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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0315800 |
Transcript ID | LotjaGi3g1v0315800.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66875955..66880425) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTCTTTGGATAATGTAGTATGGGTAACAGGGTAAGGGTTTTTTTTCATGCTAGGATATCTTTTGGTTCTTGATTCT GCATTTTTGAGTATTTGAAAACTAATCATATCTCTTGAGAAGCTGAGACATATTCCAGTGTTGTTTACAATCCACTCCTT TTGAGGAAATCTGTCCCTATATCTCCGTTTCCTCTTTGTGCAAACAGTGTTTGCAATCTCTGACCATTTAGATGTTATAT TTTCGATATTTATACTGAGGTTCATTTTGAAACTGTTTCTTTCTTTTTTGTGCAGAAAATATGCAAATAACCTGCGAGGC ATCTCTGAAATGCCTCCAGGGAAAGGGATTCCCTAGCACTTTTCAGTGTAATGGGAGTTCTATTACAGAGCTAAAAAATG ATCCTGGTACTCATCCAGCTGGGGATGTTTCTGAACCTAACCGCCGTCTTGGCAGTGAGTTTCTGGAGCCTTCCAATGAA TTTCACAGTAAACCTACTTATCACCATGAGTACAACACCTGGACATCCTGCCATTTTCACTCTCCCAAAGTGCACCAATG CCCAATGAATGCTTTTGAGAGCCACTTTTATCCTTATCCTGTCGAGAACCAGCTTCAGTATGTTCCAGCTAATATGTTCG CTCAGAGTTACCCCCGGGAGCAATTTCAGGAATTTCAATATTTCGTGGTCATAGACTTCGAGGCTACCTGTGATAAGGAT AAAAATCCCCACCCTCAAGAAATAATTGAGTTCCCATCTGTCATAGTGAGTAGTGTGACTGGCCAGCTGGAAGCATGTTT CCAAACATATGTGAGGCCTACCTGCAATCAGCATCTGACTGATTTCTGCAAGGATCTGACTGGTATCCAGCAAATTCAGG TGTGTTAAGAAAAAATCTTACCTTTTAACCATGATGAAGTGATACAAAAAAAAAAAACAGGACAAACCATTATGTCTTTC TTCTGTGATCTTTTCAACTCTTCATTTTGTCCTTGTTATTGGACTAACAATTACATTGCTATGTGCATATCAAATATGGT GATTTCTACAATGTTTGTAATTGTAAAAGCTAACTTCCTGGCACACCGTGAAAGTAATTTCTACAGTAGTCTATGTGCAT GTTTGGTAATAAGGTCCATACACACTCCTAGGCACGTTTCATGTTAAGCTCCAACGGGTAGCTTCTAATAGACATGCATA TAGGACCACTGGGACGTGGTTCCAAATGAGCTATATATCCCCATCTCATTGGCTAGTCTGATTGTCTACTCGGGAGTATT AGCAAAACAACAAGTTTGTCAAGGTTTGATTTGAGAAGAATTGTCTAATTTTTCCAAATGGGTAATTATTTATACTGTTT ACAGTAGTAATGGCTAGATGAATCATTTTCTACACTACATTAGAGCCAACCAAATGAATCTATCAGTAATGACAGCTACT CATGTGTTTAAACCTAATACTAATTATGAATGTGCTTTAGTCTAACAGATTTTAATGCTCACCCTAAGTTAGTCCATAAA GTTGACCTAAGGCCTTCAAAGGGATTTGGTGAATATTTAAGCCAACTCCTTTTTTATTTATTTAATAGAATGAGTAGTGT TCAAAATGACAATCAATCTCTGTGTTCTGCTCTTTCATGTTACTGGGATAGACACAATTTGTACTGCAGCTTGGCTGTCT CAAATCAGTTTCATTTCCATAACATTTCCCAATTCAAGCTTGTGAAGCAACTGTTTAACCATATTAGTTCTAGACTTCTA GGTAGATATTGCCAATTGCAATAGTATTGTACTCGACCACTCACTGGATCTAGCAAGTATTTTGTGTTTTCACTCCTCAT GAGATTATGTTACCTCCTACAAAAACTAAATATGCTGAAATTAAGCTTCTATCAATGGTGAACTTGCTCAACCAGCATTT GAATAACCAACAACTTCAGCTTTGCCTTTGTTTTCATAAAGTAACCCTTTACTCGGTGCACTATTGATTTATCTCAGAAT GCGGGCCACAAAGTCCCAATGACTATCTAAAACAAGGAGCCTTTAATAATTAACTTCCTACACTTACAAAAAGAATAATA