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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0351000 |
| Transcript ID | LotjaGi3g1v0351000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Golgi SNAP receptor complex member 1; TAIR: AT1G15880.1 golgi snare 11; Swiss-Prot: sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1; TrEMBL-Plants: tr|I3SYN2|I3SYN2_LOTJA Golgi SNAP receptor complex member 1; Found in the gene: LotjaGi3g1v0351000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72996213..73004405) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGGCCAGAAATCTTGAAGCTCAGTTGGACGAGCGGATGAGTTCTTTTCGTAAATTGGTTTCTGCTAGTGTTTCTGC AAAAACTGATGCTGCAGAGAATGATCTAGAGTCTTGGATTGAACAATTACTAAAACAACTCCAACAAGTAAACTCACAGA TGCAAGCTTGGGTATCTTCTGGTGGTACAGATATGGTTTCTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATATC ACCCAGGTATTCTATAGTCTGGGCTAGTGTTACCCTATATATGGTCTTATGCTGTTCATGGTGCATTCATTGTTTTGAAT TGCTTTCTGTGTGCAAATAAGGGACAATGATTTAATTCTGACAAGAGTGGATCTGAAATAAGTATGTTCTACTTCTCCAC TCCCATTTATGGGAAGTACATATTGTAGGAACTTTTTCCAAATGAAATTTATAAGTAAGTTTTTGTGTAACAAGAATCCT CCTTTTACATACAAATGATATGACAAAGACAAACTCCTTGTGACCGTCATTGGCGTTACTTCTTGTTAGAACCTTTTACT TGTGATTGAATTATTGTAAGCTAGTTGAGACATGATACATATTTTCTGAATCTTATTCTTTATTATTTCTGTAGTTTGCT CTTCTTAGATATGTTGACATCAAGTAATTTTTTTTTATCTACTTAAACTTTTTGCACTGAGTTGGATGTAATTTGATAGA ACTCAGGGTCCGCAACAAGCTAGTGATGCGCCTCTGATTGCTGATGGGGCAGTAGGGCCCAAAATATGGAAAGTATATTC TAGAAGGGGCAAGGTTGGCATGACTCATAGTTAGTTAGCCAAGGTGGTGACATGGGGAAAGAGAGTGAGAGAGGAAGAAT CATACCATGTAATTAAAAGGAGTGTGAGGAGAGTGGGGGAGGGTATTCGGTTAGAATCTTATTGTTAGAGAGCAGATTGC ATTCTGTGCTATCTGTAGGAGCAAGGCTCTGGTCAGTGAAGGGGAATTCCATTTCCTCTCCTCTGTAATTCTTCATTCCA TTTCACAATCAATACTAGAACTTCTCTCTTATTTCTTTCTTGTGTTCTTGTTTCCTGAGTTCATAAATTGGTTCCTAACA ATTTGGTCCGACCTACCGGATCCAAATCGAGGAAGAGCCAGTGAATGCCATCCAAGAGACAGAACAAAGGAGCGAGCAAG GAGATGGAGGCGAAAATCGCGACGCTGGAAGCAGAGCTTTCTGGAGTCAAGTCGACGCTGACAACGATGGAGCGTAACCA GGAAACGCTCATCGCGCTGCTTGAGAAATCCATAGGCAAGACGAAGGTCGATGATGATTCCACCGGCGACAACGTGACCC CTGCGAAGGAGGCAGATCATGGGTCAGGATCGGGAAAGGGAAGTATGACCAGACTCACCGGAGATGTGCTGTCGGAGTTT CGACAGTCAGCGAAGAAGGTGGAACTTCCCATGTTCGATGGTGACGATCCCGCGGGATGGATCTCGCGCGCAGAGGTCTA