Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0332600 |
| Transcript ID | LotjaGi3g1v0332600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein; TAIR: AT5G56140.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140; TrEMBL-Plants: tr|I1JVM0|I1JVM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0332600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70178215..70185363) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGTCTTCCTCCGGCGCCGGCAGGTACATGGCCTTCCCGCCGTCACCGTCAGCTCCTCCATCCCCTCACCTCTCCGG TCTTCGTTCTGCTGCCTCCTCTGCTCTTGCTGAACAGGACAAGTACCCCCCTCTATCTCTTTCTCTCTTCCTATTCCTCT AGGAGCTGGATCTTCACTCCAATTTTCACTTCCTGTGTTTCATTTCTCAAATTACTGTTAAAGTTTCTTCCTTTCTCTTC ATTTTTTTTGTCTTTGAACTTTGATTGACTGATTTCCATGCTTTGCTCTTGGTGGGTATTTTTTATTTATCTGGGTATTT GTTTGAATGGTCAAATGGGTCATGCACTCTTCACTTGTGTTTTCTGTAGTTGGGTTTGTTGACTGATTGCATAAAGGTTT GATCTTTATGACCTGATCTGCCTGTTGACTGAATTTGATCATGCAAGCAGATCTGTTGTGATGCAAATCTGATTGAAAAC TAATGTGGTAATTAGTTCTTGATGAACAATGGTTGGGCATTGATTCAGATTTCAATGCTTGTCAAATTTGATAGTGTATG ATTGTTGTGTTTGAGTCCATTTGGTCATTTGATTGTTTTAGCTGACTGATCATTGTGGGAAACAAGTTGATCTTGTTGTT GCTGTGCTTTTCTCCTGAGAAATGAGAACTTGTAGATGAATTGACTTCATTGCTAATTCATCATATGTCAAAGCACTATC CTTGCCCTTTTGTAGTTTCTGGTCATGATCAGACTATTTTTGCTAATTCTTGGTTTACTACTATGTATGTGGATGTCGAT ACTCAGAATTTTATTACATTTACATTTGCTCTTGTGATTAACGAATGGCTACAATGTCGTACTCCAATTGTTTTGTTTTC CTTTATTTTCAGGTATTTAACTGAGTTATTGGGAGAACGTCATATTCTTGGTCCCTTCATGGCTGTACTTCCACACTGCT ATCGATTGATCAATCAAGGTAAGATTCGTTTCTCTAAACAGAGGTGAATTAGCCACTCCCCCCATCTTCTCATTCTTTAG TTTTTGTATGATAGAATCAAATGGCTTAACTCTTGGGCTCTTGCGCCGTAAGTTTCATTTTTTACATTTGATTTTTTTTA TCATTTTTCTTTGTTTCATGTAAGTGTTGTATATCTTGTCTTATCCATGAGCAAACCCCTCTCCTTACAAGTGAGATCTT CAAACCTCTCCTGAGGTGTAAATTTGAAGAATATATTATGAGAGCCGCACTTACCCATGTGGGCCCCCCATCTCCCATCA GTGTGCTGGAGACGATTCTTTCTGTATCTTCGACTTTATCTTCTCCCTCTGACAGAACAAATCTCTTATCTCCATATTTA CTTTCTAGCAGGTCTCTCAACTATTATCTTAAAATAAGACATTTCTTCTGCTCTTTGCTACCATAGCCACTTCTACATCA AACTTGCAACCATTCTTATTGTTTGAAAAGATCTCAGATCCCTCATACTTGTGACTGGGAAGAGTCTCTAAGGAGAAGTT GCATCTTGATCTGAGCTTCTTCCCATATATAATATGAAGAGCTAGATTCTTAACTGCTTTCAACGTATAGTCTAAAAAAG TGAGGGAAATGATGAAGGCTTAAGATAACTACGCGGTTATTAGTGACGTAAGTTTAGGATTTTTTAAAAATGTTATTGAG TGTACTTTTTCATAAGACCAGAAGATATTTTAAGTTTTTAGTTGAATGATTGGATTATAGTTTTGGATAATGAAGAAGGA AAAATAAAGAAGAAAGGCTTAGAATTATGATATGATGCAAAAGACATAACACTAACCCTTATTTACCATGTCAAAATTGT