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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343600 |
| Transcript ID | LotjaGi3g1v0343600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT2G24630.1 Glycosyl transferase family 2 protein; Swiss-Prot: sp|Q69L19|CSLC2_ORYSJ Probable xyloglucan glycosyltransferase 2; TrEMBL-Plants: tr|A0A0B2S4W1|A0A0B2S4W1_GLYSO Putative xyloglucan glycosyltransferase 8; Found in the gene: LotjaGi3g1v0343600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72025223..72027593) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGTGAAGTAACTGGAGGTAGTAGTTGATTACATGATGCCATAGGGATTTACAACATTTACTCTTTCCCGTTTATGA TCATGAATACTTTGGCATTAACTGCAGGTATATGAACAATCTATTTCTGCAGTCTGCCAACTTGATTGGCCAAAAGATCG TTTGCTTATTCAAGTTTTGGATGACTCTGATGATGAAGGCATACAATGGTTAATCAAGGGAGAGGTCTCAAAGTGGAGTC AGAGAGGTTCCAATATCATCTACCGTCATAGGCTGTTAAGAACTGGTTACAAAGCAGGAAATCTCAAGTCTGCAATGAGC TGCGATTACGTGAAGGATTACGAGTTTGTTGCGATTTTCGATGCTGATTTCCAACCGAATCCAGATTTCCTCAAGCAAAC GGTCCCACATTTTAAGGTGGCTAATTTACATGTTTCTTCCTTGTTATTTCATAATCTCGTTTCGCATTCTCATTCTTAAG TTTGTTTTGCAGGGCGATCCTGAGCTGGCGTTGGTTCAGGCTAGGTGGGCTTTTGTAAACAAGGAGGAGAACTTGCTAAC ACGTCTCCAGAATATTAATTTGTGCTTCCACTTTGAGGTTGAGCAGCAGGTTAATGGGGTTTTCCTGAACTTCTTTGGTT TTAATGGAACTGCTGGTGTTTGGAGAATAAAAGCACTGGAAGAATCTGGTGGATGGCTTGAAAGAACTACAGTAGAAGAC ATGGATATAGCAGTCCGGGCCCATCTCAATGGTTGGAAATTTATCTATCTCAACGATGTAAAGGTAACCCCTTTTTTTAT ATATCGCAGTCCAAGCTTATCTTAGAGTATCTACAGCCTACAATGGCAGTTCTAGTATGCATTAATTTTGAAGATTAGGA TGAACTTGATTTGGGTGAAGTAATTATCTGCAGACTTCAGTTATTAAGAGACACTTTTCACTAAATTTTTGGGTTGAAGT AATTATCTGCAGACTTCAGTTATTGAGAGACATTTTTCACTAATTTTTTGGGTTGATGTACTAGTGACATTTTTCACTAT GTTAAATATAAGTGGCAATTAGGTTGATGTACTAGTGACACTTCTTTCAGGTGCTTTGTGAGCTTCCTGAATCATATGAA GCTTATAGGAAACAACAACATCGATGGCATTCTGGTCCTATGCAACTCTTTCGTTTGTGCCTTCCAGCCATCTTAACTTC TAAGGTTAAGTATTTTCCTTTATCAAGTGTTGCACTATTTTGGAGGAAAACACAATCTAAACATGTTGTGGTGCCATGAT GTTGCAGATTGGATTCTGGAAGAAAACAAACCTTATATTTCTATTCTTTCTGCTTAGAAAGCTAATCCTCCCATTCTATT CTTTCACATTATTCTGCATCATTCTTCCTTTGACGATGTTCGTCCCAGAAGCTGAGCTTCCCATCTGGGTTATTTGTTAC ATTCCTGTATTCATGTCATTCTTGAACATTCTTCCTGCCCCAAAATCCTTCCCCTTCATTGTTCCTTACCTCCTGTTTGA GAACACCATGTCGGTAACCAAATTCAATGCCATGGTATCCGGTCTGTTCCAGCTGGGAAGCTCATACGAATGGATCGTTA CCAAAAAATCCGGTCGCTCGTCAGAGCCTGACCTATTGGCTGCTGAAGAACGCGATTCGAAGGCCATGAGTCTCCAACTT CACAGAGGAAGTTCTGATAGTGGACTTTCTGAGCTTAACAAAATAAAGGAATGCCAAGTAACTGTTCCTAGACCTACGGC AAAGAAAACGAACAAGATATACAAGAAAGAGCTTGCACTTGCATTCTTACTGCTAACTGCTGCAGTTAGGAGCCTATTAT CAGCACAGGGGATGCACTTCTACTACTTGTTATTTCAAGGTGTGTCATTCCTCCTTGTAGGTCTGGATTTAATTGGTGAA CAGATGAGCTAGAAGATCAGAAAAGGATGTGTAAAAATAGAAAATTGATTGTTATAAAGTTCAATAATTGAAGAAGCCAA CAAATTTGAATGCTGCAAGATTGTTGGTTTTGGAAGTTACATTCAAGGTTCGTGAATATGGCTCAGGTAAAGTACTGAAA GCTACACTGGGTCAAATCATAAATAAGTTTATTATTCTTGAAGTGTCACTATAGAAATTTTTCTGGTTTCTTGTCCTTTG ATTGTTGCAGTACAAATGTTTTTCTTTTCCTTTTCAATTTTCTGTAAGATAACCCCATTCATTTTATCTCAATATCACAC CCTGTTACTCACACCACATATGGTTCATATGTACCTGTTGAATGACATTGATGTATTACTACTTCCAGCAAAAAGCTGTT CACTTCACATGTGAAGAATCTGAAAGGTTGTTGAGCCAAATTTCACATACA
