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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0242600 |
| Transcript ID | LotjaGi3g1v0242600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G03840.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9ZWA6|IDD3_ARATH Zinc finger protein MAGPIE; TrEMBL-Plants: tr|A0A1J7HA73|A0A1J7HA73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:39410764..39414528) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAGCAACAACAAATTATGGGATAATCATGCCAATTGGAGATTAACTTTCTTCCAACCTCATCATATGTATCATCA TACAACTTTGCTTCACCTCTTCTCCCTTTCTTTGCCCCCTCCTTTATCTCTCTCTCTCTCCCCTTTAACTTTTCACCGCC TCCCACAGCATCTTCATTTTTCTATTCCACCTAAAAAGTAGATAATTTAAATCAACTAAAACACATGAGAGAGAAAGAGA GACAGAGAGATCCCATCTTGCATATATCAGATCATGTTGTTTAGGGTTGGAGCCTTGTATTAATTAACAAGGCTTGCATA TATAGCTACCCATTCTCTTGGGTTTTCATGTAATCCAAACACTAACTTGTCATCACACAGAACTGATTGTGAGTTTCTTA TCATGAATTGAGTCAAACTAAGAACTTATAGAAGTAAGAGCAGCTTCAGATTCTAAAAAAGATGGATGAAGGATCAGAAA TCACAAATGGTTTCCCTCATCAGAACCAAACTACTGGTTCATCTAACAATCTTCCTGTTTTGAAGAGGAAGAGAAACCTT CCAGGAAACCCAGGCATGCTTGTTTCTTTCAATGCTTATTATTCTCACCTTATCTTTTTTTTTCTCTCTTTAACTTTCTG ATCATAGGTGGGAGTTTATCTTTACCTTAATCTTATCCGAGAAAGATGTTCTCGGAAATTTTCTATGATTGATCTAATTA ATTTTTTTCTATTAAAAAAAACTTTCTTATCATAGGTATATTCAAAGCTAATTAGCTTTTCTTATCATGAAAGAAAAAAC AATGATTTTATGGGAACTGAATTGAATCTTCTGTTTGCCTGTACAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAA GACTTTGATGGCCACCAACAGATTCTTGTGTGAAACATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATC GACGCGGACACAACCTTCCATGGAAGCTCAAGCAAAGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAG AAGAGTTGTGTCCACCATGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGG AGAAAAGAAGTGGAAGTGCGACAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTG GCACCAGAGAATACAAGTGTGATTGTGGAACTATCTTTTCAAGGTAACTAACCTATCTTGCTGATAACAGCACCGTTATC CGTTCTAGCATGTATAGATTAACTTCTCTTTCATCAAAATCAATTCTGAATCATAGAAGTTACTCATAAAAAGTCCGTAC CGAATTGGTTATAGCTTCAAAATAGAAAGGTGTTCAAAAATCTATTTCTAATATAGGGGATCAAGTTATGCAAAAAGTGG TAACTTAATCACTAGAGGAAAATAAGTTTGGTTGAAAAAAACAAAAACTTGAAACAAGGCACACGAGGTTTTGATCATCT TTTTTGTAATTTTTGCCCTAAACGACAAAAGTTCATTGTTTGGAACTATCTTAGTTAACTTCATCTTAGTTCTTTGACAC TAGTTTGGGGTTATAACCCCTACAGGCTACTTGGTATAAGTCATAATGTTGTCCTCATGTTACCAAGTTACTCATCCTTG GACTTTTGTTGAGCTCAAATATTGGACTTCTTACATGCCTCTTCTAATTATGGAAATTGTGTTGGGAAGAACCCAAAACA TGTAGATACCCAGAAAAGAAAATAAAAAAGAAAAAGAAATAATATGTGATATATGATTTAATGGGATAATAAAAAAAGAT AAAGAGAAAATGAGGTATAGGTGTAATGCTTGTGTATAAATATTAAAAGAGTTTTGATATATACACACATCAACTTCTTT TCCACCTTCATTTTCTATCTATTTCTCTCTCACCTATCAAATTATCATTATTACTATTATTATTATGTTCATGGTTTATC AATATTTTTGATTGAGCAGGAGGGATAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCTAGG GTAAATGCAACATCAGACATACACAACACCTTAGGGGGTAACATTGGTTACAATAATGTAATGGGAGCATCCCTAGGTCC AAACATGTCCACTCATTTTTCTTCTATCTTCAAGCCAATAATATCAACCACTGACGAAACAAGCAATAATCAAACATCCA GAGGGATATCCCTTTGGATGAACCATGCATCTCAAGCTCATGAAACAATAGCTAATAATTTGCATCATGAGATTCATGAA CTTGGCTCTGCAACAACCTCATCAAATGAAATATATGGTGGGAACCCACTTGTCCAATGCTCAAACAATCCTCCACATTC CAATTATCATCTAAATTGGGTGTTTGGAACCAAGCTTTCTCCCATTGGAAGCCAAGAGTTTACTACTAGCAATATTGGTA GTACTACATCACTTCCACTAGGAAACAACATTGTTAAAGATGCTGCAAGCCAAGTGACAAGTGTTCCTTCATTGTACAGC TCCCAACACCAATCATCACATCAAACAACAACATCTTCATCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGC TGCACAGATTGGAGCAACCTCAACAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAATAACACCAGTC AAGTACTACAAGATGGGAACAAATTTAATGCTGTGTACGGTTCAGGTTCAGTGCTCAGTTTCACCAGCATTGGGAGTGAG GCAGAGAGCTCTGCATTGTGTGACTTCTCACAAATGCACCCTGCCAAACGCAGACATGTTCAGAGTGAAGAGGGTGGAGG