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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0230500 |
Transcript ID | LotjaGi3g1v0230500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Uracil phosphoribosyltransferase; TAIR: AT3G53900.2 uracil phosphoribosyltransferase; Swiss-Prot: sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase; TrEMBL-Plants: tr|I3S7F3|I3S7F3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0230500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36085990..36092725) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAATGAACTAATTTTTAGCTTTGAGTAAACTGGTTTAGACCCGTGTTCTACTTATCTATGATAGATCCATTTATCC ATTTAAGCCAAGGCCTCAAATCTTGCAGCATATCCTCTTCTTTTCTCTCCTCAAGGACCTTCCTTGAACTCTAAATTCCT GGGATTGCATTCATGGCTTGGTGCCGCATTCATTGCAACCTTAATCCCCTGTTCCCGTCCGATGCGGCGCCTTTTCCGTC CACATGTCACTCTCACTCTCACTCTCACTCTCACCTCTCACTCACTCCTCGAACTTTTCCTCCTATTAATTCTCTCTTCA CATCAAGAAAGGCAATTTAATATTTCCCATTAATTATTTTAATTACATCTATTTTGTTTTTTCCTTTTTGGTTTGTTATG ATTTGATTCTTGTTGTGTATATATACCCTTTTGTAACGCTTATTCATTTGTCTTTCCGCACTTAGATCACTTTTTCCAGT GCTCAGCGCCGCACTTTTGGGGCTGTGAGCTCACACATGACCATGGAGGAGAAGCCCATCTCTGCTGATCGAATGCTCGT TTGTTTTCTTATCTTCTTCTTGTTTTGCATTCTGGGTTTCATGGGGTTTTGCTCTATTTGATCCTGAGGGAAAAAAAGTT TTCTTTTTTGGTGATTAATCTGTGGTGGTTTAATTGGTTGATTAATCTGTTTATTGGGTTTTGGGGTTATGAGTTTTTGC TCTGTTTGATCCTGAGAAACAAAATGGAGGGAGATAAAAAATAATCTTTTTGGTGATTCATCTGTTGTGACTTAATTGGT TGAGTAATCTGTTTATTGGGTTTTTGGCTTCTGGGTTTATGGGTACATTTTTTGTTATCCTTTTTGTTTTGGTTTCTGGG TTTAGAGGCTTTTGGCCTGTGTGGTTCAATGGAACAGAAAATAGGAGAATGGAGCTAAAAGATTTTATTTTTAGGGTGAT TTATCTGTGATGGCTTGTTCGGTTGATAATGTTGTTTGTTGGGTTTTTGAAGGTGTATGTGCCTCCACATCCGTTGATCA AGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGTCCCATCTTCAGTGAGTGAATAAGTTTATTTTTACAGTCA ATGCTGAACATTGACTTTGTTCTACTGCAATCAACTTAGAAACAGCTTCATCACTTTAATTAACTTAAATAGCTACTTTC CTTTTTAATGGTTAATGGTATTGTTGCTTCTTGACAAGCACACCCAACTGGGAGGTTTGATTGAATTTGATAAGGTTTAA GTATTGTTGAACTGTTGATTGAGGGATGTTAGTCATGTTACTAAGTGTGGGAAGAGTGCATGCTTTATTACTACCAACAT TTAATCTTATTTGAATGGCTTAGTGGGGAGTCTGCTTGGTTGTTTTTCAAATTTCATTGTTCACACTCAAACTTATCTTC TACTCTGTTATTACTAGTAATTTTCATAAAAGAAAATCATGCCATTAAGTATGTTGATGGGAACTTTGAACTGGAACAAC TTAATTTGAGCATCTTGATTATTTTCAAGGGATAGACTTCTGACTTCTGAGCATGTAGTATCAATATGTCTTCATAGAGA ATCTGGTTTTCCTTTAACCTGAGATTCTTTTGTTTAAAAAACAAAACTAACTAAACTTTAGGTGGACTTGGCTTGAATTG TGGTATATGACGGTTGATTTGAAAGTTGACACGTGGTTTTTGATACTGTAGAAAATGCAATGGCTGAGCTGGGAAGGTTA