CDS sequence (LotjaGi3g1v0343600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTGCGATTACGTGAAGGATTACGAGTTTGTTGCGATTTTCGATGCTGATTTCCAACCGAATCCAGATTTCCTCAA GCAAACGGTCCCACATTTTAAGGGCGATCCTGAGCTGGCGTTGGTTCAGGCTAGGTGGGCTTTTGTAAACAAGGAGGAGA ACTTGCTAACACGTCTCCAGAATATTAATTTGTGCTTCCACTTTGAGGTTGAGCAGCAGGTTAATGGGGTTTTCCTGAAC TTCTTTGGTTTTAATGGAACTGCTGGTGTTTGGAGAATAAAAGCACTGGAAGAATCTGGTGGATGGCTTGAAAGAACTAC AGTAGAAGACATGGATATAGCAGTCCGGGCCCATCTCAATGGTTGGAAATTTATCTATCTCAACGATGTAAAGGTGCTTT GTGAGCTTCCTGAATCATATGAAGCTTATAGGAAACAACAACATCGATGGCATTCTGGTCCTATGCAACTCTTTCGTTTG TGCCTTCCAGCCATCTTAACTTCTAAGATTGGATTCTGGAAGAAAACAAACCTTATATTTCTATTCTTTCTGCTTAGAAA GCTAATCCTCCCATTCTATTCTTTCACATTATTCTGCATCATTCTTCCTTTGACGATGTTCGTCCCAGAAGCTGAGCTTC CCATCTGGGTTATTTGTTACATTCCTGTATTCATGTCATTCTTGAACATTCTTCCTGCCCCAAAATCCTTCCCCTTCATT GTTCCTTACCTCCTGTTTGAGAACACCATGTCGGTAACCAAATTCAATGCCATGGTATCCGGTCTGTTCCAGCTGGGAAG CTCATACGAATGGATCGTTACCAAAAAATCCGGTCGCTCGTCAGAGCCTGACCTATTGGCTGCTGAAGAACGCGATTCGA AGGCCATGAGTCTCCAACTTCACAGAGGAAGTTCTGATAGTGGACTTTCTGAGCTTAACAAAATAAAGGAATGCCAAGTA ACTGTTCCTAGACCTACGGCAAAGAAAACGAACAAGATATACAAGAAAGAGCTTGCACTTGCATTCTTACTGCTAACTGC TGCAGTTAGGAGCCTATTATCAGCACAGGGGATGCACTTCTACTACTTGTTATTTCAAGGTGTGTCATTCCTCCTTGTAG GTCTGGATTTAATTGGTGAACAGATGAGCTAG
Protein sequence (LotjaGi3g1v0343600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKGDPELALVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLN FFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVKVLCELPESYEAYRKQQHRWHSGPMQLFRL CLPAILTSKIGFWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPIWVICYIPVFMSFLNILPAPKSFPFI VPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKSGRSSEPDLLAAEERDSKAMSLQLHRGSSDSGLSELNKIKECQV TVPRPTAKKTNKIYKKELALAFLLLTAAVRSLLSAQGMHFYYLLFQGVSFLLVGLDLIGEQMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 177 | 177 | - | – | |
| PANTHER | 1 | 382 | 382 | 2.2E-266 | – | |
| PANTHER | 1 | 382 | 382 | 2.2E-266 | – | |
| Gene3D | 3 | 137 | 135 | 2.1E-40 | ||
| SUPERFAMILY | 8 | 221 | 214 | 7.31E-34 | ||
| Pfam | 12 | 207 | 196 | 3.8E-21 | ||
| Phobius | 178 | 207 | 30 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 208 | 212 | 5 | - | – | |
| Phobius | 213 | 231 | 19 | - | – | |
| TMHMM | 214 | 231 | 18 | - | – | |
| Phobius | 232 | 337 | 106 | - | – | |
| Phobius | 338 | 353 | 16 | - | – | |
| TMHMM | 338 | 360 | 23 | - | – | |
| Phobius | 354 | 358 | 5 | - | – | |
| Phobius | 359 | 378 | 20 | - | – | |
| Phobius | 379 | 383 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0343600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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