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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0242600 |
| Transcript ID | LotjaGi3g1v0242600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G03840.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9ZWA6|IDD3_ARATH Zinc finger protein MAGPIE; TrEMBL-Plants: tr|A0A1J7HA73|A0A1J7HA73_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:39410999..39414413) extracted from Lotus japonicus Gifu genome v1.2.
CCCCTCCTTTATCTCTCTCTCTCTCCCCTTTAACTTTTCACCGCCTCCCACAGCATCTTCATTTTTCTATTCCACCTAAA AAGTAGATAATTTAAATCAACTAAAACACATGAGAGAGAAAGAGAGACAGAGAGATCCCATCTTGCATATATCAGATCAT GTTGTTTAGGGTTGGAGCCTTGTATTAATTAACAAGGCTTGCATATATAGCTACCCATTCTCTTGGGTTTTCATGTAATC CAAACACTAACTTGTCATCACACAGAACTGATTGTGAGTTTCTTATCATGAATTGAGTCAAACTAAGAACTTATAGAAGT AAGAGCAGCTTCAGATTCTAAAAAAGATGGATGAAGGATCAGAAATCACAAATGGTTTCCCTCATCAGAACCAAACTACT GGTTCATCTAACAATCTTCCTGTTTTGAAGAGGAAGAGAAACCTTCCAGGAAACCCAGGCATGCTTGTTTCTTTCAATGC TTATTATTCTCACCTTATCTTTTTTTTTCTCTCTTTAACTTTCTGATCATAGGTGGGAGTTTATCTTTACCTTAATCTTA TCCGAGAAAGATGTTCTCGGAAATTTTCTATGATTGATCTAATTAATTTTTTTCTATTAAAAAAAACTTTCTTATCATAG GTATATTCAAAGCTAATTAGCTTTTCTTATCATGAAAGAAAAAACAATGATTTTATGGGAACTGAATTGAATCTTCTGTT TGCCTGTACAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTTTGATGGCCACCAACAGATTCTTGTGTGAAA CATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGGACACAACCTTCCATGGAAGCTCAAGCAA AGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGATCCTTCAAGGGCTCT TGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGAAGTGCGACAAGTGCTCAAAGC GTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAGAGAATACAAGTGTGATTGTGGAACTATC TTTTCAAGGTAACTAACCTATCTTGCTGATAACAGCACCGTTATCCGTTCTAGCATGTATAGATTAACTTCTCTTTCATC AAAATCAATTCTGAATCATAGAAGTTACTCATAAAAAGTCCGTACCGAATTGGTTATAGCTTCAAAATAGAAAGGTGTTC AAAAATCTATTTCTAATATAGGGGATCAAGTTATGCAAAAAGTGGTAACTTAATCACTAGAGGAAAATAAGTTTGGTTGA AAAAAACAAAAACTTGAAACAAGGCACACGAGGTTTTGATCATCTTTTTTGTAATTTTTGCCCTAAACGACAAAAGTTCA TTGTTTGGAACTATCTTAGTTAACTTCATCTTAGTTCTTTGACACTAGTTTGGGGTTATAACCCCTACAGGCTACTTGGT ATAAGTCATAATGTTGTCCTCATGTTACCAAGTTACTCATCCTTGGACTTTTGTTGAGCTCAAATATTGGACTTCTTACA TGCCTCTTCTAATTATGGAAATTGTGTTGGGAAGAACCCAAAACATGTAGATACCCAGAAAAGAAAATAAAAAAGAAAAA GAAATAATATGTGATATATGATTTAATGGGATAATAAAAAAAGATAAAGAGAAAATGAGGTATAGGTGTAATGCTTGTGT ATAAATATTAAAAGAGTTTTGATATATACACACATCAACTTCTTTTCCACCTTCATTTTCTATCTATTTCTCTCTCACCT ATCAAATTATCATTATTACTATTATTATTATGTTCATGGTTTATCAATATTTTTGATTGAGCAGGAGGGATAGCTTCATC ACCCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAGACATACACAACACCTTAGG GGGTAACATTGGTTACAATAATGTAATGGGAGCATCCCTAGGTCCAAACATGTCCACTCATTTTTCTTCTATCTTCAAGC CAATAATATCAACCACTGACGAAACAAGCAATAATCAAACATCCAGAGGGATATCCCTTTGGATGAACCATGCATCTCAA GCTCATGAAACAATAGCTAATAATTTGCATCATGAGATTCATGAACTTGGCTCTGCAACAACCTCATCAAATGAAATATA TGGTGGGAACCCACTTGTCCAATGCTCAAACAATCCTCCACATTCCAATTATCATCTAAATTGGGTGTTTGGAACCAAGC TTTCTCCCATTGGAAGCCAAGAGTTTACTACTAGCAATATTGGTAGTACTACATCACTTCCACTAGGAAACAACATTGTT AAAGATGCTGCAAGCCAAGTGACAAGTGTTCCTTCATTGTACAGCTCCCAACACCAATCATCACATCAAACAACAACATC TTCATCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCACAGATTGGAGCAACCTCAACAACTGACCCAT CATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAATAACACCAGTCAAGTACTACAAGATGGGAACAAATTTAATGCTGTG TACGGTTCAGGTTCAGTGCTCAGTTTCACCAGCATTGGGAGTGAGGCAGAGAGCTCTGCATTGTGTGACTTCTCACAAAT