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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0356900 |
Transcript ID | LotjaGi3g1v0356900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3; TrEMBL-Plants: tr|I3T388|I3T388_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73877961..73879872) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACAACAGTGCGGTTCAGTCGCAGGGGAGTATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGT TTCTTCCAAAAGCAGCAACCCCACTGAATTTGTAAATCAAGGTATTCTTCATTGCTTTTATTGCACAGATATTTTACTAA ATAGGCATTTCATTGTTTGAGATGGGATTTTAACCCCACATTGTGAAATGAAAAAAAGAATGATATTGGCTTGCACAATG GTGGCTGAAAGCATCCATTGCCTATTGGTGGGTTGATCCACTCCTTCAACAAGTCTATTACCTAATAACATTGCGTGCGT ATGGAGAGATATGGGGGGTGGCGTGGGGGTAGTTACACTTCAGGAATTCCTTTATAGGGAGGCATGCCAATTTTTGGCGT ACTTATGATAAGATAGATATATTTGGTGTATTTAGCTTCTCATTTATGAAATGTGATTTGAATGATGTGCTGATTTATTC CATTAAGTGAAGTCAGCTATATGGATCACATGATCCATATTAAAGATATGACCAGTTTTACATTGGCTGCTGCAGGCTTA ACATGTGTTTTTAATGTCGCGCGTAGCAAAGAATTCGGCTAACCCTTACTCGTTCACTTAACAAACACAATTCTCATTAA GCCTCCTCTTCAATCATTTGAGCCCCAAAAACCTGAATCACTCCTTACTAAAGAAGCATTAAAAGAATTTTCTCAAATTC TCTAAGTTCGTAAGGCTTCTATTCGGCCAAACACAAACCAACTTTCACCAAATACCTATAATTCTCAAACACATTTTCTT CCACCTCAGTTTCATCCCCTAACGTGGTGATTTAATCTAGTTTATATTGAATTATCAAATAATATATTTTTTTGGTTTGA CTAGCATTGTTCATATGTTTTTCTTATGCGCCACACGCTCATTCCGGAAACCGTGCTAATTGCCACCTCTTTTCCTGTGG ATTACTTTTTTATCACTCTCTTAATGTGTCTAGTCAGTTTTGCACTTTACTAACTTATTTATATTTTGTTGAAAGATCAT TGGTTGCAAGTGCATTCATGAAAATATTTCCGGTTGCAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTGGA CCAAAAAAGCCTGAGACCCGAACACAACAGTTGCGAGAACCTAAATTAAGGTAAATAACTCTGTTGGATTAGTTTTAGTG GCAGCAGGTTCTTATTTTTGTAATTTTGTGAGTTAGGAATGGATTTCAGTGAATACATCTTTCTATAAGCTTTTATTACT TCTTTCCCCTGTCTGATTTTGCACCAACTTTATACAAATTGATAGTGTTATACTGTTTTACATTTTTACGCTGATAGCTA AACAATTAGAAGCCAGTTGTAGCATCGAGAGGAGAAAAATGTGTAAATGATAGATATCCATATTCCATGGTGTGAAACCA TCCTTAGCTCCTTGCTGCTACATGGATGTCTACTGCCATATTCAAGGAAAGGAACTTAGCTTAGTTTTTAGTTGTTGGAT TCTTGAATATTGGCATGCTAAGTTCCTTTAGGTTGGTATGGTGCATTGCAACTACTCGAGTTGCCGAATAAGATTTCCAC ATGTGGCTGATGAACTTTCCTTTTACTTTCAGTAATTATGAACTTGTGTTTTTTTTATCTTGCCAGAACTTATGGTCTGT GCCTTGCCAAATTTTGTTGGCTTTGCAGTTGGAATGCAACATATGAAAGTTTACTGGGGAGCAACAAGCCATTCCGTCAG CCGATTCCTCTCGCTGTAAGTATCTAATTCTGAACCACCATGCAGTTTAAGTAAACATTGATGATCTGACAGTTTGGTTC TATCGATTTTACTGATAGGAAATGGTAGACTTTCTTGTGGACATCTGGGAACAAGATGGCCTTTACGATTGA
CDS sequence (LotjaGi3g1v0356900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAGTGCGGTTCAGTCGCAGGGGAGTATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGT TTCTTCCAAAAGCAGCAACCCCACTGAATTTGTAAATCAAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTG GACCAAAAAAGCCTGAGACCCGAACACAACAGTTGCGAGAACCTAAATTAAGTTGGAATGCAACATATGAAAGTTTACTG GGGAGCAACAAGCCATTCCGTCAGCCGATTCCTCTCGCTGAAATGGTAGACTTTCTTGTGGACATCTGGGAACAAGATGG CCTTTACGATTGA
Protein sequence (LotjaGi3g1v0356900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNSAVQSQGSISSASVTNQAVVPHGVSSKSSNPTEFVNQGLNLWNQTRQRWVGPKKPETRTQQLREPKLSWNATYESLL GSNKPFRQPIPLAEMVDFLVDIWEQDGLYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 110 | 110 | 1.7E-63 | – | |
PANTHER | 1 | 110 | 110 | 1.7E-63 | – | |
MobiDBLite | 1 | 35 | 35 | - | – | |
Pfam | 6 | 68 | 63 | 7.5E-12 | ||
Pfam | 69 | 110 | 42 | 3.9E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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