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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0203500 |
| Transcript ID | LotjaGi3g1v0203500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein upstream of flc; TAIR: AT2G28150.2 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|K7LTP4|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29691992..29695828) extracted from Lotus japonicus Gifu genome v1.2.
TGGGGAAATATTTTATTATTATTTTTAGGAACCGTGGCAATAGGCTATGTTTTTTAGAAACCCCAGCAAATTAACAATCT GGCTCCAGTACTCCAAATTTTTTCCCTCCCCACACGCACTCTCCACCCCAACAGAACCCTAACCCTCAGTTCCCTCTTCT CCTCAGTTAGAAACCCCAGCAAAGACTCACCTGAACACGATTTCCCTCTTCTCCTCCGCCTCGACTCAGTTCAAGAACAC GTATGAGAACACGATTTCCCTCTCTTCCTCTCCCTCTCGTTCTCAATGATCTCCCTCTTGCTTCGTCGTTCACAGTAGCT GCTCGCTGTCAGATACCGTAGCTGTTCGATTTCACAGTAGCTGTTCGCTGTCGTTCACAGTAGTTGTTCGATTTCCGTCT TCTCCTCCGCCGTCTCCGTACTCTTTCACCGTTCTCACTGCAAGTACCATCCACAGGTACCGTTCTCACTCCGTACTCTT TGTTTTGGGTATGTGGTTGTAGGGTTTTAAAATTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTTTTTTGTG CAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAGGTGAGCA AGTTTTTAACACTTTCTATGTCATTATGTCCTGTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAAATCAGAA AACTTGGTGCATGTTTGGATACACAGTAGATTTTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATCCTAGTTG CTTTTGTGGGAGTGCAATTAATTCTGGAAGGTTTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTTGCCCCTT GTTTTCCTTTTGAATAATAGTTTAGTAATTACTGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAATTCAGAAG CTACAATAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAATTGAGTATGTCCTCA AAGGCTCTGAGCTCTTTGATGAATCCAATTCAGGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGTCATTTGG TAGGTTCTGAATGATATAGAATGCATGTACCCTTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCCATTAGCA ACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGC ATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCC GGAGTCTAGGGATGAAAAGAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAG ATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGAT AGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGA TACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAG CTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAG GCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTA TAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAG CAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAATTGAAG GAAGGAGAGGCACATAAAGTTCTAAAACGTTCTTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATATTCTCTT GCAGCATTACAAATTCGCACGTGGAAGAGTTATGCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAGTCATAAT CAAATAGTTATTCAATGTTGAGGAAATAGTATATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATCTAGAATG TAGTAATTCTTTAAGTTTTGAATTGTGAATAATGCCAGATTAGGAAGAAAACCAGTGATTTGTGCAAGTGGTCTATAGGT GATAATGCTAACTGCTTGAATCTGTTCATAGAAGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCAGCTTGAG TTATATTCTCCAACATTAAATGAATGATTTCAAAAGTAACATAACATCCACTAAACTGTAAATTGTTACAAATCAAAGTC CACACATTGACATTTTGCAAATGCTTTCACTATTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAATAAATCA CTTGAACATCTTCTGTCCCTCTGATCATGGTTAAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGTTAAAGCT AACAGAAATTCATGAAATATAAGTACTTTCACATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAATTGCTGTT TTGTGAACATAACATGCTGATTAAAAAAAAGAATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCAACAAAAG GAAAAGGAAAGGACAAAAAGGGGTGGAGTGATAATCTGAAAAATAATAAATAGAGGCACATATATCATATGTTATTATGA GCATCATTGCTGTTTTATTTCTTTCTTTTAATATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTGGGGTC AATGATTAATGTGGTTGGCTTTTTGGATTCATGATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGAACATG ATAGTTATTATTACATTACATCCTGGCCAATGTGTCATCTATAACATAACCAATGCACAAAAGTGCAGGACATATAAAGA CCAGAAACCACAAGAAGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGA CCAAGCATCCACGAAGCGAATCCATGAAATCCCCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTA GGCATATCCTCAGTAACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGAT AGATTCGTTTAGGGAAGAAGAGGTGATCAAAATAGAAGAAAGTTAAGTATTGACTCTATCTTTTCCCTTCTAAGATTCTT AATTTTACTTTTACCATCATTTTGCAGTACTTCTCTGATTGTCAATTTGGCTTCTACGATGAGTATCAACTAAATGAAAT TAAAGAAGAGTGGGCTACTTATGTGTTAAAGAATTTTGCCTAGTGTGGACTGCCAAGCTTTGGTGATTTCAAGTAGTGGC CGGGGGTTTGTCAAGCTGCTGTTTTTTCATCAATAAAAGAGGCTGATGATGAGTCAACCTCATTGCTGTTTGTTGTTGTT CCAGCTGCATGTTTTGTCATTATTAATTCATGCTTTTAACTGATGTAGCTTATTTGGTTTAAGTTCTTGAGAGAGTGTGT TCTCAACAACAATTAGTATTTTTAGACAAATTTGTTAAGTGACATGGGTTTTAGTATTGTTTTGTTGTTGGCACATT
CDS sequence (LotjaGi3g1v0203500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTTGTATTCATGGTCTTGTAAGAGAAGCTACAATAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTT AATTTTACCAGCCCATGGAATTGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTC CCATTAGCAACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCC TCATCTAGCATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGA TGTTTCCCCGGAGTCTAGGGATGAAAAGAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATG GATTGGCAGATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCA ACAGAGGATAGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAAT GTGCAAGGATACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTT TGATTAGAGCTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACG AGGCTGAAGGCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTAT TCCTTCCTATAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTG ATTGCTTAGCAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACT AAATTGAAGGAAGGAGAGGCACATAAAGTTCTAAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAA ACCACAAGAAGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGC ATCCACGAAGCGAATCCATGAAATCCCCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTAGGCATA TCCTCAGTAACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTC GTTTAGGGAAGAAGAGTACTTCTCTGATTGTCAATTTGGCTTCTACGATGAGTATCAACTAAATGAAATTAAAGAAGAGT GGGCTACTTATGTGTTAAAGAATTTTGCCTAG
Protein sequence (LotjaGi3g1v0203500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLYSWSCKRSYNSGFVWHDLSEDDLILPAHGIEYVLKGSELFDESNSDNFSPISNVKMQNVKLLPGPASSRSHDEASS SSSMNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADASTQTEEQVSRTRAQKTCTRGVS TEDRSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADASKLSSFRTQEEEGARVPPTNT RLKASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENPKLMNLRLEDKEYFSGSLIET KLKEGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESMKSPISDGPRNSSDRFDGLGI SSVTSNGSSKRISEPSSGKKQSKRIDSFREEEYFSDCQFGFYDEYQLNEIKEEWATYVLKNFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 386 | 386 | 1.6E-90 | ||
| PANTHER | 1 | 432 | 432 | 4.8E-130 | ||
| Pfam | 1 | 342 | 342 | 5.0E-100 | ||
| PANTHER | 1 | 432 | 432 | 4.8E-130 | – | |
| MobiDBLite | 66 | 119 | 54 | - | – | |
| MobiDBLite | 73 | 88 | 16 | - | – | |
| MobiDBLite | 89 | 119 | 31 | - | – | |
| MobiDBLite | 331 | 359 | 29 | - | – | |
| MobiDBLite | 331 | 425 | 95 | - | – | |
| MobiDBLite | 383 | 415 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0203500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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