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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0237400 |
| Transcript ID | LotjaGi3g1v0237400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|A0A0R0H896|A0A0R0H896_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0237400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38079741..38085747) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGAGAGATCCAGGAGTTCCTGCTGATTCTTTCTATGAAATTCGCCCTGAGTGCACTGATGTTCCCATTTCTCGATT TAAGATCAAGGTCTGTTTTCTTTCCCCCCAGTATTTTTTTTCCACTATGGAGTGTCCTAATCTGAGAATCTTTGTTCATA GATGAACATAATGAGCATTGGTAGAAATTGGTATTGGTCAATGCATAATAATATGAGGTTCTGTTTGGTCATTTGAGGAT GTTAGTGTATTTTTTTTTTTCCTTTTTAATCTGGCTTGTCTGTCTTTCTAAGGTAAATTGTATTGAGCTTAACAAGTGGA AGGGACTTTTGTTCATTTGGGGATAGGTTGATTTTGGATAATTGAAAATCATTTATGAGTGATCTGAAATGTGTTGTTGA CCTTTACAGAGTTGACAATGATGTGTTTTAGTGATGCTCCTTTATTGAAGGAATAAAGTATTTTGAGCTTTTAGGATCTT CTATTTCTTGCTTCTTGTGAATTTCAAATCCAGTAATGTCATATCATGTATCACTTTTAATCAATAAAGTTTGATTCACT GAGAGGAGTTTATTGTACAGAAATTACTGTATCATGAATGCCAAATTGAATGTAGTTTCGTTTCTAAATTATATGATTGT CCACATTATTTTGGATCAAATCCTGATTCTTATGGTAGATGCATGAAATAGGGGCACTTAGGTTTTAATTTATCTCGTGG AACTTGATTAAGTAAAACACTTGTTGTATTAATTATTAAGATTTGTTTGTATTTCACTATGTCTTGACTATACAATGGCA TATAGGCTGTTATGAATTGGTTGATTGCTTCATTTTGGAAAAGTTTAAAACTTTTAAGAGAACTAAATCTGAATATGGAT AAAATACACTTGGTAATTAGCCAAGGATCATGACAAATACTAAATGATTAATTTTCCTTGTGGGGTTTCTATCTTATGAG ACAAACATAAATCAATTAGATGATCCGACTCCTCAATACAAAAATCTTGTGCCTTCTTCATCTTGAAAATTTTACATTTA TTTGGATTTCCGATTTTGTAATACGTATATACTGTATTTTTATTTTTAACTTCTTTTATTATGTGGTCCAGGCTGGTAAA ACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTACAGAAGGGTATCTGGATATAGGCAAGACTCTGCGCCGAATCTA CAGAGGGGTAATTGCTTTTTTATCATAATAATGCTGGTTCAATTCACTTGAACATGTCCATGCATGACTACATGCTCATT TAAAAATGACAGATGGTAGTCATGGAAAGTTCTCCTAGTGATCATTTTCTTCATAAGTAATATTTTTTCTTCATGATGAT GAGTAATGGATGTGCCGTGCTGATTATTGTTTTATGATGCCTCTAAATTTTATTCAAGATTATGGTTTTCTTGTGTGGGC AAGTGTAGAAAGACAAGTATTTGTTTGTAAATGTGATTGTGAGTTGATGGATACTTTATTGAAGCTTTTGAATAGGGAGT TCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATC AGATAAGACAACGCCGAAGGTAATCAATCTTCCCATTTTATAGATTTTTATTTTGTTCGATAACTATTCTGTTTTTACTC CCTTGTTACCCTCACAGGTCAGAGCATTGTAGAGCATTTAAAATTTTTATGACGTTGAATTTTGTCGCTGCCTTAGTTTT CCTATTAAATAAAAATGCCACGTCCTTAAAAAATAAAGGAGGAATTGCTTCCACATCCTTTATATAAGGATAAAACAAGG GAAATTACATAGTACTTCTGTAATTTTATAACTGCTGTTTCTGAACTCTAAATCTAATATATCATTACTTGAATATCACT TATGTTTTTGTCATCAGGATGCAATATGCTACGTGGAAGGAAGAATGCCGCCAACTGTTTCCTCTTGTTGGAAGTGGTAG ATTTATCACAGCACCTGTTATTAGTGAAGATGGTCAGCCAATTCAAGAGCCATTGGTTCTATCAGAAACAAATTCAGCCG AGGGATTGGCTGTTCTTCCTCAAGATAATAATTGGCCTTCAAGTTTAAATGCTGCAAGTAATGTAGAAACAGTGGCGGAC AAGAGAGTAGTCCAGTGGTTGTTAACTCTCCATCAAATAGGTTCGTGAATTTCTTTTCGTGCAGTGTCTATTATATATCG GCTATGGTATGTTAGTTATTTCATAGGCATATAAGTATTAGGTGAAATCCTGCTCCAGAATTATTTTGTTCATAAATCTG TTATGCCTGAATGTTTAGTTGTACAAATGCAATTTGATTTATATGGCATGACATAGTTGGCTTTGACTTTGATTTCCTTA AATGGGTAGTAATTTATTGTTATCTTTTGAAGTATTATCATGTAGTAAAATAAAATCCCATCATAATAGATGTCATAGTA TAATCCACATGGTGTGTGAATGACCGTTTTCTTGGACATAACAAATTTCAGGTCTTGATGTGGTTCGCACTGATAGGACG