GAGTCACCTCATGTCGTAGGATTTGGCGTTTTACGAGTTTTGCATCCATCTGCAATTACATTTGCGACCAAGTAAGATTG TTAGATCGTGTGATCTGCGTTTTTTCCGAGCTCATGACCTATGACTCTGTGTTTGACTGGGTAGGTTTCTCGACCTGCGT TGAAAAAACCCTTGATTCCTCCCCAAATCATACCTAACCTGACCACTCTTCTCATTTGTTCATTCCATCAATTCTGTCTC TCTTCGTGCAAGTTTTTCTGAGAGGCGCTTTCTGAATCTCTCCCAATCACGCACTAAACTCCCCATCTCTGCTGTCTCGG CGCTTCAGCTTGAAGCTTTTGCACTACTGTCAACACTCTCCACCATCTTTGATCTCTCTGTTCTGATTTTTCCTTGGCCT TCAAACCCCTCTCTCTCTGCGGCTTCTGCTAGGTTCCTTTGCTGCCCGTCTTTGTCCAAGTGGCGGAGGTGCAGGAGTAA GGGTCTAAGGGAGAAAAAGGTAGAAGGCGGCTGTGTGTTTTGTCTCCTAGGTTATAAAAATTGAATTATCAATAATACCC CAACTACTAGAACTGAAAAATCAATAATACCCCCAACTGATAGAACTGATAAACAAAAAAATGCCATCAACTAATAGCTC CAACATTCTAATTGCTAGGGCAATTATGACTTTATGAACCGTCTTCTCTTTCAAAAAACCCTAATCCCTGTAGCAGCAAA ATAGCGACGGCTGCGATTTTGGCCGATAAAGCGGCTGAGACTGCCGTGATCGCTACCTCCGCTCCACCCCGCACCACTGC GATTGCACTGCTTTCGCGCGCCATTGACAAGTATGATATTAGTTATAATAATTTTTTAATTAAAATACAGGTCTTACAGG CTGTGTTATTTAAGGTTTTTTACCCCTCCCAATCCTAGGTAGATACCGAACTCCTAATTCTAATCAAATACGGAAAATAA TCAGGATAAGTACTCAACACTTGATTGTAATTAAGTACGGTATGAATGTTAAAAACTTGGCTGAAAAAGTTCTGGTGGTG GGCGAGAAGTTTTTGAATGACTGGGAAAAGTGCCTGATTAGGCTGTTATGGTTGGGACTCGGGAGAATTCGTGATGGATA TTTTCATGGTGGTAAGGGCTTGCTGAAGGTGTCACAGCGGCAGAGGGAAAGAAGGGCCACTTAAGAAGAGAGATTTTGGG TGATAGTGACATTATTGTAGTAAAATCCCAAACATTAGGAAACTTAGCAGCAGAATAGTGACTAAAAGAGTGATATAAGG TAGGAGGAAAGGGAAGAAATATCAACTCCTTATTATTGTTAGATTTTTATTATATGATAAAGAAGGCAAAACATTAACCC TTATTTTCCAATACTACGCTCATAATCCTAATCAAATATGTAAACTAATTTATGATAATCACTTCACTTGACTGCAGCAG TAAGTAACCTGCATTAATTTATTTTTTGAAATCGGTTAATGTGCAGACTGCAGAATGCTTTATACTAGAAAAGTAATAGA AGAGGATAAATATACATATTTTCCACGTTGTTTTACAAAATTGCACTGAGTTGTGAAGAGTTTTATGCAGTTACCGTTTA TAGATGTGTGTGCATATTTGATCACTTATTAACTTTTGCATTTGTTGATAAATCTTTGAGTTTGTTTAGACTGAGAAGTG TTGAGTATGTATCATACATAGGATTCTGAAGCAGTGGTGTGACTGGGAATTAGTTTGAAGTATTTGATGAGATTTTTTTA TTAAGGGAGGGGGGGTGGAGATGGGTTTTAAGTTAAGGAAACATGTTAGCTTGTTGTTTCCTCTACATGGTTTAGCAGAA ACATTTTCACCAGCTATAACATAATGTAGTTATTTAGAAGGGGTGAAGATTGTAAATGGAATAATATTGAAAGTCCAGGT CAAGAACCCTAGCTTCCAACCTTACTTTACGGTTGTGTTTGATGGAAAAACTGCTTATTTTCTTCTAAGGGCCTATTAAA AGGTCTCAACAAACATAAAATCATAACCATTCATCATATAAGGCTTAGTTTAGTTAAATCATAGTCAGTCAAGTTCTCAA AATCAGATGACTTTTTAATTTACTCAATAAAACTAGCGACAGGGTGTCAATATTTTGGAGTCTACCAAAAGTTTATGACA CGAGTGCTCTAAATTTGAAGAAAAAACTTGTAAGTTCTTATTGGAGTGAATTAATTGGTGCTGAAACTAAGGCACTTAAC