CTTATGTATGAAGCTTCAAGGGATTGGTTGGTTAGTTCACGTCTCTTCGATAATTCTCATATGTTTCACCTTTTCTTTTT CCTGCAATATAATTTAACTTTGTTGCAATATTGTTTTTATTATCTAATTATAAAAGCTGACAAATTCAAGCCATGGGTTT TCATATGTACGAGGGCAAACCAAAAGGGAATAGGTTTTAACTTTATTTAGCATTCCAAAGAACTAATATAATTGATCCAA ATTTTATTTTTCTTTCCATGTCTATCTAAATGTGTCCTGAGGTATGTGGAGTATCAAGTTTGTTCCAGACTTCTAGTTGT CTTGCTCTAGTAGCACAATCAAATGACTTTTAGGTTAGGGTTATGAACTTATGATGTGTGTGTGTGTGATGGTAAAATGT TCATAAATGGGGGGGAGTAGAAGGCTCATAGGGGGGGGTATCTGAGGGCAAAGATGGCTCTGAACCCTGGGTCAAATTGA ATAGGTACCTAGCTAGGCTACGGTGGAAAATACCTGTGGAATCTTTGGTTGTTGCTTGTTAGGTGATAGGTCTATTGGTA AATTAACATAAGAACTGATTAGCATTTTAAGAAGGATAGAATTCTTGAAGTAGATTAAAAAACTAAGGAAAATAGTAGAG GTTCAGAAGATTACAGATTTAATCTTGGTTAGGCATGACGCATAATATATTTCATATAAAAGAGACCGAGTAAATAACAC CATCTTAATAAAGGAGAATCAAGTTTTTAAAATTCTGCCTTGTGGCTGGTCTTCCTTCTGATTTTAATACCTTTTTTTGA ACAAGAACAATAACGAATAAATGTTATATTTTGAAACAGCATGTACATTATTGCATTATACTATATAAGAATTACTTCAA AAGATAACAAACCTGGGCTTTAACTAAATCAGTATTTGACGATCTAGCTAAATGCAGAATTTAGTACACCCCCCTAATTT AGAATTCAAATCATAAATCTTTTTCTTCAACTCAGCTATCTGAGTTTCCCAGTTTACTCTCTCCTTGTTTTGTGTTTTGC CTGAGTTTCACACTTACGTCTCTAAAGAACGTATCTGGATTTTCATATTCCATGTGCAGAACAATACATTGCCAAACATT TAGATTTTCAATTTATTGCATATTCAATAAAATTTGAATCTTCATTTATCCTTTTTAAGGAAAATTTCATCAATACCTTG CTACAAAATCTTGAATTTTATAGTTATTTCTTTTTATAAATGTAGTTCTTAATAGCCAAAAGTTGTCGAAAACTGTCCAG GCAATGTTATTCTTAAAATTAAGCTTTTCTTAAATGCTCTTGTCTGTTGCACCACTCTCTATGAGACAAGAATCTAGAAC TTGGTACTGATTACAAGTTGTGGTGATGGCTTGAATTAATTGTTTAAATTTTTGATGTTGTTTGATATCTCCATCCGATA ATTTTGTCCTCCTATGGGCAGACTATTGTTCATTGATATACATTTTTATTCTTTTCTTCTTTGTTTTCATTGTTTTCAGC CCACTATATCTGGAGAGATTCAATCACCAATGGGTGTTGCCTCAGTGGAGTTCATTGATCCAAGGGAGCCTGTGGCTGTT AGTAACATACTGCTCTCACTATGTTTGGAATTAAATATATATATATGTATATATATATATATATATATATATATATATTC AGGAGTTCTTATGGCCTTTTAGTTACATACTTCCATTCTGCATATAATGATTGATATTTTCTTTACTACGCTCCCCAAAC TTGCTTTTAAATGGATCAAACATGAATTTGTTAAAAAAATATCATATTTGGTTGTAATATACTAAAATCAGTTCTGTTTC TAAAAGAACATGTAACTAGAAGTAAGGAAAAGTAGCTTGTGTTAGGTTGAATTTTTTCACTGTTTACTACAAACTTACTT TTAAAATAAAAACATTGAAACACAAATCACTTCACCTGAAACTCAATTCCAAACAAAATCAAATTTGCAAAATCAATGTC TCGTATAAAATCAATTCTGCAGATGCCCACTCAGACACTCAATTATACTAAATTGTGAAGCATTTCAAAGATATATTCAA TTCACGTAACCAAATCCATGTTCATATTTTTGGTGATCCTACAATGCTATTAATATTGTTCATTGCTTTCCAAAATAAAG TACTTTAGGGGTCTTATCAATTTGGTTGTGTAAGTGCCTTTGTACAAACAATGATTTTTTACCAGATTTTCAGGTAATTC CAATCTTGAGAGCCGGTCTTGCGCTTGCCGAACATGCATCATCGATCTTGCCCGCAACAAAAACCTATCATCTAGGTATT GATACTTGTGCTAGTTATCAATTTAAGAGGATGCAGTCATGCAAATGTTTGTTACTCATTGTTTGGTACTAGTTCATTTT