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LotjaGi3g1v0237400.3

Overview

Field Value
Gene ID LotjaGi3g1v0237400
Transcript ID LotjaGi3g1v0237400.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description TBC1 domain family member; TAIR: AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|G7IJN4|G7IJN4_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi3g1v0237400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:38079741..38084824) extracted from Lotus japonicus Gifu genome v1.2.

ATGATTAATTTTCCTTGTGGGGTTTCTATCTTATGAGACAAACATAAATCAATTAGATGATCCGACTCCTCAATACAAAA ATCTTGTGCCTTCTTCATCTTGAAAATTTTACATTTATTTGGATTTCCGATTTTGTAATACGTATATACTGTATTTTTAT TTTTAACTTCTTTTATTATGTGGTCCAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTACAGAAG GGTATCTGGATATAGGCAAGACTCTGCGCCGAATCTACAGAGGGGTAATTGCTTTTTTATCATAATAATGCTGGTTCAAT TCACTTGAACATGTCCATGCATGACTACATGCTCATTTAAAAATGACAGATGGTAGTCATGGAAAGTTCTCCTAGTGATC ATTTTCTTCATAAGTAATATTTTTTCTTCATGATGATGAGTAATGGATGTGCCGTGCTGATTATTGTTTTATGATGCCTC TAAATTTTATTCAAGATTATGGTTTTCTTGTGTGGGCAAGTGTAGAAAGACAAGTATTTGTTTGTAAATGTGATTGTGAG TTGATGGATACTTTATTGAAGCTTTTGAATAGGGAGTTCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGT TGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGAAGGTAATCAATCTTCCCATTTTATAG ATTTTTATTTTGTTCGATAACTATTCTGTTTTTACTCCCTTGTTACCCTCACAGGTCAGAGCATTGTAGAGCATTTAAAA TTTTTATGACGTTGAATTTTGTCGCTGCCTTAGTTTTCCTATTAAATAAAAATGCCACGTCCTTAAAAAATAAAGGAGGA ATTGCTTCCACATCCTTTATATAAGGATAAAACAAGGGAAATTACATAGTACTTCTGTAATTTTATAACTGCTGTTTCTG AACTCTAAATCTAATATATCATTACTTGAATATCACTTATGTTTTTGTCATCAGGATGCAATATGCTACGTGGAAGGAAG AATGCCGCCAACTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACAGCACCTGTTATTAGTGAAGATGGTCAGCCAATT CAAGAGCCATTGGTTCTATCAGAAACAAATTCAGCCGAGGGATTGGCTGTTCTTCCTCAAGATAATAATTGGCCTTCAAG TTTAAATGCTGCAAGTAATGTAGAAACAGTGGCGGACAAGAGAGTAGTCCAGTGGTTGTTAACTCTCCATCAAATAGGTT CGTGAATTTCTTTTCGTGCAGTGTCTATTATATATCGGCTATGGTATGTTAGTTATTTCATAGGCATATAAGTATTAGGT GAAATCCTGCTCCAGAATTATTTTGTTCATAAATCTGTTATGCCTGAATGTTTAGTTGTACAAATGCAATTTGATTTATA TGGCATGACATAGTTGGCTTTGACTTTGATTTCCTTAAATGGGTAGTAATTTATTGTTATCTTTTGAAGTATTATCATGT AGTAAAATAAAATCCCATCATAATAGATGTCATAGTATAATCCACATGGTGTGTGAATGACCGTTTTCTTGGACATAACA AATTTCAGGTCTTGATGTGGTTCGCACTGATAGGACGTTGGTTTTTTATGAGAAGCAAGAAAACTTGGCGAAACTATGGG ATGTTCTTGCACTTTATGCTTGGATAGATAAAGATGTCGGCTACGGTCAAGGTGGGTTTTTAATGTATATTACATGTTTG GTCTCTTTGGATAATTGGATATAGACCGGTACTATATTTTTTTGAATTCTGAGATCTTAACTTCATACATTTGGTAATTC CATGTATGTATTTGCGCTATTCTGTAATATATTTGGCTAGTTGTTGACCCTAATGTTAACCTAACAACCCTGGCATTAAA AGGAAAGCCAATATTCATAGAATATTTAATGTATGGTACCTTGTTATGTTCAAGTATTTTTGGGGTTTGAAACCACATAA