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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR036612
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We have found 70 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.561s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. KRR1 small subunit processome component; TAIR: AT5G08420.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|O74777|KRR1_SCHPO KRR1 small subunit processome component homolog; TrEMBL-Plants: tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit processome component; Found in the gene: LotjaGi1g1v0058400 LjG1.1_chr1 8151283 8155580 -
n.a. KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800 LjG1.1_chr1 16043361 16049051 +
n.a. KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800 LjG1.1_chr1 16043674 16046759 +
n.a. KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800 LjG1.1_chr1 16043674 16046759 +
n.a. KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800 LjG1.1_chr1 16043674 16046759 +
n.a. KH domain-containing protein; TAIR: AT5G53060.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|K7KUU1|K7KUU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288000 LjG1.1_chr1 69851773 69858396 -
n.a. Far upstream element-binding protein; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2; TrEMBL-Plants: tr|A0A151TTJ8|A0A151TTJ8_CAJCA Far upstream element-binding protein 1; Found in the gene: LotjaGi1g1v0366300 LjG1.1_chr1 84409233 84415724 -
n.a. KH domain-containing protein family; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7AXD5|V7AXD5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0411200 LjG1.1_chr1 90182409 90187993 +
n.a. KH domain-containing family protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1N3C0|I1N3C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0459900 LjG1.1_chr1 96345117 96351847 -
n.a. KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|A0A0B2S8I8|A0A0B2S8I8_GLYSO KH domain-containing protein; Found in the gene: LotjaGi1g1v0459900 LjG1.1_chr1 96345898 96350415 -
n.a. RNA-binding KH domain protein; TAIR: AT5G15270.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q0VCU0|PCBP4_BOVIN Poly(rC)-binding protein 4; TrEMBL-Plants: tr|A0A0S3RSA7|A0A0S3RSA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0488800 LjG1.1_chr1 100175854 100185921 +
n.a. RNA-binding KH domain protein; TAIR: AT5G15270.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|A0A0R0IMX4|A0A0R0IMX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0488800 LjG1.1_chr1 100175854 100185921 +
n.a. Protein RIK; TAIR: AT3G29390.1 RS2-interacting KH protein; Swiss-Prot: sp|Q9LIA4|RIK_ARATH Protein RIK; TrEMBL-Plants: tr|I1N4J7|I1N4J7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0512300 LjG1.1_chr1 103400161 103414019 +
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7L1J6|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200 LjG1.1_chr1 120577214 120603712 -
n.a. RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1N9N6|I1N9N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0712300 LjG1.1_chr1 128018723 128024702 -
n.a. Zinc finger CCCH domain-containing protein; TAIR: AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein; Swiss-Prot: sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14; TrEMBL-Plants: tr|I3T0H6|I3T0H6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0726000 LjG1.1_chr1 129709502 129713099 +
n.a. Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp|Q9ZVT7|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr|B7FL19|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200 LjG1.1_chr1 130290398 130295677 +
n.a. RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1NCB1|I1NCB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782800 LjG1.1_chr1 135593478 135600755 +
n.a. RNA-binding KH domain-containing protein; TAIR: AT3G04610.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1NCB1|I1NCB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782800 LjG1.1_chr1 135593893 135599866 +
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
n.a. KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1N665|I1N665_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400 LjG1.1_chr2 72835687 72846139 +
n.a. KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1N665|I1N665_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400 LjG1.1_chr2 72835687 72846239 +
n.a. KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|A0A1J7IC78|A0A1J7IC78_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400 LjG1.1_chr2 72836294 72838693 +
n.a. Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600 LjG1.1_chr2 77316205 77320980 -
n.a. Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600 LjG1.1_chr2 77317080 77320792 -
n.a. RNA-binding KH domain protein; TAIR: AT2G22600.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7CJP6|V7CJP6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328700 LjG1.1_chr2 80410040 80415900 +
n.a. Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E5|K7K5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200 LjG1.1_chr2 94106815 94117028 +
n.a. Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E5|K7K5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200 LjG1.1_chr2 94106885 94115633 +
n.a. Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E4|K7K5E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200 LjG1.1_chr2 94106890 94115516 +
n.a. RNA-binding KH domain protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E4|K7K5E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200 LjG1.1_chr2 94106894 94115600 +
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|A0A0B2RX31|A0A0B2RX31_GLYSO Far upstream element-binding protein 2; Found in the gene: LotjaGi2g1v0456300_LC LjG1.1_chr2 94939286 94939915 +
n.a. KH domain-containing family protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 LjG1.1_chr3 5489904 5496641 -
n.a. KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 LjG1.1_chr3 5490836 5494730 -
n.a. KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 LjG1.1_chr3 5490836 5494769 -
n.a. KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 LjG1.1_chr3 5490836 5495033 -
n.a. KH domain-containing protein; TAIR: AT3G08620.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620; TrEMBL-Plants: tr|I1L6X0|I1L6X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300 LjG1.1_chr3 5490836 5496357 -
n.a. KH domain-containing protein; TAIR: AT5G56140.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140; TrEMBL-Plants: tr|G7J0G1|G7J0G1_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi3g1v0332600 LjG1.1_chr3 70176108 70185515 -
n.a. KH domain-containing protein; TAIR: AT5G56140.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140; TrEMBL-Plants: tr|I1JVM0|I1JVM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0332600 LjG1.1_chr3 70178215 70185363 -
n.a. KH domain-containing protein family; TAIR: AT5G64390.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|F4KDN0|HEN4_ARATH KH domain-containing protein HEN4; TrEMBL-Plants: tr|V7B896|V7B896_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0345500 LjG1.1_chr3 72315340 72324758 -
n.a. RNA-binding protein 3; TAIR: AT5G51300.1 splicing factor-like protein; Swiss-Prot: sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein; TrEMBL-Plants: tr|I1L5P7|I1L5P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552600 LjG1.1_chr3 97021888 97024198 -
n.a. RNA-binding KH domain protein; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|I1KL57|I1KL57_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040000 LjG1.1_chr4 4736638 4743376 +
n.a. Poly(RC)-binding-like protein; TAIR: AT4G26000.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|A0A151T5F8|A0A151T5F8_CAJCA Poly(RC)-binding protein 3; Found in the gene: LotjaGi4g1v0305900 LjG1.1_chr4 68178157 68182616 -
n.a. KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700 LjG1.1_chr4 73934559 73943518 +
n.a. KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700 LjG1.1_chr4 73934562 73944082 +
n.a. KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700 LjG1.1_chr4 73934897 73941157 +
n.a. Exonuclease 3'-5' domain-containing protein 1; TAIR: AT2G25910.1 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; Swiss-Prot: sp|Q8CDF7|EXD1_MOUSE piRNA biogenesis protein EXD1; TrEMBL-Plants: tr|I1MXE7|I1MXE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039700 LjG1.1_chr5 6681290 6695561 -
n.a. Far upstream element-binding protein; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1; TrEMBL-Plants: tr|I1M903|I1M903_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0040300 LjG1.1_chr5 6818844 6824243 -
n.a. RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|A0A0L9TX81|A0A0L9TX81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0177100 LjG1.1_chr5 45118722 45124307 +
n.a. RNA-binding KH domain protein; TAIR: AT5G04430.2 binding to TOMV RNA 1L (long form); Swiss-Prot: sp|Q9LZ82|BTR1_ARATH Protein BTR1; TrEMBL-Plants: tr|A0A151T0U1|A0A151T0U1_CAJCA RNA-binding protein Nova-1; Found in the gene: LotjaGi5g1v0253700 LjG1.1_chr5 56257442 56266207 +