AATAAGATGATGGCTTGTTTAACAATAGTTACTTCTATGAATGCACTTATGTAAACCTAGAATACATTTCTTGTTCGTTT CCTAAATTGATTTTTTTTTTGCTTCATTTGAGCAGGATTAAGCCGAGATGAGGAAACACTTCAGCCAACTATATATTTGA ACAAGTAAGAAATCTATATTTGAAAGAGAATGTTTTTTCTTAGCTGTTTTTCTTTTCTTGACGCTGGCATGGCTTGTTGA AGATGCAGCTGAGATCCATAAAGTCTCACCAATGCTTCTCTTACTTTTGGCTTGTTATACTGAATGCTAAAGACGCGGCT GAAATCATAAGATATTGCTTGTTACACACTCCTATTTTTGTTTTCCAGGTTACCTGACAAATTTGCAGAAGGATCTAAAG TATTTGTTGTTGATCCTATGCTAGCAACAGGTACGTGCAGTTAGATGTGTGGGAGTTGAAAGTTAGGGGTGTTTTACATA TTGAATTGAGTTGTCTCACAGTCAAATTCTTTGTGTTTGTATAATGATTACTTTAAGTTAAACGCTAACAGAGGCCAGAA CCTCCTTTCACGTTTTTTGCACAAAAGAGATCACCCTAGCATGCACAAAAATATTTTTTTGCAAGGTTGCACAAGGGCCA TTTGACCTCCTCCCACATATTATCTGGTTTTTATGGAATTTTGAATTAAAAAATTAATGTGTTTCAACTTTTGGCCCAAA TTTATTCTAAATTATGTTAGGACCCCACCTCTACCCCACCACTTCGCCACCCCTCTCCATCACCCTCCCTCCCGTCAACC TCCTCCCTCTGCCATAACCACGTCCACCTCCTCTCCACCCCTCCGCGTTAACCATGGCCACCCCCTTTGATGTTCTTTGT CCCACAACTGATAGCCCAACAATTCTTTTGAAAAAACTCAGTTGGAAAAACTCATCTTTCGGCAATAAGGTCCTCAGAGA ATGGCAGAGGCCGAGGAGGTTCAGTGGAGGGAGGGTGGTGGAGAGGAGGTGGAGGAAGGGAGTTATGAGAACACTTTAAG TGGCAGATGGAAAGACTCTCCCATAAAGTGTTCTCATAACTAGCATGAGCGTTATCATTACTTTAAGTGTTCTCATAACT CATGTTATTATTTATGATTGAGATTTTGTTTTCCTTATGAATTGCAGGTGGTACTATTGTGGCAGCCCTGAATCTCTTAA AGGATCGTGGGGTTGGCAACAAACAAATTAGAGTGGTAGGGAATAGTTTTTATATTCAGAAGCTAGAATGCTTAATAATC ACAATTCTCATAATATTATTAATTCAATGTACTTTGTTTTTGTGTGCTTAATTGGTTTAGTTTAGCAATGAGTAAAAAAC CCCAGATTCTTCTTTATGCATTATGCCATGCATGATATGTTTTGTAAAATTTGCTACATTTTTGTGATTGAAATTGTCAA TACTCATGCATACATGTGCAATCTAATTCTCTTATCAATTGTCTAGTAACATGATTCATGGCAATGCAGATATCTGCTGT AGCTGCCCCTCCGGCGCTTCAAAAGCTGAGCGAACAGTTCCCTGGGTAGTCTCAAAAACTTCAAATCTATTCACTTACTT TGAAGCAATGGGTTCTAATCATAACATTTTACAGGCTTCATGTGTATACTGGAATAATTGACCCTACCGTTAATGACAAA GGGTATGTTCCTCCCAACATTATAATTCAATTTAATTGTTTATTGGTAGTTAGGTAATGCAGAGAATCACGTCATTGTTG AATTTACATCTCTTGTGTAGGTTTATAATTCCTGGTCTTGGAGATGCTGGGGACCGCAGCTACGGTACATGATGATACAT GAATATTCATTTGCTTAATCTTTTTATCAAGTGGCCCGCGTTAGGGATTTTGGTTATTGTTAATTGAAATGCATGTGTTG AAACTCCTAATGCGAGAATTGGCAAGTATCTAAAGTTTGTACTAGAATCTAGTATTCCAATCATTTGATTATTAGATTTT TTTTTGGGTCTGTTGATCATTAGAATTCTTATTCTTTTATTGAGGGATCTTCATCCTCAAAGATTCATAGAATTTGATTC ATGCAAGAAATGAGGGATTATTTTTTACACATTCCTATTGTTCACACATTCTTAGGTTATATTTTTATGGCTTAATTGCA ACTTTGGTCCCTGACATTTATAAAAGCCACGATTTTGGTCCCTCACCTAATTTAATTACAAAAATCGTCCCTCACCTAAC ACTCTGTGAACAAAGTTGGTCCGACCGTCAATTTTTTAACGGAAGAAGCTTATGCGGTGTTTGAAAACTTAGGTGGAAGT GCCACTGGAGAGAGGGAGGCACATGCCTCTACATCTCAGAGGAAAAAACAAAAAAACTCAGAGGAATAGCACACAACCTC AATCCCAGCGTTCCAACAACTAGGCCTCCCAACAGCAAAGCTTCACTATGAGATAAAAAAAACAGCCGAGAGGAGAGGAA AAATTGATTCTGACGCCAGTGGCACTTCCACATAAGCTTTCAGACGCCACGTAAGCTTCTTCCGTTAAAAAATTGACGGT TGGACCAACGTTGTTC