CTTCAGGGTACAGGATACGCCACCAGAGGTGCGAGCTAGCTTGGCTCAACTGTGCATGGAAGGACCCACGATTCACTTCT TCAATTCGCTCCTTAGCGAAGAAGAGAATCTGACATGGGAACGCTTCAAATGCGCATTGCTGGAGTGCTACGGGGGCCAA GGTGACGGCGACGTTTACGAACAACTCACCGAACTCCGGCAACGGGGAACCGTGGAAGAATACATCACCGCTTTTGAGTA CCTAACGGCGCAGATTCCTCGCCTACCTGAGAAGCAATTTCTGGGGTATTTTCTGCATGGATTGAAGGGAGAGATTCGGG GACGGGTTCGGAGCATGGTAACCATGGCAGATTTAAGCAGGATGAAAATCCTGCAAATAGCGAGAGCTGTAGAAAGGGAG ACGATGGGCGATGGTGGATCGGGTCATGCGCGCCCGACCCGATCGTCACTAGGAGGAAACCGGGCAAACGGATCAGGGTC CAATAGGAGCTCCGATTGGGTTTTTGTTAAGGGAAGCAAGGAAACGAACTCGGGCTCGGGTTACAATAACTCACGCGCTG GAGGGAATGGGCCTCGCAATGATAGACAGGCCCAACCTGAGAAGAACCGCTCCACACCCAGAGACAGAGGATTCACTCAT CTCTCATACAATGAATTGATGGAGAGAAGGCAGAAGGGATTGTGTTTCAAGTGTGGGGGTGCCTTTCATCCTATGCATCA GTGCCCAGATAAGCAGCTGAGAGTACTGATTATGGAGGATGAGGAGGAGAAGGAAGGAGGGGGAAACCTTCTAGCGGTAG AGGTCATTGAGGAGGAAGAAAGTTCTGAAGGTGAGCTGAGTTCCATGAGTTTGTCTCAGGTGGAACAAGTAGGAAAGGAC AAACCGCAAACTATCAAGCTGTTGGGTCTCATTCAAGGACTGCCAATTGTGATATTAATAGATAGTGGGGCAACCCATAA TTTTGTTAGCACTTCTTTGGTGCACAAGCTTGGTAAGACAGTAGTGGACACACCTTCCTTAAGGATCACTCTTGGAGATG GTTCTCAAGCAAGAACTAAGGGAAAGTGCAAGGAATTGATGATAATAGCCGGAAACCACCCTCTGTGTGTGGATGCCCAA CTCTTCGAATTAGGGAATGTGGATATGGTGTTGGGAATAGAGTGGCTTAGAACCTTAGGGGATATGATAGTCAATTGGGA CAAGAAGACTATGAGTTTCTGGTCAGGACACAAGTGGGTTACCCTGCAAGGCCATGAGGAGCAAGAAGGGCTGCTAGTGG CATTGCAAACTATGATTAGTAGAGCTGGATTTTCAGGGTACCTTGGTAAGGAGAAGGTTCAATTGGAAAAGGATAACAAG GGAGTTACTGGAGTTCAGCAAGCTGAGTTGGACATGATCCTGGAGAGACATTCTGTGGTTTTCCAAGCTCCAAAAGGCCT TCCTCCTAAAAGGAACAAACAGCATGCTATCACACTCAAGGAGGGTGAAGGTCCTGTGAATGTAAGGCCATACAGGTATC CCCATCACCAGAAAAATGAGATTGAGAATCAGGTGAAGGAATTGCTGGAGGGAGGGGTTATAAGGCACAGCACCAGCTCA TTTTCCAGCCCTGTGATTTTAGTGAAAAAGAAGGACCATAGCTGGAGGATGTGTGTGGATTACAGAGCTTTAAATAAGGC AACCATACCAGACAAGTTTCCAATACCAATCATAGAAGAGCTGCTTGATGAACTCCATGGTGCACGGTATTTCTCCAAGC TTGATCTCAAATCTGGTTATCACCAAGTGAGAGTCAAAGAAGAGGATGTACACAAAACTGCTTTTAGGACCCATGAGGGC CACTATGAGTTTTTAGTAATGCCCTTTGGCCTCATGAATGCACCATCAACCTTTCAAAGTCTCATGAATGATATTTTCAG ACATCTTCTCAGGAAAAGGGTGTTGGTGTTCTTTGATGATATACTAGTTTATAGTAAGGATTGGCCCTCTCATTTAGAGC ATCTGCAGGAGGTTTTGGGTATTCTGAGAGAGCAAGGGCTGGTCGCAAACCGCAAGAAATGCCTGTTTGGAAGGGAAAAG