GATCATGGTAAGTTGTCTCATTCACCTTATAATCCATGATCCTTTTCTATTATAATGAGTGTGTTTGGATGGAGGAGATT TGATAGAAAGGGAGGACGAATGAAGGATGATTCAAGTTGACATTTACCTCTTTTGCAATTTTTTTTGTTATGTGAAGAAG AAACAGGGATTTCGTGTAGCACTAAAACCTTCCTGTATTAATATCAATGAACATTTTAGAGTTCTGTGAGGATTTTAACA TCCACAAAGAGAAGGAAACTACTACTTAATCCCTCATTCTCTTAAAGAAACTATAACTTAATACCTCGTTCTCTTCCCTA TCTTTCCCCACATTTTCTTTCTCTTTCCCCCCAGAACTTCCAGTTGGATAGTAATTGCATGGTTATTATAATCTTTGTGA ATTGACTAAGTAAATGTTTTTATAATACTTCCTTTTTTACTTGAGTGGAATGTTTTATTGATAAATCAGTGGTTAAGCAA TTGACAATATTAGATGCTATTAGTCTTTTTCTTATCTGAACTTGATATACCAATAGAGGGTTCATTCATGTTCTTTCTAT GGAGTTAGTTTGTGTGTAAAGGTTCTAGGATTTGAGTTGTTAGTTTTTCTTATATGAAAGTAATGAAAGGAAAATTTTCC AGCTGTTGTATGTGATTGCTGCTTTATGGTATTGTTATGGTTTGATATAATTGTTTATACTCTTGAGAGTTTCTATGTAT AAACAAGCCCTGAAGTTTCAATGGAAGTACATGTTTTATTTTTATTATGTTGGAAGTACATGTTTCAATGGTTTGCTAAC CAAATCTTTTTGAAGTGACTTTTCTGTTAATGTGAAATGTGAATGTCTACCTATTTAAATATTTACAAGATGACACTTGA CTGTATTTGTTTTCTTTACTATTAGAGTACTACCATAAAAAGTTGGAACATATCTAATTGAGATAGCATTTATTTTTTAC TGACTCAGCAAACATCCGTGTTGTCTATCGATTATATAGTGACTGCTAACTTGTTAACAAATGCTGACTGGTACATGTTA TTCTTGAAAATTGACATTTTTGGAGCAGAAATTTTGCGTGTAACCACGCTGTTGGGGAATGCATCAGTTTTAGGTCAAAG TAGGCTTGAACATGCGAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCAGATGTGAACGGTTGGGCATCAA GATTTCAATCAGAAGTATGGATACTAACCATTAACATAACTTCATTTCGTTCTAATTCTGTATTTTAGAAGTATTTCTGA CAATTTTTGCTAACTCATGACATTTATTCGAGTGATTGTAGTTCTAATTGTTTTTGGCAGGTAGTGAAAAGCTAACAACA GGCCCTGACAATTAATCTATAGCTTAGTTTCTACAGGAACCCTGATTATGGATCTAATGTTGATTTCTTCTCTGTATTAA GATAAAGCAGATGTCAATACTTGATGGCATTGCAATTTTCTACAAAATTACAGATGTGATGAATAGTGTCAGATGGATAA ATCTGAATGCAATCACATGGGAATCTTGATTTATTTATGGTAGAAATAGAATGCTAACACTAGCTACATGAAGTGTTTGC CTGTGAAATGTGAGACAGGAAGTTCTATGAGGATTGAGGAACTAACTTGTTGGCTAAGTTGCTCAAATCAGTCTTATTTT CCTAATACCTTTCTGGTTTGAGTTCAGCTGTAATTCCAAACTTCAGTTAACACATTATTTTCTGAGACCTTGATCCTCTT TGATTGACATAGTCAGGACTCAGGATATGTTTGTACACTTTCCTTGTTATGTGTTTTGAACTTCTTTTGAATTTGAGAAG CCAGTGTATCCCTTTTTGGTGATCTCTGTGGCCTTTGATAGAGTAATAAATTTAATGTTCATTTTCATGCCAATAAATAG ACTGTCATATCTGTAAATGCAATTGACATTGGAATGAAAACATGCAGATGCCAAGTTTGTTACAGTCCTCGGCAACACCA AGTTGGCTGAGTCCACAAGGTAGCTCATCCGGTCTTGTTGTTAAAAAGACTATGAGAGTCGACATACCTGTGGAAGTATA TCCTAATGTATGAATGATCATATCCTGCTTCTGTATATACTCAACTATTTTCCATATCCAGAAATAATATAATATCAACA TTATTTTATTGCAGTTTAACTTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAACTCTCTAAAGCGCGTAGAAGCAAGTACT