CDS sequence (LotjaGi3g1v0230500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGGTGCCGCATTCATTGCAACCTTAATCCCCTGTTCCCGTCCGATGCGGCGCCTTTTCCGTCCACATGTCACTC TCACTCTCACTCTCACTCTCACCTCTCACTCACTCCTCGAACTTTTCCTCCTATTAATTCTCTCTTCACATCAAGAAAGA TCACTTTTTCCAGTGCTCAGCGCCGCACTTTTGGGGCTGTGAGCTCACACATGACCATGGAGGAGAAGCCCATCTCTGCT GATCGAATGCTCGTGTATGTGCCTCCACATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTG TCCCATCTTCAAAAATGCAATGGCTGAGCTGGGAAGGTTACTTATGTATGAAGCTTCAAGGGATTGGTTGCCCACTATAT CTGGAGAGATTCAATCACCAATGGGTGTTGCCTCAGTGGAGTTCATTGATCCAAGGGAGCCTGTGGCTGTAATTCCAATC TTGAGAGCCGGTCTTGCGCTTGCCGAACATGCATCATCGATCTTGCCCGCAACAAAAACCTATCATCTAGGATTAAGCCG AGATGAGGAAACACTTCAGCCAACTATATATTTGAACAAGTTACCTGACAAATTTGCAGAAGGATCTAAAGTATTTGTTG TTGATCCTATGCTAGCAACAGGTGGTACTATTGTGGCAGCCCTGAATCTCTTAAAGGATCGTGGGGTTGGCAACAAACAA ATTAGAGTGATATCTGCTGTAGCTGCCCCTCCGGCGCTTCAAAAGCTGAGCGAACAGTTCCCTGGGCTTCATGTGTATAC TGGAATAATTGACCCTACCGTTAATGACAAAGGGTTTATAATTCCTGGTCTTGGAGATGCTGGGGACCGCAGCTACGGTA CATGA
Protein sequence (LotjaGi3g1v0230500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAWCRIHCNLNPLFPSDAAPFPSTCHSHSHSHSHLSLTPRTFPPINSLFTSRKITFSSAQRRTFGAVSSHMTMEEKPISA DRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLMYEASRDWLPTISGEIQSPMGVASVEFIDPREPVAVIPI LRAGLALAEHASSILPATKTYHLGLSRDEETLQPTIYLNKLPDKFAEGSKVFVVDPMLATGGTIVAALNLLKDRGVGNKQ IRVISAVAAPPALQKLSEQFPGLHVYTGIIDPTVNDKGFIIPGLGDAGDRSYGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
PANTHER | 57 | 293 | 237 | 6.1E-114 | – | |
PANTHER | 57 | 293 | 237 | 6.1E-114 | – | |
Gene3D | 77 | 294 | 218 | 2.4E-70 | ||
TIGRFAM | 85 | 294 | 210 | 3.2E-68 | ||
SUPERFAMILY | 85 | 293 | 209 | 4.85E-61 | ||
Pfam | 87 | 294 | 208 | 5.2E-67 | – | |
CDD | 150 | 270 | 121 | 3.10731E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Uracil phosphoribosyltransferase activity | Catalysis of the reaction: diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil. | ||
Biological process | Uracil salvage | Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis. | ||
Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). |
Expression pattern of LotjaGi3g1v0230500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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