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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004087
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 120 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.561s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0213029.1
n.a. KH domain-containing protein [Medicago truncatula] gi|357491547|ref|XP_003616061.1| chr0 107501118 107504769 +
2 domain predictions
1 GO term
Lj0g3v0243119.1
n.a. PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like [Cucumis sativus] gi|449463577|ref|XP_004149510.1| chr0 126080488 126082048 -
2 domain predictions
1 GO term
Lj0g3v0317579.1
n.a. PREDICTED: far upstream element-binding protein 2-like [Cicer arietinum] gi|502132673|ref|XP_004501474.1| chr0 165918002 165918565 -
2 domain predictions
1 GO term
Lj1g3v0986640.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356516077|ref|XP_003526723.1| chr1 12602723 12609074 -
2 domain predictions
1 GO term
Lj1g3v1785860.1
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr1 20869078 20874965 -
2 domain predictions
1 GO term
Lj1g3v2095550.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1| chr1 24813269 24818222 -
2 domain predictions
1 GO term
Lj1g3v2095550.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1| chr1 24814544 24818222 -
2 domain predictions
1 GO term
Lj1g3v2535040.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356532119|ref|XP_003534621.1| chr1 29127788 29133588 -
2 domain predictions
1 GO term
Lj1g3v2546210.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1| chr1 29297717 29304255 -
2 domain predictions
1 GO term
Lj1g3v2546210.2
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1| chr1 29297717 29304255 -
2 domain predictions
1 GO term
Lj1g3v2862760.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1| chr1 32464347 32473141 +
2 domain predictions
1 GO term
Lj1g3v2862760.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1| chr1 32464347 32473141 +
2 domain predictions
1 GO term
Lj1g3v2979180.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356531744|ref|XP_003534436.1| chr1 33829686 33833274 +
2 domain predictions
1 GO term
Lj1g3v3979350.1
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47298821 -
2 domain predictions
1 GO term
Lj1g3v3979350.2
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47317513 -
2 domain predictions
1 GO term
Lj1g3v4479240.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1| chr1 52420242 52426084 +
2 domain predictions
1 GO term
Lj1g3v4479240.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1| chr1 52420242 52426084 +
2 domain predictions
1 GO term
Lj1g3v4995150.1
n.a. PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1| chr1 60656664 60659153 -
2 domain predictions
1 GO term
Lj1g3v4997240.1
n.a. PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like [Glycine max] gi|356573119|ref|XP_003554712.1| chr1 60703151 60709668 +
2 domain predictions
1 GO term
Lj1g3v4997250.1
n.a. PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1| chr1 60703152 60709961 +
2 domain predictions
1 GO term
Lj2g3v1068380.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572762|ref|XP_003554535.1| chr2 16990409 16997239 +
2 domain predictions
1 GO term
Lj2g3v1455300.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502162652|ref|XP_004512570.1| chr2 23001170 23006538 +
2 domain predictions
1 GO term
Lj2g3v2124230.1
n.a. Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1| chr2 31881782 31889877 +
2 domain predictions
1 GO term
Lj2g3v2124230.2
n.a. Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1| chr2 31881782 31889877 +
2 domain predictions
1 GO term
Lj2g3v2448180.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356569995|ref|XP_003553178.1| chr2 34573883 34577148 +
2 domain predictions
1 GO term
Lj3g3v0271550.1
n.a. Activating signal cointegrator 1 complex subunit [Medicago truncatula] gi|357454839|ref|XP_003597700.1| chr3 1607970 1613370 -
2 domain predictions
1 GO term
Lj3g3v0860600.1
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677355 10684218 +
2 domain predictions
1 GO term
Lj3g3v0860600.2
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677493 10684218 +
2 domain predictions
1 GO term
Lj3g3v0860600.3
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677493 10684432 +
2 domain predictions
1 GO term
Lj3g3v0860600.4
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10678495 10684218 +
2 domain predictions
1 GO term
Lj3g3v1953290.1
n.a. KH domain-containing protein [Medicago truncatula] gi|357456069|ref|XP_003598315.1| chr3 25061657 25069245 -
2 domain predictions
1 GO term
Lj3g3v2057520.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502148055|ref|XP_004507020.1| chr3 26465468 26469277 -
2 domain predictions
1 GO term
Lj3g3v3725550.1
n.a. PREDICTED: branchpoint-bridging protein-like isoform X1 [Cicer arietinum] gi|502169018|ref|XP_004514517.1| chr3 45131568 45134991 -
2 domain predictions
1 GO term
Lj4g3v0385920.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356519471|ref|XP_003528396.1| chr4 5012463 5016712 +
2 domain predictions
1 GO term
Lj4g3v2139160.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502150323|ref|XP_004507898.1| chr4 29385503 29389692 -
2 domain predictions
1 GO term
Lj4g3v2468420.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr4 33751147 33760044 +
2 domain predictions
1 GO term
Lj4g3v2468420.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr4 33751147 33760044 +
2 domain predictions
1 GO term
Lj5g3v0348750.1
n.a. PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1| chr5 3392382 3399872 -
2 domain predictions
1 GO term
Lj5g3v0380090.1
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3552090 3555971 -
2 domain predictions
1 GO term
Lj5g3v0380090.2
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3552090 3556558 -
2 domain predictions
1 GO term
Lj5g3v0380090.3
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3554674 3556558 -
2 domain predictions
1 GO term
Lj5g3v0921030.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 14-like [Glycine max] gi|356504859|ref|XP_003521212.1| chr5 13644321 13651740 +
2 domain predictions
1 GO term
Lj5g3v1027080.1
n.a. PREDICTED: poly(rC)-binding protein 1-like [Glycine max] gi|356536806|ref|XP_003536925.1| chr5 17028380 17033868 +
2 domain predictions
1 GO term
Lj5g3v1699070.1
n.a. PREDICTED: RNA-binding protein Nova-2-like isoform X1 [Cicer arietinum] gi|502118184|ref|XP_004496141.1| chr5 24568657 24575554 -
2 domain predictions
1 GO term
Lj5g3v1699070.2
n.a. PREDICTED: RNA-binding protein Nova-1-like [Glycine max] gi|356535513|ref|XP_003536289.1| chr5 24568657 24575278 -
2 domain predictions
1 GO term
Lj5g3v1699070.3
n.a. PREDICTED: RNA-binding protein Nova-2-like isoform X1 [Cicer arietinum] gi|502118184|ref|XP_004496141.1| chr5 24568657 24575278 -
2 domain predictions
1 GO term
Lj5g3v1806970.1
n.a. PREDICTED: RNA-binding protein pno1-like [Glycine max] gi|356566309|ref|XP_003551375.1| chr5 25739414 25741547 -
2 domain predictions
1 GO term
Lj5g3v2300300.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502121682|ref|XP_004497409.1| chr5 34000150 34006798 +
2 domain predictions
1 GO term
Lj6g3v0670130.1
n.a. PREDICTED: RNA-binding protein pno1-like [Glycine max] gi|356566309|ref|XP_003551375.1| chr6 6657603 6659185 -
2 domain predictions
1 GO term
Lj6g3v1331880.1
n.a. n.a. chr6 15846128 15865837 +
2 domain predictions
1 GO term