GCACCCTGCCAAACGCAGACATGTTCAGAGTGAAGAGGGTGGAGGGGGGCAAACTAGGGATTTTCTTGGGGTTGGTGTGC AAACCCTTTACCACCCTTCAACAATCAATGGGTGGATTTGATTTTATCTTTGTAAATTCAAGGCATATTTTGGAACGCAA ATCTGAAGTCAAAATCAATTATGAGGTGAGCTCTTCTGAGCACCTTCATTGTCTAAGAATTGATTAATTACAAGTTTGGA TTATTTTTTTGTTTCATCATAATCAGCTATGGAACCCAAATTTAGCTTCTACCCACAATTGAGTTTGACGAAAAATCAAT TGTAAAAGGATTTACAACCACTTCGAGGAGAAAACTGATTCAAACATGCTATATGTGAACTTAAGTTCTAAGATTTTTTA TTTCTTTTACCTAGTGGAAAGTGGAAATTACAAAAAAAAAAAGTAAAAGGTGAATGGAACTGAAGTTGAAGTTGGAGGAA CAGAATTAAGTAGGTGGAAACTTTGCAGGGAGGGAAAAGGTGGGAATTGAGTGCTTGATGGAGGCTGAAAAGTATGCTGT TCCGAATTTTTTTGAATTATATTGCTGAAAGGAGAGAGAGATCCATGCATATTCTTTTGAATGCTGAAAGCTGTAGTCTT TTGAAAATGGTGGCTTTAATTTTTTATAAAGGGGGTGAGGTTGTGGAGAAGTGGG
CDS sequence (LotjaGi3g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAGGATCAGAAATCACAAATGGTTTCCCTCATCAGAACCAAACTACTGGTTCATCTAACAATCTTCCTGTTTT GAAGAGGAAGAGAAACCTTCCAGGAAACCCAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTTTGATGGCCA CCAACAGATTCTTGTGTGAAACATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGGACACAAC CTTCCATGGAAGCTCAAGCAAAGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCA CCATGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGA AGTGCGACAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAGAGAATAC AAGTGTGATTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTGGCAGAAGA AACAGCTAGGGTAAATGCAACATCAGACATACACAACACCTTAGGGGGTAACATTGGTTACAATAATGTAATGGGAGCAT CCCTAGGTCCAAACATGTCCACTCATTTTTCTTCTATCTTCAAGCCAATAATATCAACCACTGACGAAACAAGCAATAAT CAAACATCCAGAGGGATATCCCTTTGGATGAACCATGCATCTCAAGCTCATGAAACAATAGCTAATAATTTGCATCATGA GATTCATGAACTTGGCTCTGCAACAACCTCATCAAATGAAATATATGGTGGGAACCCACTTGTCCAATGCTCAAACAATC CTCCACATTCCAATTATCATCTAAATTGGGTGTTTGGAACCAAGCTTTCTCCCATTGGAAGCCAAGAGTTTACTACTAGC AATATTGGTAGTACTACATCACTTCCACTAGGAAACAACATTGTTAAAGATGCTGCAAGCCAAGTGACAAGTGTTCCTTC ATTGTACAGCTCCCAACACCAATCATCACATCAAACAACAACATCTTCATCATCAGCAAACATGTCAGCCACAGCTTTGT TGCAGAAAGCTGCACAGATTGGAGCAACCTCAACAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAAT AACACCAGTCAAGTACTACAAGATGGGAACAAATTTAATGCTGTGTACGGTTCAGGTTCAGTGCTCAGTTTCACCAGCAT TGGGAGTGAGGCAGAGAGCTCTGCATTGTGTGACTTCTCACAAATGCACCCTGCCAAACGCAGACATGTTCAGAGTGAAG AGGGTGGAGGGGGGCAAACTAGGGATTTTCTTGGGGTTGGTGTGCAAACCCTTTACCACCCTTCAACAATCAATGGGTGG ATTTGA
Protein sequence (LotjaGi3g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEGSEITNGFPHQNQTTGSSNNLPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHN LPWKLKQRTNKEPRKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREY KCDCGTIFSRRDSFITHRAFCDALAEETARVNATSDIHNTLGGNIGYNNVMGASLGPNMSTHFSSIFKPIISTTDETSNN QTSRGISLWMNHASQAHETIANNLHHEIHELGSATTSSNEIYGGNPLVQCSNNPPHSNYHLNWVFGTKLSPIGSQEFTTS NIGSTTSLPLGNNIVKDAASQVTSVPSLYSSQHQSSHQTTTSSSSANMSATALLQKAAQIGATSTTDPSFLGSLGLKCSN NTSQVLQDGNKFNAVYGSGSVLSFTSIGSEAESSALCDFSQMHPAKRRHVQSEEGGGGQTRDFLGVGVQTLYHPSTINGW I
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 8 | 27 | 20 | - | – | |
| PANTHER | 20 | 481 | 462 | 1.3E-180 | – | |
| PANTHER | 20 | 481 | 462 | 1.3E-180 | – | |
| Gene3D | 53 | 80 | 28 | 2.5E-5 | – | |
| SUPERFAMILY | 56 | 153 | 98 | 6.24E-7 | ||
| ProSiteProfiles | 57 | 79 | 23 | 11.593 | ||
| ProSitePatterns | 59 | 79 | 21 | - | ||
| Gene3D | 118 | 194 | 77 | 2.8E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0242600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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