GTGGAGTATTTGGGACATATGATTTCAGGTCAAGGTGTCGAAGTGGATCCCAGCAAGGTAGAAAGTGTCACCTCTTGGCC TACACCTAAGAATGTCAAGGGGGTGAGGGGTTTTCTGGGCTTGACTGGGTACTATAGAAAGTTCATCAGGGACTATGGTA AAATAGCAAAACCCCTGACTGAATTAACTAAGAAGAATGGTTTTGAATGGAGTGAGAAGGCACAAGAGGCTTTTGAAACC TTGAAGAAGAAGCTGACTACTTCACCTGTGCTAGCTTTACCTGATTTCTCCAAGGAATTCACCATTGAGTGTGATGCTTC AGGAGTAGGAGTAGGGGCTATACTGATGCAAGAGAAGAGGCCCATTGCTTATTTCAGTAAAGCACTAGGGGTGAGAAATC TCTCTAAATCTGCTTATGAGAAGGAGTTGATGGCTTTGGGGTTAGCAATCCAACATTGGAGACCTTACCTACTTGGCAGA CATTTCAAGGTGACTACTGATCAAAGGAGCTTGAAAGAGTTGCTACAACAGAAGGTGGTTACTATGGAACAACAGAACTG GGCTGCAAAGTTGTTAGGGTTCGATTTTGAGATCAGTTACAAGCCAGGGAAATTAAACAAGGGAGCTGATGCTCTCTCAA GGGTGAATGAGACCTTGGAGCTGCGACAGATGGGCTCACATGTGGACTGGTTAGGAGGAAAGGATCTGAAGGAAGAAGTC AGTAAAGATGAAGAGTTACAACAAATAATTAAGTCTGTCCATGAGAAGAAAGATAGCTCACTGGGGTACACTTATGAAAA TGGCATTCTGCTGTATGAGGGGAGGCTAGTCTTGCCAAGGGAATCACCGTTGATTCACACCATGCTTACTGAATTCCATA CCACACCACAAGGAGGGCACTCAGGGTTTTATAGAACCTACAGAAGATTGGCTGCCAATGTGTATTGGAGGGGAATGAAG TCTGCTGTTCAAGATTTTGTGAAGCAGTGTGATGTGTGTCAAAGACAAAAATACCTTGCAAGCTCTCCAGGAGGTCTCCT CCAACCATTGCCCATTCCTGAGAGAATTTGGGAAGATTTGTCTATGGATTTCATAACTGGACTTCCCAAATCTAAAGGGT TTGAAGCAATTTTAGTGGTGGTTGATAGACTCTCTAAGTATGCACATTTCATCCCTCTCAAGCATCCTTACACAGCAAAG AGTGTAGCTGAGGTATTTGGGAAGGAAATAGTGAGATTACATGGGGTACCTTCTTCTATTGTAAGTGATAGAGACCCTAT CTTTGTAAGCAATTTCTGGAGGGAACTGTTTAAGCTTCAAGGAACCAAATTGAAAATGAGTACTGCTTACCACCCTGAAT CTGATGGGCAATCAGAGGTGGTGAACAGGTGCCTTGAAACATATCTGAGATGCTTCATAGCAGACCAACCCAAGACTTGG GTCATCTGGATACCTTGGGCTGAGTATTGGTACAATACTTGTTTCCATGCCTCTACAGGTGTGACCCCTTTTGAAGTAGT CTATGGAAGACCCCCTCCCACTATCACACGTTGGATACAAGGAGAAACCAGAGTAGAGGCAGTACAAAAAGAGCTGTTGG AACGTGATGAGGCTTTGAGACAGCTAAGGCTACAACTGGCAAGGGCACAGGATAGGATGAAGCAATTTGCTGACAGAAAG AGGAGTGACAGGAGCTTCAGTATTGGAGAATGGGTTTTTGTTAAACTCCGGGCCCACCGCCAGAAGTCAGTGGTCACAAG AATCTATGCCAAGTTGGCAGCCAAGTATTATGGTCCTTATCCTGTGGTAGCAAGGGTGGGAGCAGTAGCATATCAGCTTA AATTACCCCCTGGATCCAAGGTGCATCCAGTTTTCCATGTATCCCTCTTAAAGAAAGCAGTGGGGACTTATCATGAAGGA GAGGAACTTCCTGATCTGGAGGGAGATGGGGGAATCCTCATTGAGCCTACTGAAGTATTGGCTACCAGAACAGTTCAATT ACAAGGGCAATCTATCAAGCAAATCCTCATCCAATGGAAAGGGCAGCAACCAGAAGAAGCTACTTGGGAAGATGTTGATA