACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCC TCATCTAGCATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGA TGTTTCCCCGGAGTCTAGGGATGAAAAGAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATG GATTGGCAGATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCA ACAGAGGATAGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAAT GTGCAAGGATACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTT TGATTAGAGCTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACG AGGCTGAAGGCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTAT TCCTTCCTATAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTG ATTGCTTAGCAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACT AAATTGAAGGAAGGAGAGGCACATAAAGTTCTAAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAA ACCACAAGAAGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGC ATCCACGAAGCGAATCCATGAAATCCCCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTAGGCATA TCCTCAGTAACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTC GTTTAGGGAAGAAGAGGTGATCAAAATAGAAGAAAGTTAA
Protein sequence (LotjaGi3g1v0203500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLYSWSCKRSYNSGFVWHDLSEDDLILPAHGIEYVLKGSELFDESNSDNFSPISNVKMQNVKLLPGPASSRSHDEASS SSSMNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADASTQTEEQVSRTRAQKTCTRGVS TEDRSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADASKLSSFRTQEEEGARVPPTNT RLKASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENPKLMNLRLEDKEYFSGSLIET KLKEGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESMKSPISDGPRNSSDRFDGLGI SSVTSNGSSKRISEPSSGKKQSKRIDSFREEEVIKIEES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 386 | 386 | 1.3E-90 | ||
| PANTHER | 1 | 439 | 439 | 4.4E-132 | ||
| Pfam | 1 | 342 | 342 | 4.2E-100 | ||
| PANTHER | 1 | 439 | 439 | 4.4E-132 | – | |
| MobiDBLite | 66 | 119 | 54 | - | – | |
| MobiDBLite | 73 | 88 | 16 | - | – | |
| MobiDBLite | 89 | 119 | 31 | - | – | |
| MobiDBLite | 331 | 439 | 109 | - | – | |
| MobiDBLite | 331 | 359 | 29 | - | – | |
| MobiDBLite | 383 | 415 | 33 | - | – | |
| MobiDBLite | 416 | 439 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0203500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…