GATTGTCGTGTCTTGATCAGGGGCCGAGGTAGCATAAAGGATCCAGCTAAGGTAAGAATAAAAATATGATTTTTAATTTA ATTTGTAGCAAGTCTACATGATCATTTTGATGAAGATAAAGTTACTGTACTGTAACCTTAAAAGCTGTTTGACATTGTTA TTGTACTGTGTTGCACATTATCAGATCAAAGTGTTTACCCTATCCTTGGGTGAATGTTTTTCTATTTATTTATTCAGAGA TCTATGACTTTCTTCTGGTTCTTGTCAGAACAATTATATTAATTTGTATTGCATTCTATATTTTCTGAATGTATGAGCGG TAATGCTTGTGGTTTATCCAATCAGCTCAGTGAATCCAATGTTATTGCCTATATTGCTTAATGTTCAGTATATTTTAGTT GGAAATTTAGGTTCTAGTTAACAAATTTTAATCTAATTTGTAGGAGGAAATGATGAGAGGGAAACCTGGGTATGAGCATC TGAATGAACCTCTCCATGTTCTAGTTGAAGCAGAATTTCCAGCTGAAATCATAGATGCCCGCTTGATGCAAGCACGTGAA ATACTTGAAGATTTGCTTAAACCTGTGGTATGTTCTTGTGCATTCAATTAAGATTTGGCAGCATACGCAACTTCATAGGG ATACTGTTTGTGCTAACTATTTGAAGTTTTATCTTCCAGGACGAATCTCAGGACTACTACAAGAAGCAGCAGCTTCGGGA ACTAGCACTGCTCAATGGCACTCTTCGCGAGGAGGGTTCTCCTATGTCTGGTTCTGTTTCACCCTTTCACAACAGCCTTG GTATGAAAAGGGCCAAGACCAGGGGGTAA
CDS sequence (LotjaGi3g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTACTTCCACACTGCTATCGATTGATCAATCAAGAAATTTTGCGTGTAACCACGCTGTTGGGGAATGCATCAGT TTTAGGTCAAAGTAGGCTTGAACATGCGAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCAGATGTGAACG GTTGGGCATCAAGATTTCAATCAGAAATGCCAAGTTTGTTACAGTCCTCGGCAACACCAAGTTGGCTGAGTCCACAAGGT AGCTCATCCGGTCTTGTTGTTAAAAAGACTATGAGAGTCGACATACCTGTGGAAGTATATCCTAATTTTAACTTTGTTGG TCGCCTCCTAGGCCCTAGAGGAAACTCTCTAAAGCGCGTAGAAGCAAGTACTGATTGTCGTGTCTTGATCAGGGGCCGAG GTAGCATAAAGGATCCAGCTAAGGAGGAAATGATGAGAGGGAAACCTGGGTATGAGCATCTGAATGAACCTCTCCATGTT CTAGTTGAAGCAGAATTTCCAGCTGAAATCATAGATGCCCGCTTGATGCAAGCACGTGAAATACTTGAAGATTTGCTTAA ACCTGTGGACGAATCTCAGGACTACTACAAGAAGCAGCAGCTTCGGGAACTAGCACTGCTCAATGGCACTCTTCGCGAGG AGGGTTCTCCTATGTCTGGTTCTGTTTCACCCTTTCACAACAGCCTTGGTATGAAAAGGGCCAAGACCAGGGGGTAA
Protein sequence (LotjaGi3g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLATGGIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQG SSSGLVVKKTMRVDIPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHV LVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 238 | 238 | 4.3E-142 | – | |
| PANTHER | 1 | 238 | 238 | 4.3E-142 | – | |
| SMART | 87 | 183 | 97 | 4.7E-5 | ||
| CDD | 90 | 212 | 123 | 4.93938E-58 | – | |
| SUPERFAMILY | 92 | 212 | 121 | 2.53E-32 | ||
| MobiDBLite | 212 | 238 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0332600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…