TGATTAAAAGTCAGTTTCCTTCTTTTTGCCTTGAGGACAAGGCAAGAGCTTATGGAGAAGGCATTGATAGAACTCAGGGT CCGCAACAAGCTAGTGATGCGCCTCTGATTGCTGATGGGGCAGTAGGGCCCAAAATATGGAAAGTATATTCTAGAAGGGG CAAGGTTGGCATGACTCATAGTTAGTTAGCCAAGGTGGTGACGTGGGGAAAGAGAGTGAGAGAGGAAGAATCATACCATG TAATTAAAAGGAGTGTGAGGAGAGTGGGGGAGGGTATTCGGTTAGAATCTTATTGTTAGAGAGCAGATTGCATTCTGTGC TATCTGTAGGAGCAAGGCTCTGGTCAGTGAAGGGGAATTCCATTTCCTCTCCTCTGTAATTCTTCATTCCATTTCACAAT CAATACTAGAACTTCTCTCTTATTTCTTTCTTGTGTTCTTGTTTCCTGAGTTCATAAATTGGTTCCTAACATAATTGAAA TCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTCGAGCTAAGCAAGAGCATGCTTCACTATTAGAGGATTTTAAAGAATTT GATCGAACAAGATTAGACTTGGAAACAGGTGCAGGATCTGAACAGCATGCACTCCTTAAAGAACGTGCATCTATCAGCCG GAATACAGGACATGTCAGTGTTATCTAACAATTACTTTACTTTTGTGATATTAAATGCCATTTTCTTTCTTTAGTTTAGA TATTTCCAGTGGTAGTCATACTGTTATATTTTATTATGTATGAAACTAATTAAAACTTCTCTCCTGCCAATAACACATCT ATTTGGATATTGACTACTTTTTCTTTAGCTGGATTATGTTGCAGGCTTTGAAACGGGCAAGTCACGTGCAAGCATAAAAA AAATTATATTAACTCATTAGGGTTGTTGAGATCCTACATGGCTACATCACCTAGAGATATAACCGAAGTATGTAGCTTAT AACGGCATGTGCAATCCTCACCTTATGAGTTAGCTTTTGAGATAGGGTTAGGCCTTGCCAAAATTTATGATGCACCCACA ACTGTCTAAAATCAACCTAGTCCAACGGATTTCCCAATAAAATCTACCTGGCCCTGCAAATTTCCTAGTGCAATCAACAA ACATTAAAAACCAGTCTTACGATTTCCATGCTCCATATGCCCAGTTTGGGGTATTAGAGGGTGTGTTGAGATCCCTCATT GACTAAAGATATGACTAGGGAGAGCTTATAAAATTTTGGACCAACATGAGCTAGGTCTTGGTCAGAGTTAAATCTAACGA GTGCCATGAACCAACAATCCTAAAAATTTAAGCTATTGGGTGAAAACACATGAATTATTTTATTTTTACAACACATGCCC TCACGAACACCATTTGGGCTTAACTTCTTATTAGAAGAATGGAGGTAAGAAAGATCTCTAGATTACTTGGTCATAGAAGC TATGACACCATGTCCTGAATCAACTATCTCTAAAACGTAAACTGTAAGGTAAAGACGCATGAATGGTTTTTATATTATAC CTGTTTAGGAAAAGAATATAATAATGTTTGATGCTGGGATGAAGAAGGGATTTGGGCCATGAGAATTGGGTGAATATCTT GTTAAAACTTCAGGATTGCAATTTATTATTACTTTTTCAAATCAAACTTCAGATGTGAAGATTTCTATAAGGAGGAGAGT TTAATGCTAAAAAAACAACGGGATGCTATTATTGGAATAGTGGATTGTGCTCTAGATTTTTTTATTCATTTAGTTGTTTA TTTAATTTGTAACTTGATCTAATCAGCGTGGGTTTAAGAAACTGCTTTTGAGCCCCATTAAACAAAAGCCTAGTTCTTTA AGTATATTAATGCTGAAATGTTAGAATTAAAAAAAAGTATGTTAAGGCTTTTTTGGAATTTCGTATGCAGGAAATGCTTA ACACGCCTTACATTTGGGACATGTCTTCGTTTTATTTTTCTTTAAAATTCTGCCTGTTCTTCAATTGGGAATAATATTGT