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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013087
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 289 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 5.829s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065479.1
n.a. PREDICTED: zinc finger protein MAGPIE-like [Glycine max] gi|356533571|ref|XP_003535336.1| chr0 22769859 22774211 +
2 domain predictions
1 GO term
Lj0g3v0071619.1
n.a. PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max] gi|356545021|ref|XP_003540944.1| chr0 26320735 26323685 +
2 domain predictions
1 GO term
Lj0g3v0072589.1
n.a. PREDICTED: zinc finger protein 6-like [Cicer arietinum] gi|502165939|ref|XP_004513737.1| chr0 27026138 27026634 +
2 domain predictions
1 GO term
Lj0g3v0106299.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Glycine max] gi|356533957|ref|XP_003535524.1| chr0 45691078 45700478 +
2 domain predictions
1 GO term
Lj0g3v0114989.1
n.a. PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 [Cicer arietinum] gi|502135682|ref|XP_004502417.1| chr0 50474968 50476101 +
2 domain predictions
1 GO term
Lj0g3v0114999.1
n.a. n.a. chr0 50475186 50476102 -
2 domain predictions
1 GO term
Lj0g3v0166949.1
n.a. PREDICTED: zinc finger protein JACKDAW-like [Glycine max] gi|356541292|ref|XP_003539112.1| chr0 79348883 79353673 +
2 domain predictions
1 GO term
Lj0g3v0190749.1
n.a. Zinc finger family protein isoform 3, partial [Theobroma cacao] gi|508705269|gb|EOX97165.1| chr0 93258543 93259155 +
2 domain predictions
1 GO term
Lj0g3v0230959.1
n.a. Zinc finger protein 160 [Acromyrmex echinatior] gi|332018216|gb|EGI58821.1| chr0 119712734 119713364 -
2 domain predictions
1 GO term
Lj0g3v0231229.1
n.a. PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 [Cicer arietinum] gi|502135682|ref|XP_004502417.1| chr0 119890495 119891573 +
2 domain predictions
1 GO term
Lj0g3v0300749.1
n.a. PREDICTED: zinc finger protein JACKDAW-like [Glycine max] gi|356503710|ref|XP_003520648.1| chr0 156303204 156305789 +
2 domain predictions
1 GO term
Lj0g3v0315789.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1| chr0 164853250 164859741 +
2 domain predictions
1 GO term
Lj0g3v0324749.1
n.a. PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] gi|356542371|ref|XP_003539640.1| chr0 169775815 169778890 +
2 domain predictions
1 GO term
Lj0g3v0326259.1
n.a. PREDICTED: transcription factor IIIA-like [Cicer arietinum] gi|502123985|ref|XP_004498336.1| chr0 170543439 170545979 +
2 domain predictions
1 GO term
Lj0g3v0326259.2
n.a. PREDICTED: zinc finger protein 84-like [Glycine max] gi|356499400|ref|XP_003518529.1| chr0 170543439 170545979 +
2 domain predictions
1 GO term
Lj0g3v0346859.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera] gi|359475946|ref|XP_002278933.2| chr0 181960728 181964503 -
2 domain predictions
1 GO term
Lj0g3v0351859.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356523372|ref|XP_003530314.1| chr0 185009535 185013423 +
2 domain predictions
1 GO term
Lj0g3v0351959.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Glycine max] gi|356518921|ref|XP_003528124.1| chr0 185067569 185075929 +
2 domain predictions
1 GO term
Lj0g3v0352099.1
n.a. PREDICTED: probable transcriptional regulator RABBIT EARS-like [Glycine max] gi|356537940|ref|XP_003537464.1| chr0 185173719 185175114 -
2 domain predictions
1 GO term
Lj1g3v0128880.1
n.a. DUO1 activated zinc finger 2 [Arabidopsis thaliana] gi|15236937|ref|NP_195254.1| chr1 1559232 1559807 +
2 domain predictions
1 GO term
Lj1g3v2348940.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356536786|ref|XP_003536915.1| chr1 27654491 27658672 -
2 domain predictions
1 GO term
Lj1g3v3443990.1
n.a. PREDICTED: transcriptional regulator TAC1-like [Cicer arietinum] gi|502103005|ref|XP_004492174.1| chr1 39885916 39887184 -
2 domain predictions
1 GO term
Lj1g3v4288730.1
n.a. PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] gi|356504819|ref|XP_003521192.1| chr1 50428072 50431177 +
2 domain predictions
1 GO term
Lj1g3v4447050.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356536786|ref|XP_003536915.1| chr1 52043687 52046591 +
2 domain predictions
1 GO term