TTTGATCTAGCTACTCTAAGGTAGTTGAGTTTACTGACAAGACATCTATATCTACAAGGGTTCGTCAATTGCTCCACCTA ACCTGGTAGGAGTTTGACATTAGGGTTCATTTGGAGTATTACTAGGGTTGTAGTTCAACATGGCTGTTTCCTCAAGCATT TTTATAGCATACTTTGTTTGTGTGATGGCAATCCTGACATTATATTGAGCAACTGAAATCCCCAAAAAGTACTAGAGGGT CCAAATCTTTTGTTGATAGTGGTGTGACTGATGTTGCTTAAAATTCTGGTTCAAGATTTTGTTGCTAGGCTAATCATTTC TCATGACAACAATGTCATCTACATGAACAACTAGGTGAATGCATTGATCAGGTGATATAACTGAACCTTCCAAACCAAGC ATAGGATGATTGTTTTTGTCCATAGAGTAGAGGTGGCATCTGAGTTGGGCACATCATGTGCAGTATGACCCATAGTTGTT GCTAGACCCGCTTATTGCAACTCACCATGCTGAAAGGCCTTATTAATATCTAACTAATGAAGTGGCCATTAATGAATGGT AGCCTACTAGCCTTCACAACAAAGAGGAAAAATAGTTATTTTGGCCACAAAAGAAAAAGCATTTCGATAATTGAGGCCAA ATAGTTGTGTATATCCTATGGCCACAAGTAGGGATGTCAAAATTATCCACACTTGCGGATATCCGTGGATAAAAACCCTT TATGAGTAAAATGTTCTTAGAGAGCAAACCTACACTAGTTACCTAAGAGTTAATGGCAGCCAATACTAGCAATGCCTACG ATTTACTCATTATATATGTGCTTAAACGTGCCATTTGATTCTAGCAATATCTATGTTCTGGATTAATTATAAGAGGAATC ATTTCCTAAATTGGAGCTAACCAACACTGTTTACCTAAGTGTTAAAAAGATAATACTTCTCATTATACACATGCTTAATC CCATCTAGTTCTAGCTATCTAGACTTTGGTCTACTTATTGAATTTTGATTAATTTGCCTGAACTTGCACTGTATTTTCTC CATGGTACGGATTTTATACTCTTTATAACAATACATTGCAGTTATGATTGTCAGAATAATGTGTACAATATTCAGTTTGA GCATATTCTGTTTCTATTTCTTTATCCAATGTGTCAAGTAATTGAAATCTAACATTCTACTATTGGTTGGCATTGTATAT AATATCAAATGATTTGAAGTGATTAATTTGAAAGTGGAAAAGTTGTGGGGAACCTGGACATTAAGTAGAAATTCATGTCA AGTGGGTCTGTAAATGGGGACATGGAGTGCACCTGTGATTGCTTCTCACACAATTTACATCCCTGCATCTTTAGCGGCAG CCATTTGTGTGTGTGTGTGTGTGCTGTCGGATTAGATAATGAATAACCATTTTGAGATTGCCCCAGTTAAGACATGTGGT ATTATAAAGGAGCTTTACTTAGGCATGGTAGGTATGGATAGATGCTTTTGCCCACATACAACCTTTGTGAGCACACCATA AGTATGATCACAAACTGACATTGGATGATAGACATATTTCTATGCTGTATCTTTTTATAACCTATCTGTAGCTAATCAAG TATTACATTTGCCTATTCATTCTTGGCTATTGGTGAAGATTGTTAACCGTATTTCTTACTATATGGTTCAGGTGGACAGA GGTGTTACTTTGAGTGAGGCTCTACTTAGGCATGACAAGTGGCTTGAGAAGAAGGGAATAAAGAACGCCAACTTTGCTGT GGTTACATGGTCTAACTGGGATTGCCGTGTGATGCTTGAATCTGAGTGCCGATTCAAGAAAATACGAAAACCTCCTTATT TCAACCGGTAAATGTTGCATTATAGAAATGATGATCCATGTTTATCAGGATTTCGTTTCAACTAACTTTTGTTTATCTTC TTCTTAACTTGTGCTAGCTGGATCAACTTAAGGATTCCTTTCCGTGAGGTATTTGGTGCTGTGAAGTGTAATCTGAAGGA GGCTGTTGAGATTGCTGGCTTGGCTTGGCAGGGTCGTGCTCATTGTGGCCTTGATGATGCTAAAAATACTGCTCGCCTGC TGGCTCTGCTCATGCATAAGGGTTTCAAATTTTCCATTACCAATTCCATTATGTGGCAGACTTCTGATCGATCACTGATG TGGAAGCAGTCTCCTGAACAAATGAGTGTTTTCCCTCATTACCCCTACAAAGCAAAGGATATGAATACCCCCATCGTTCA GTACCACCCTTGCTGTTTCTGTGGGGTGAAAAGCAGTAGGGGCATGATCAGGAAGCCAGGGCCCAAGCATGGGAACCTTT TCTTTGGATGTGGAAATTGGACTGCAACTAGAGGTGCCCGCTGCCATTACTTTGAATGGATTTCTGCCTAA