CAGCACCTTCATATTTATTTAATCACTCTTTTTAAGTGTTCGGTCAAATTAAGACCTCTAAATTAATTTTCATTGAAGAA AAATGAACTGTGTAGAGAAATCTGAACCTTGAGAGAAGAAAACACCAATTAGGTTAATGGATTTATCTATAAAAGAAGAA TATATATGATAGGATTTACTCGTTTATGTACTAGTTGTCCAGTTCTACTTTTTTTCCGTGCAATCTTGCATGAAATAATT GCAACCACCATTTGCAATTAATTTAAGCTTCATGTTTTAACATCTTACAATTCTGAACAGGAATGAGTGACCTATGCTCC CCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCGCAGACTTGTAAACATCTC ATCTCTATGCTCTATTGGATTATTAAATTCTTTATAGCACATTTTTTCATGAAAATATTTCTTTTAAGAATTAGTAAAAA AATCTAATGTTTGGTTATTCGAGTTTCCTCTTTCTTTTTTACAGGGTTTTTTGTTTATATTCCTAGTTTGCTTCTCCCTG ATTTTACTCTCAATTAACTCTCGTTTAAGTTGCACAATGCATATGGGTTTGTTAAGATGTCCATTCATTATGATATTGAA ACTAATTACAATTTCCTTTATTTATTGTTAGAAATATAATATAAAACCATTCGGAGTCCCTTACCCAAGAGCTTTAGCTT TTGGGACAATTGGTTCATGGCATGGTATCAAAGCCTCTATGACCAATTGGTCTAGAATTTGATCCTTGTTGCCCCCATTA TTCTAATAAAAAAGGTTGAATATCAGCACATGGTTTGTGGGCTTGTGCATTGTCCGCACTTCAAGCTCAAGTTGGCTCTT GCGTGAGGGGTGTGCTAGAAATATAATATAAAACCATTCAGGGTCCTTTACCCAATATAACAAAATTATGCTGATTGGAA AGATGGACTTCTGTGTAGAAAATTACGAGTGAGCTTATAATGTATTTGTATAGCTAGAGAAATGATAAAACATATCTTGA GCCTTCATCTAACAACTTATTTAGGAGAATTGGTTATTGACATGATGGTATTAGAGGGGAAGAACGTCCATGACTTAGTG TTGAACAGTTCATCTTTGTCCCCTATTATTCCAAATAAGCATTGAGGTGTGTTATGGGTGTAATAAAGCCATTCTTGCGC CTTCACATAGAAGCATAAGTATTTAGGAGGGTTAAGATAAGTTTGGTTATCCATTTGCACTTACGCAAACAGACTTCACA TGCACTTCAAGAAAAAAAAGTGAACTGAACTCTCGCGAAATGAGTTGAAAGTCCGTTCACATTGTACTCATATGGGATCC AAAGACACACTTTGTCATTGATGGTAGTTGTTTGAAATTTTATTCAACAAGTTGGCGCACAAGCATTCTTGGTGAACAGT GAACTCTACACTTAACTGCTATAATTTTTTTTCATATATATTACAAATTTTATTAATAGTATTTCAGACTTTCAGCTTTA TCTCAATTTCTCACTATCTATATTCTTGACTTTTCAAAGCGAGGAAATTTCAGATGCACTAATAACTCTGTTGGGGTGGA GGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGGTATTTTCTTACATA CTTTCGCTGTATTTTATTTGTCAAATATGGAATAAAATTTTCTGATTTTAATTGTATGGTTTGGTTGTGATTGTTGTTTT AAGAAATGATGATTGTGAGAAATTATTAATGGAAACTGGTTTGTTCACTGTTATCTTGTGATTTGAAGTTGTTAAATAAA CCCCCTCTCTTTTCTTTATTAACATTTCATATAATGTTTGAGAGATGATAAATAACAATGTGCTGTCTTCTCATTTTGGA GCATAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGGGAATTCTCCTTT TGTGATTCATTGTTCCTTTGGGAGGTGTGTTTGGATTCTCTATTTGTGATATATTCTATTACATTTATTGAACAAAGGAA CATTAATTTACTCTCTGAGTATAGTAGTTGTTCTCTCAGTATGGATATGATTTTCAATTCTGTTTTGCTATTAATCATTA TTCTTTCAGATTGTTAACATTACTTTATATTAAAAGTTATTGGGTCAAATTATTGATAATATATTTATAGTATCTTCTGT TTGCTAGATGAGTTTGCATTGTTCCCTTTGTGTTAATATAATATATGTACGGTGTGTGTGTGTGTAATATTTTTCCTCAT GGAAACAGTTTATGGAATCATATTTCCTTTCTTTTTCTATTTGCAAGGGAGTATCTTGGGAATCTTTGTAAAATGATGAT TGATAACTAATAGCTTGAAATGTTTACCAGATGATGTGGGCTCTAGAATATGATCCTGACTTGTTCTTGATGTATGAAGA GCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATCAATGCGGAAAGTATGAAAGAG CGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGTTGAAAGAT AAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGGTTAGTCTTGTGACATTCAAGTTTAAGTT CAAGAAAAGGAAAAATTGCTTTGATACAAAAGGAATGAAATTATTTTTCCGTACTTAGTGAACAAGCTGTGACAAGGTTG CATTTGTTTCATAATGAAAGTTGTGTCTTAAGACATTATATTCCTTAACAAGTTTTGCTTTGCTTTTTGTATCTGTTTAA TTCCTTCTTTGCACCTTGGATATGAATTTTCTCAGATATTGAATGACACAACTGGAAATCTAGATGCCAAAAAGGCTTGC TCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAAAGGTAGTGTTTCTCTACTATGCCATTTACCCTCTTTTCATATC CTCATATTTCCATATAATGGGAGGAAAAGCAAACAAAATCATAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0237400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATATGCTACGTGGAAGGAAGAATGCCGCCAACTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACAGCACCTGT TATTAGTGAAGATGGTCAGCCAATTCAAGAGCCATTGGTTCTATCAGAAACAAATTCAGCCGAGGGATTGGCTGTTCTTC CTCAAGATAATAATTGGCCTTCAAGTTTAAATGCTGCAAGTAATGTAGAAACAGTGGCGGACAAGAGAGTAGTCCAGTGG TTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACGTTGGTTTTTTATGAGAAGCAAGAAAACTT GGCGAAACTATGGGATGTTCTTGCACTTTATGCTTGGATAGATAAAGATGTCGGCTACGGTCAAGGAATGAGTGACCTAT GCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCGCAGACTTCGAGGA AATTTCAGATGCACTAATAACTCTGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCC AAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTC GGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACTTGTTCTTGATG TATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATCAATGCGGAAAGTA TGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGT TGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACTGGA AATCTAGATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAAAGCAAACAAAATCATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0237400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQYATWKEECRQLFPLVGSGRFITAPVISEDGQPIQEPLVLSETNSAEGLAVLPQDNNWPSSLNAASNVETVADKRVVQW LLTLHQIGLDVVRTDRTLVFYEKQENLAKLWDVLALYAWIDKDVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRG NFRCTNNSVGVEAQLSNLASITQVIDPKLHKHLEHLGGGGYLFAFRMLMVLFRREFSFCDSLFLWEMMWALEYDPDLFLM YEEPQSATKKTEGPKGKAKSIHQCGKYERANMRNGTKNSEAPLPISIFLAASVLKDKSAELLHEARGLDDVVKILNDTTG NLDAKKACSGAMKLHKKYLRKQTKS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957:SF515
1 343 343 3.5E-145 –
PANTHER
PTHR22957
1 343 343 3.5E-145 –
SMART
SM00164
29 255 227 3.5E-24
IPR000195
Gene3D
G3DSA:1.10.8.270
53 156 104 3.2E-15 –
ProSiteProfiles
PS50086
70 232 163 31.076
IPR000195
SUPERFAMILY
SSF47923
72 192 121 2.88E-36
IPR035969
Pfam
PF00566
80 229 150 6.2E-34
IPR000195
SUPERFAMILY
SSF47923
170 338 169 1.67E-29
IPR035969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0237400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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