GGGGCAAACTAGGGATTTTCTTGGGGTTGGTGTGCAAACCCTTTACCACCCTTCAACAATCAATGGGTGGATTTGATTTT ATCTTTGTAAATTCAAGGCATATTTTGGAACGCAAATCTGAAGTCAAAATCAATTATGAGGTGAGCTCTTCTGAGCACCT TCATTGTCTAAGAATTGATTAATTACAAGTTTGGATTATTTTTTTGTTTCATCATAATCAGCTATGGAACCCAAATTTAG CTTCTACCCACAATTGAGTTTGACGAAAAATCAATTGTAAAAGGATTTACAACCACTTCGAGGAGAAAACTGATTCAAAC ATGCTATATGTGAACTTAAGTTCTAAGATTTTTTATTTCTTTTACCTAGTGGAAAGTGGAAATTACAAAAAAAAAAAGTA AAAGGTGAATGGAACTGAAGTTGAAGTTGGAGGAACAGAATTAAGTAGGTGGAAACTTTGCAGGGAGGGAAAAGGTGGGA ATTGAGTGCTTGATGGAGGCTGAAAAGTATGCTGTTCCGAATTTTTTTGAATTATATTGCTGAAAGGAGAGAGAGATCCA TGCATATTCTTTTGAATGCTGAAAGCTGTAGTCTTTTGAAAATGGTGGCTTTAATTTTTTATAAAGGGGGTGAGGTTGTG GAGAAGTGGGGGCAAAAAGCAAAGGACAAGCTTGGGAACTCCATTATTGCACCTTTCATCTTTGTTATGGTTGTTGTCTT GTCAAACTGGATTTTAAAGAGAATTTTCAGTGACCAAAAAGCTTCATTATATTCTAGTACAAATAGGCTCTTGGCCTATA GATTAAAATAAATTAATGTACCCTTTTCATTCACAGCATACATGTACAGATTAATATGCATCAAGTTGGACCTAGAAGAT TCAGG
CDS sequence (LotjaGi3g1v0242600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTGAATTGAATCTTCTGTTTGCCTGTACAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTTTGAT GGCCACCAACAGATTCTTGTGTGAAACATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGGAC ACAACCTTCCATGGAAGCTCAAGCAAAGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTTGT GTCCACCATGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAGAA GTGGAAGTGCGACAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAGAG AATACAAGTGTGATTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTGGCA GAAGAAACAGCTAGGGTAAATGCAACATCAGACATACACAACACCTTAGGGGGTAACATTGGTTACAATAATGTAATGGG AGCATCCCTAGGTCCAAACATGTCCACTCATTTTTCTTCTATCTTCAAGCCAATAATATCAACCACTGACGAAACAAGCA ATAATCAAACATCCAGAGGGATATCCCTTTGGATGAACCATGCATCTCAAGCTCATGAAACAATAGCTAATAATTTGCAT CATGAGATTCATGAACTTGGCTCTGCAACAACCTCATCAAATGAAATATATGGTGGGAACCCACTTGTCCAATGCTCAAA CAATCCTCCACATTCCAATTATCATCTAAATTGGGTGTTTGGAACCAAGCTTTCTCCCATTGGAAGCCAAGAGTTTACTA CTAGCAATATTGGTAGTACTACATCACTTCCACTAGGAAACAACATTGTTAAAGATGCTGCAAGCCAAGTGACAAGTGTT CCTTCATTGTACAGCTCCCAACACCAATCATCACATCAAACAACAACATCTTCATCATCAGCAAACATGTCAGCCACAGC TTTGTTGCAGAAAGCTGCACAGATTGGAGCAACCTCAACAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCA GTAATAACACCAGTCAAGTACTACAAGATGGGAACAAATTTAATGCTGTGTACGGTTCAGGTTCAGTGCTCAGTTTCACC AGCATTGGGAGTGAGGCAGAGAGCTCTGCATTGTGTGACTTCTCACAAATGCACCCTGCCAAACGCAGACATGTTCAGAG TGAAGAGGGTGGAGGGGGGCAAACTAGGGATTTTCTTGGGGTTGGTGTGCAAACCCTTTACCACCCTTCAACAATCAATG GGTGGATTTGA
Protein sequence (LotjaGi3g1v0242600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTELNLLFACTDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPRKRVYVCPEKSC VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALA EETARVNATSDIHNTLGGNIGYNNVMGASLGPNMSTHFSSIFKPIISTTDETSNNQTSRGISLWMNHASQAHETIANNLH HEIHELGSATTSSNEIYGGNPLVQCSNNPPHSNYHLNWVFGTKLSPIGSQEFTTSNIGSTTSLPLGNNIVKDAASQVTSV PSLYSSQHQSSHQTTTSSSSANMSATALLQKAAQIGATSTTDPSFLGSLGLKCSNNTSQVLQDGNKFNAVYGSGSVLSFT SIGSEAESSALCDFSQMHPAKRRHVQSEEGGGGQTRDFLGVGVQTLYHPSTINGWI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 456 | 445 | 6.1E-172 | – | |
| PANTHER | 12 | 456 | 445 | 6.1E-172 | – | |
| Gene3D | 28 | 55 | 28 | 2.4E-5 | – | |
| SUPERFAMILY | 31 | 128 | 98 | 8.67E-7 | ||
| ProSiteProfiles | 32 | 54 | 23 | 11.593 | ||
| ProSitePatterns | 34 | 54 | 21 | - | ||
| Gene3D | 93 | 169 | 77 | 2.6E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0242600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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