TTTGAACTGTTCTGCTCGTTCCTGTGCTGCAGGTGGACACTGTTATTTCACAAGCACAAGCAACACTCGGTGCGCTTGTC TTCCAGCGTTCAACATTTGGTGGCATCAATTCAAAGATCAGCAATGTGAGCGGTCGCCTCCCAACGGTACGACTCTAATC CGTTTCCTTTTTACCATCTATGATTCTACATCCTGCATTGTGTTGTGACTTGTGAGATTGAATAAGAAGTACCCAATAAA AAGGCATCGAATAATGATGTTAATTTCTTCGTGAAATAGTTTGGTAGATTTCAATTTCATGAGAACTGCTGAAAGATGTT GTAGTTTTTAGTCTGCATGAATGTTGTATTGCTTAGAAATCTGCTGTTTAATATAACTGCTTTCAATAATATAATGCAGG TAAATAGCATACTCGGGGCAATAAAGCGAAAAAAGTCAATGGATACCATTATACTCTCTCTTGTTGCATCTGTATGCATA TTTCTCATTTTCATCTACTGGCTAACCAAATGA
CDS sequence (LotjaGi3g1v0351000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTTTTCGTAAATTGGTTTCTGCTAGTGTTTCTGCAAAAACTGATGCTGCAGAGAATGATCTAGAGTCTTGGAT TGAACAATTACTAAAACAACTCCAACAAGTAAACTCACAGATGCAAGCTTGGGTATCTTCTGGTGGTACAGATATGGTTT CTCATACTTTGACTAGACACCAAGAAATTCTTCAAGATATCACCCAGGAGTTTTATCGTCTTCGCTCAAGTCTTCGAGCT AAGCAAGAGCATGCTTCACTATTAGAGGATTTTAAAGAATTTGATCGAACAAGATTAGACTTGGAAACAGGTGCAGGATC TGAACAGCATGCACTCCTTAAAGAACGTGCATCTATCAGCCGGAATACAGGACATGTGGACACTGTTATTTCACAAGCAC AAGCAACACTCGGTGCGCTTGTCTTCCAGCGTTCAACATTTGGTGGCATCAATTCAAAGATCAGCAATGTGAGCGGTCGC CTCCCAACGGTAAATAGCATACTCGGGGCAATAAAGCGAAAAAAGTCAATGGATACCATTATACTCTCTCTTGTTGCATC TGTATGCATATTTCTCATTTTCATCTACTGGCTAACCAAATGA
Protein sequence (LotjaGi3g1v0351000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSFRKLVSASVSAKTDAAENDLESWIEQLLKQLQQVNSQMQAWVSSGGTDMVSHTLTRHQEILQDITQEFYRLRSSLRA KQEHASLLEDFKEFDRTRLDLETGAGSEQHALLKERASISRNTGHVDTVISQAQATLGALVFQRSTFGGINSKISNVSGR LPTVNSILGAIKRKKSMDTIILSLVASVCIFLIFIYWLTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 198 | 198 | 5.1E-82 | – | |
| Phobius | 1 | 179 | 179 | - | – | |
| PANTHER | 1 | 198 | 198 | 5.1E-82 | ||
| PIRSF | 1 | 199 | 199 | 4.3E-62 | ||
| Coils | 27 | 47 | 21 | - | – | |
| Pfam | 111 | 175 | 65 | 1.2E-17 | – | |
| Phobius | 180 | 199 | 20 | - | – | |
| TMHMM | 180 | 199 | 20 | - | – | |
| Phobius | 200 | 200 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. | ||
| Cellular component | Cis-Golgi network | The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0351000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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