Lj1g3v4483350.1
n.a. PREDICTED: transcriptional regulator SUPERMAN-like [Cicer arietinum] gi|502115764|ref|XP_004495287.1| chr1 52466280 52466948 +
2 domain predictions
1 GO term
Lj1g3v4483360.1
n.a. PREDICTED: transcriptional regulator SUPERMAN-like [Cicer arietinum] gi|502115063|ref|XP_004495117.1| chr1 52475622 52477752 +
2 domain predictions
1 GO term
Lj1g3v4483370.1
n.a. PREDICTED: transcriptional regulator SUPERMAN-like [Cicer arietinum] gi|502115063|ref|XP_004495117.1| chr1 52475819 52476427 +
2 domain predictions
1 GO term
Lj1g3v4695470.1
n.a. PREDICTED: histone deacetylase HDT1-like isoform X2 [Cicer arietinum] gi|502111709|ref|XP_004494142.1| chr1 55923044 55927233 -
2 domain predictions
1 GO term
Lj1g3v4914260.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356572684|ref|XP_003554496.1| chr1 59483347 59486035 +
2 domain predictions
1 GO term
Lj1g3v4921080.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356576787|ref|XP_003556511.1| chr1 59838908 59842695 -
2 domain predictions
1 GO term
Lj2g3v0216910.1
n.a. PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Glycine max] gi|356576169|ref|XP_003556206.1| chr2 3751658 3753917 -
2 domain predictions
1 GO term
Lj2g3v0635520.1
n.a. PREDICTED: zinc finger protein JACKDAW-like [Cicer arietinum] gi|502164922|ref|XP_004513329.1| chr2 9748167 9750985 +
2 domain predictions
1 GO term
Lj2g3v1168860.1
n.a. Zinc finger-like protein [Medicago truncatula] gi|357488357|ref|XP_003614466.1| chr2 18470871 18472783 +
2 domain predictions
1 GO term
Lj2g3v1254030.1
n.a. PREDICTED: UPF0396 protein-like [Cicer arietinum] gi|502094133|ref|XP_004490147.1| chr2 20054313 20057152 +
2 domain predictions
1 GO term
Lj2g3v1369250.1
n.a. PREDICTED: zinc finger protein 5-like [Cicer arietinum] gi|502141274|ref|XP_004504507.1| chr2 21541523 21542734 +
2 domain predictions
1 GO term
Lj2g3v1779750.1
n.a. zinc finger protein [Morella rubra] gi|427199310|gb|AFY26885.1| chr2 27154631 27157764 +
2 domain predictions
1 GO term
Lj2g3v1984740.1
n.a. PALMATE-LIKE PENTAFOLIATA1 [Lotus japonicus] gi|298201172|gb|ADI60288.1| chr2 29192295 29193883 -
2 domain predictions
1 GO term
Lj2g3v2001830.1
n.a. PREDICTED: zinc finger protein ZAT9-like [Glycine max] gi|356497137|ref|XP_003517419.1| chr2 30094643 30095488 -
2 domain predictions
1 GO term
Lj2g3v2234090.1
n.a. PREDICTED: transcriptional regulator TAC1-like [Cicer arietinum] gi|502122619|ref|XP_004497834.1| chr2 33028281 33028829 +
2 domain predictions
1 GO term
Lj3g3v0014460.1
n.a. PREDICTED: zinc finger protein 1-like [Glycine max] gi|356547466|ref|XP_003542133.1| chr3 324014 325912 +
2 domain predictions
1 GO term
Lj3g3v0275840.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1| chr3 1729609 1733838 +
2 domain predictions
1 GO term
Lj3g3v0323160.1
n.a. Beta-galactosidase 17 [Theobroma cacao] gi|508779864|gb|EOY27120.1| chr3 2361968 2376967 -
2 domain predictions
1 GO term
Lj3g3v0323160.2
n.a. Beta-galactosidase 17 [Theobroma cacao] gi|508779864|gb|EOY27120.1| chr3 2362354 2376967 -
2 domain predictions
1 GO term
Lj3g3v0323160.3
n.a. Zinc finger, C2H2-type [Medicago truncatula] gi|87162706|gb|ABD28501.1| chr3 2362354 2376967 -
2 domain predictions
1 GO term
Lj3g3v0488270.1
n.a. PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] gi|356542371|ref|XP_003539640.1| chr3 5689685 5690122 +
2 domain predictions
1 GO term
Lj3g3v1113580.1
n.a. PREDICTED: zinc finger protein STOP1 homolog [Glycine max] gi|356541958|ref|XP_003539439.1| chr3 15031092 15033154 +
2 domain predictions
1 GO term
Lj3g3v1159150.1
n.a. PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] gi|356542013|ref|XP_003539466.1| chr3 15637574 15640850 -
2 domain predictions
1 GO term
Lj3g3v1706700.1
n.a. PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] gi|356557613|ref|XP_003547110.1| chr3 21656849 21660139 -
2 domain predictions
1 GO term
Lj3g3v2691880.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356528841|ref|XP_003533006.1| chr3 32729439 32732399 +
2 domain predictions
1 GO term
Lj3g3v2824300.1
n.a. PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max] gi|356546983|ref|XP_003541898.1| chr3 34748975 34752280 -
2 domain predictions
1 GO term