TTGGTTTTTTATGAGAAGCAAGAAAACTTGGCGAAACTATGGGATGTTCTTGCACTTTATGCTTGGATAGATAAAGATGT CGGCTACGGTCAAGGTGGGTTTTTAATGTATATTACATGTTTGGTCTCTTTGGATAATTGGATATAGACCGGTACTATAT TTTTTTGAATTCTGAGATCTTAACTTCATACATTTGGTAATTCCATGTATGTATTTGCGCTATTCTGTAATATATTTGGC TAGTTGTTGACCCTAATGTTAACCTAACAACCCTGGCATTAAAAGGAAAGCCAATATTCATAGAATATTTAATGTATGGT ACCTTGTTATGTTCAAGTATTTTTGGGGTTTGAAACCACATAACAGCACCTTCATATTTATTTAATCACTCTTTTTAAGT GTTCGGTCAAATTAAGACCTCTAAATTAATTTTCATTGAAGAAAAATGAACTGTGTAGAGAAATCTGAACCTTGAGAGAA GAAAACACCAATTAGGTTAATGGATTTATCTATAAAAGAAGAATATATATGATAGGATTTACTCGTTTATGTACTAGTTG TCCAGTTCTACTTTTTTTCCGTGCAATCTTGCATGAAATAATTGCAACCACCATTTGCAATTAATTTAAGCTTCATGTTT TAACATCTTACAATTCTGAACAGGAATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCAT TTTGGTGCTTTGAGCGTCTAATGCGCAGACTTGTAAACATCTCATCTCTATGCTCTATTGGATTATTAAATTCTTTATAG CACATTTTTTCATGAAAATATTTCTTTTAAGAATTAGTAAAAAAATCTAATGTTTGGTTATTCGAGTTTCCTCTTTCTTT TTTACAGGGTTTTTTGTTTATATTCCTAGTTTGCTTCTCCCTGATTTTACTCTCAATTAACTCTCGTTTAAGTTGCACAA TGCATATGGGTTTGTTAAGATGTCCATTCATTATGATATTGAAACTAATTACAATTTCCTTTATTTATTGTTAGAAATAT AATATAAAACCATTCGGAGTCCCTTACCCAAGAGCTTTAGCTTTTGGGACAATTGGTTCATGGCATGGTATCAAAGCCTC TATGACCAATTGGTCTAGAATTTGATCCTTGTTGCCCCCATTATTCTAATAAAAAAGGTTGAATATCAGCACATGGTTTG TGGGCTTGTGCATTGTCCGCACTTCAAGCTCAAGTTGGCTCTTGCGTGAGGGGTGTGCTAGAAATATAATATAAAACCAT TCAGGGTCCTTTACCCAATATAACAAAATTATGCTGATTGGAAAGATGGACTTCTGTGTAGAAAATTACGAGTGAGCTTA TAATGTATTTGTATAGCTAGAGAAATGATAAAACATATCTTGAGCCTTCATCTAACAACTTATTTAGGAGAATTGGTTAT TGACATGATGGTATTAGAGGGGAAGAACGTCCATGACTTAGTGTTGAACAGTTCATCTTTGTCCCCTATTATTCCAAATA AGCATTGAGGTGTGTTATGGGTGTAATAAAGCCATTCTTGCGCCTTCACATAGAAGCATAAGTATTTAGGAGGGTTAAGA TAAGTTTGGTTATCCATTTGCACTTACGCAAACAGACTTCACATGCACTTCAAGAAAAAAAAGTGAACTGAACTCTCGCG AAATGAGTTGAAAGTCCGTTCACATTGTACTCATATGGGATCCAAAGACACACTTTGTCATTGATGGTAGTTGTTTGAAA TTTTATTCAACAAGTTGGCGCACAAGCATTCTTGGTGAACAGTGAACTCTACACTTAACTGCTATAATTTTTTTTCATAT ATATTACAAATTTTATTAATAGTATTTCAGACTTTCAGCTTTATCTCAATTTCTCACTATCTATATTCTTGACTTTTCAA AGCGAGGAAATTTCAGATGCACTAATAACTCTGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTA ATTGATCCAAAACTTCACAAACATTTAGGTATTTTCTTACATACTTTCGCTGTATTTTATTTGTCAAATATGGAATAAAA TTTTCTGATTTTAATTGTATGGTTTGGTTGTGATTGTTGTTTTAAGAAATGATGATTGTGAGAAATTATTAATGGAAACT GGTTTGTTCACTGTTATCTTGTGATTTGAAGTTGTTAAATAAACCCCCTCTCTTTTCTTTATTAACATTTCATATAATGT TTGAGAGATGATAAATAACAATGTGCTGTCTTCTCATTTTGGAGCATAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGC TTTTCGGATGCTAATGGTTCTGTTTCGTCGGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGGTGTGTTTGGATT CTCTATTTGTGATATATTCTATTACATTTATTGAACAAAGGAACATTAATTTACTCTCTGAGTATAGTAGTTGTTCTCTC AGTATGGATATGATTTTCAATTCTGTTTTGCTATTAATCATTATTCTTTCAGATTGTTAACATTACTTTATATTAAAAGT TATTGGGTCAAATTATTGATAATATATTTATAGTATCTTCTGTTTGCTAGATGAGTTTGCATTGTTCCCTTTGTGTTAAT ATAATATATGTACGGTGTGTGTGTGTGTAATATTTTTCCTCATGGAAACAGTTTATGGAATCATATTTCCTTTCTTTTTC TATTTGCAAGGGAGTATCTTGGGAATCTTTGTAAAATGATGATTGATAACTAATAGCTTGAAATGTTTACCAGATGATGT GGGCTCTAGAATATGATCCTGACTTGTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAA GGAAAAGCAAAGTCAATACATCAATGCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCC TCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGG ATGATGTTGTCAAGGTTAGTCTTGTGACATTCAAGTTTAAGTTCAAGAAAAGGAAAAATTGCTTTGATACAAAAGGAATG AAATTATTTTTCCGTACTTAGTGAACAAGCTGTGACAAGGTTGCATTTGTTTCATAATGAAAGTTGTGTCTTAAGACATT ATATTCCTTAACAAGTTTTGCTTTGCTTTTTGTATCTGTTTAATTCCTTCTTTGCACCTTGGATATGAATTTTCTCAGAT ATTGAATGACACAACTGGAAATCTAGATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAA AGGTAGTGTTTCTCTACTATGCCATTTACCCTCTTTTCATATCCTCATATTTCCATATAATGGGAGGAAAAGCAAACAAA ATCATAG
CDS sequence (LotjaGi3g1v0237400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGAGATCCAGGAGTTCCTGCTGATTCTTTCTATGAAATTCGCCCTGAGTGCACTGATGTTCCCATTTCTCGATT TAAGATCAAGGGAGTTCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACAT TTGAGGAAAGAGATCAGATAAGACAACGCCGAAGGATGCAATATGCTACGTGGAAGGAAGAATGCCGCCAACTGTTTCCT CTTGTTGGAAGTGGTAGATTTATCACAGCACCTGTTATTAGTGAAGATGGTCAGCCAATTCAAGAGCCATTGGTTCTATC AGAAACAAATTCAGCCGAGGGATTGGCTGTTCTTCCTCAAGATAATAATTGGCCTTCAAGTTTAAATGCTGCAAGTAATG TAGAAACAGTGGCGGACAAGAGAGTAGTCCAGTGGTTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGAT AGGACGTTGGTTTTTTATGAGAAGCAAGAAAACTTGGCGAAACTATGGGATGTTCTTGCACTTTATGCTTGGATAGATAA AGATGTCGGCTACGGTCAAGGAATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTT GGTGCTTTGAGCGTCTAATGCGCAGACTTCGAGGAAATTTCAGATGCACTAATAACTCTGTTGGGGTGGAGGCTCAACTA AGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGGCTATCT GTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGATGATGT GGGCTCTAGAATATGATCCTGACTTGTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAA GGAAAAGCAAAGTCAATACATCAATGCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCC TCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGG ATGATGTTGTCAAGATATTGAATGACACAACTGGAAATCTAGATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCAC AAGAAATACTTGAGAAAGCAAACAAAATCATAG
Protein sequence (LotjaGi3g1v0237400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRDPGVPADSFYEIRPECTDVPISRFKIKGVHPSIRGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECRQLFP LVGSGRFITAPVISEDGQPIQEPLVLSETNSAEGLAVLPQDNNWPSSLNAASNVETVADKRVVQWLLTLHQIGLDVVRTD RTLVFYEKQENLAKLWDVLALYAWIDKDVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTNNSVGVEAQL SNLASITQVIDPKLHKHLEHLGGGGYLFAFRMLMVLFRREFSFCDSLFLWEMMWALEYDPDLFLMYEEPQSATKKTEGPK GKAKSIHQCGKYERANMRNGTKNSEAPLPISIFLAASVLKDKSAELLHEARGLDDVVKILNDTTGNLDAKKACSGAMKLH KKYLRKQTKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 30 | 29 | 9.8E-186 | – | |
| PANTHER | 2 | 30 | 29 | 9.8E-186 | – | |
| SUPERFAMILY | 26 | 257 | 232 | 1.02E-47 | ||
| SMART | 28 | 320 | 293 | 4.8E-30 | ||
| ProSiteProfiles | 31 | 297 | 267 | 34.62 | ||
| PANTHER | 33 | 408 | 376 | 9.8E-186 | – | |
| PANTHER | 33 | 408 | 376 | 9.8E-186 | – | |
| Gene3D | 119 | 221 | 103 | 4.4E-15 | – | |
| Pfam | 146 | 294 | 149 | 9.7E-34 | ||
| SUPERFAMILY | 235 | 403 | 169 | 2.51E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0237400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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