CDS sequence (LotjaGi3g1v0315800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATAACCTGCGAGGCATCTCTGAAATGCCTCCAGGGAAAGGGATTCCCTAGCACTTTTCAGTGTAATGGGAGTTC TATTACAGAGCTAAAAAATGATCCTGGTACTCATCCAGCTGGGGATGTTTCTGAACCTAACCGCCGTCTTGGCAGTGAGT TTCTGGAGCCTTCCAATGAATTTCACAGTAAACCTACTTATCACCATGAGTACAACACCTGGACATCCTGCCATTTTCAC TCTCCCAAAGTGCACCAATGCCCAATGAATGCTTTTGAGAGCCACTTTTATCCTTATCCTGTCGAGAACCAGCTTCAGTA TGTTCCAGCTAATATGTTCGCTCAGAGTTACCCCCGGGAGCAATTTCAGGAATTTCAATATTTCGTGGTCATAGACTTCG AGGCTACCTGTGATAAGGATAAAAATCCCCACCCTCAAGAAATAATTGAGTTCCCATCTGTCATAGTGAGTAGTGTGACT GGCCAGCTGGAAGCATGTTTCCAAACATATGTGAGGCCTACCTGCAATCAGCATCTGACTGATTTCTGCAAGGATCTGAC TGGTATCCAGCAAATTCAGGTGGACAGAGGTGTTACTTTGAGTGAGGCTCTACTTAGGCATGACAAGTGGCTTGAGAAGA AGGGAATAAAGAACGCCAACTTTGCTGTGGTTACATGGTCTAACTGGGATTGCCGTGTGATGCTTGAATCTGAGTGCCGA TTCAAGAAAATACGAAAACCTCCTTATTTCAACCGCTGGATCAACTTAAGGATTCCTTTCCGTGAGGTATTTGGTGCTGT GAAGTGTAATCTGAAGGAGGCTGTTGAGATTGCTGGCTTGGCTTGGCAGGGTCGTGCTCATTGTGGCCTTGATGATGCTA AAAATACTGCTCGCCTGCTGGCTCTGCTCATGCATAAGGGTTTCAAATTTTCCATTACCAATTCCATTATGTGGCAGACT TCTGATCGATCACTGATGTGGAAGCAGTCTCCTGAACAAATGAGTGTTTTCCCTCATTACCCCTACAAAGCAAAGGATAT GAATACCCCCATCGTTCAGTACCACCCTTGCTGTTTCTGTGGGGTGAAAAGCAGTAGGGGCATGATCAGGAAGCCAGGGC CCAAGCATGGGAACCTTTTCTTTGGATGTGGAAATTGGACTGCAACTAGAGGTGCCCGCTGCCATTACTTTGAATGGATT TCTGCCTAA
Protein sequence (LotjaGi3g1v0315800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQITCEASLKCLQGKGFPSTFQCNGSSITELKNDPGTHPAGDVSEPNRRLGSEFLEPSNEFHSKPTYHHEYNTWTSCHFH SPKVHQCPMNAFESHFYPYPVENQLQYVPANMFAQSYPREQFQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVT GQLEACFQTYVRPTCNQHLTDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNANFAVVTWSNWDCRVMLESECR FKKIRKPPYFNRWINLRIPFREVFGAVKCNLKEAVEIAGLAWQGRAHCGLDDAKNTARLLALLMHKGFKFSITNSIMWQT SDRSLMWKQSPEQMSVFPHYPYKAKDMNTPIVQYHPCCFCGVKSSRGMIRKPGPKHGNLFFGCGNWTATRGARCHYFEWI SA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 396 | 395 | 7.0E-163 | – | |
PANTHER | 2 | 396 | 395 | 7.0E-163 | – | |
MobiDBLite | 28 | 47 | 20 | - | – | |
Gene3D | 118 | 343 | 226 | 9.5E-74 | ||
SUPERFAMILY | 125 | 314 | 190 | 2.58E-34 | ||
SMART | 127 | 309 | 183 | 2.0E-22 | ||
CDD | 128 | 304 | 177 | 2.61836E-68 | – | |
Pfam | 129 | 300 | 172 | 3.8E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0315800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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