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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0356900 |
Transcript ID | LotjaGi3g1v0356900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3; TrEMBL-Plants: tr|I3T388|I3T388_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73875132..73880880) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAATCCAGTCTTGCTTATATTATTCTGTTTTGGCCTTTTCATTTGGGAGAGAAGAAAGAGGACGAAGAACAGGAAG AAGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCAGAAGGGAGAGCTATCGGTTTCAGAATCCAAA CCTCACAGCGACATTCTCTCAAACACAAAAGGTTCCTCATGCATTTTCTCTTTTCCTTTTACAATTTTCAATTTCATCAT CATTTTGATAATTTTCAACCTTTTTTTCTGTTTGAATTTTTAGGATTGCTCTTGAATCGGGCTTTGTCGTCTTCATCTCT CTGCAAATTCGTTTTGGCAGATCTAATCTCATAAAGATTTTTTGATTTTTCTGGGTGATTCAGTCACTGCATGCATATGG GGTATGTTTTCTGTATCCAACCAGAACCGAAGAAAGTTAACTCCTTTTTGTCTTTTTTCCTTTTATTAGCTTTTCTGTCA AAATGGGTCTCTGTGTTTTTCCCTATATTGATTGATAATCATGTGGTGGGGGTGATGACCCTGAAAACTGTTACCTTTTT TTTTCTCTTGATTTATTTTGTTGTCGAGACTCTAGATGAAAATGATTCATGATGGACTATAGATTCCAATGCCAGCATTT TCTGTTTTGGGAATAGAGAATGGCTAGCTGTGTATATGTTTTTAGTGTAAAATTGTCAATAAATTATGTCTGTTTTTTTT TAATTTTCTGGTTTAGAGGGACTAGATTGCCTTGTGTGGCAAATCTATTTGCAGCTATGAAATTCAAATGTTTGGATTGT GTTGGTTGCTGTGGATAATTTGTGATTATAATGTGGTGCATAACCGAAATTAACGTGATTGTAACAGAGCAGTGGTTGTG TTGGATGCTATAAAAGGCCCACACTAGTTACTACAGTGGATGAGCCAACACAAGGGTTGACAACACAAGGTGAGGCAGTG AAGAAACATAGTACATCAGAGGATTTCTGGACCACCAGCACGCATGATATGGACAACAGTGCGGTTCAGTCGCAGGGGAG TATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGTTTCTTCCAAAAGCAGCAACCCCACTGAATTTG TAAATCAAGGTATTCTTCATTGCTTTTATTGCACAGATATTTTACTAAATAGGCATTTCATTGTTTGAGATGGGATTTTA ACCCCACATTGTGAAATGAAAAAAAGAATGATATTGGCTTGCACAATGGTGGCTGAAAGCATCCATTGCCTATTGGTGGG TTGATCCACTCCTTCAACAAGTCTATTACCTAATAACATTGCGTGCGTATGGAGAGATATGGGGGGTGGCGTGGGGGTAG TTACACTTCAGGAATTCCTTTATAGGGAGGCATGCCAATTTTTGGCGTACTTATGATAAGATAGATATATTTGGTGTATT TAGCTTCTCATTTATGAAATGTGATTTGAATGATGTGCTGATTTATTCCATTAAGTGAAGTCAGCTATATGGATCACATG ATCCATATTAAAGATATGACCAGTTTTACATTGGCTGCTGCAGGCTTAACATGTGTTTTTAATGTCGCGCGTAGCAAAGA ATTCGGCTAACCCTTACTCGTTCACTTAACAAACACAATTCTCATTAAGCCTCCTCTTCAATCATTTGAGCCCCAAAAAC CTGAATCACTCCTTACTAAAGAAGCATTAAAAGAATTTTCTCAAATTCTCTAAGTTCGTAAGGCTTCTATTCGGCCAAAC ACAAACCAACTTTCACCAAATACCTATAATTCTCAAACACATTTTCTTCCACCTCAGTTTCATCCCCTAACGTGGTGATT TAATCTAGTTTATATTGAATTATCAAATAATATATTTTTTTGGTTTGACTAGCATTGTTCATATGTTTTTCTTATGCGCC ACACGCTCATTCCGGAAACCGTGCTAATTGCCACCTCTTTTCCTGTGGATTACTTTTTTATCACTCTCTTAATGTGTCTA GTCAGTTTTGCACTTTACTAACTTATTTATATTTTGTTGAAAGATCATTGGTTGCAAGTGCATTCATGAAAATATTTCCG GTTGCAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTGGACCAAAAAAGCCTGAGACCCGAACACAACAGTT GCGAGAACCTAAATTAAGGTAAATAACTCTGTTGGATTAGTTTTAGTGGCAGCAGGTTCTTATTTTTGTAATTTTGTGAG TTAGGAATGGATTTCAGTGAATACATCTTTCTATAAGCTTTTATTACTTCTTTCCCCTGTCTGATTTTGCACCAACTTTA TACAAATTGATAGTGTTATACTGTTTTACATTTTTACGCTGATAGCTAAACAATTAGAAGCCAGTTGTAGCATCGAGAGG AGAAAAATGTGTAAATGATAGATATCCATATTCCATGGTGTGAAACCATCCTTAGCTCCTTGCTGCTACATGGATGTCTA CTGCCATATTCAAGGAAAGGAACTTAGCTTAGTTTTTAGTTGTTGGATTCTTGAATATTGGCATGCTAAGTTCCTTTAGG TTGGTATGGTGCATTGCAACTACTCGAGTTGCCGAATAAGATTTCCACATGTGGCTGATGAACTTTCCTTTTACTTTCAG TAATTATGAACTTGTGTTTTTTTTATCTTGCCAGAACTTATGGTCTGTGCCTTGCCAAATTTTGTTGGCTTTGCAGTTGG AATGCAACATATGAAAGTTTACTGGGGAGCAACAAGCCATTCCGTCAGCCGATTCCTCTCGCTGTAAGTATCTAATTCTG AACCACCATGCAGTTTAAGTAAACATTGATGATCTGACAGTTTGGTTCTATCGATTTTACTGATAGGAAATGGTAGACTT TCTTGTGGACATCTGGGAACAAGATGGCCTTTACGATTGAAGCTTGAGGAACTGTTTTTTGGTTTTGATCCCTGAAATAA TTCTAGTTCCTGTTTCTTTAGGAAGAGGATTGTGCACATTCTGCATTTTGTACATCAATTGTCACATGCCAATGAGTAAA ATTTCTCTCTGAAAGCCTTGAGAAAGATAATTGTATTATACTTTATTTAATTAATTGTCCTGGTTGCCCTGGTATCTGAA GAGGCAAGTTTTGAAAAACTCCTTTTGTTGACAGCATTCGGCATCAGTGGCTGGAACTTGCTCTGCATTTCCATAAAGTT AGACGCGAAATTACATCAGAAATGGTCATCAACACTTGACATATCATTTCTAATTTGGTTTCATATTCGTTAAACCTGAA AAAATAAAATTCTGAATGATTTTTGTCATTAATTTTTTTTAAAGGAAAATCAGCTATTTAACTTTGATAACATTCTAGTA TTATAGATTTTTTTTTTGGTCAAAAGTATTATAGATTTGTAATGCTACATCTGGAAAACTGGGTCACATTTTTCATCCCC ACCACCCATATTCATCAAGAACAATGCTCCATATTAAACCTTTTTTTTTGACAGGATGCTCCATATTAAACTTGACAGCA ACTTGTATAGGGATAAGCTATAGGCTCTTTTTGTGAGTAGGCCTAGTTTGTTTTAGCTTCTAATTTATGTGAGCATTTTA ATGAAATAAGTATTTAGCTGACTTACAAAAGACTTCTTTAGAAGTATATCTATACTGGCTCTTAGAAAACACTTGGTTAT TACAAGCTCTTTTCAATTTTCTTTTCCTATAATTACTTGTTCAGGATATTTCTTTCTTACTCCTAATGGTAGCTGGGAGC TTGGGACTTCAAATCTGTAAAATTCCTTTTAATGGGATTTCTGTAATATTAAAGTAGCATATATTTAACTTGATATATCA ATTTGGGCTTGGATCCAACACTAATTTTTGGAAACTCGTGACTCGACAAAAGAAATGATGCTGGTGTATTGTTCTTTTCC TCTGGAACACTCTTGTGAATGACAACATGTCACGTCTAAGAAAGAACCAGAACTATCCAATACTATCATTATTCTCAAGT TCTACATGTATCTAGAGCCACTTTGTGATGTGCCTCTCCGACATATCCTAGAAGTTCTTGGACACTTCTGTAAGCATCCA GAGCCAAGTGACCAACATCAACCCCATATCTTTATTTAAGTTGTGTCAGCAGTTCCTTTCATTATCAACGAACACAAACA AATTACACATAGACAAGCACTTCAACATCAAACTCAACAAATGGCTTTGGCACGTTTGGCTTTGAGAAATTTGCAGCAAA GGGTCTCTGCTTCTTCCTCTGCTCCCTTGATAAGGCATCATGGTAGTGTGGAGAAGCAGAGGTGGGGCAATGGGTTGGTG GCAAGGTTTTCCACTGCAGCGAGTGAGAAGGAGAAATCTGAAGGGAGTGAAGTTGCAGTCACGGAAGGTAAAAAGTCAAG GTTGTTCCCTAGGAGGAAGAGTAGGAGATGGCTTTGGAGAAATGATGACCGTGACTTCTCTCCTGCACTTCATGGTATGT ATATCATCACCTTCACTTTTATAATCTAGATATTGAAAATGAGGTGAAACTTCATTTCCACAACTAAAAGGAACCCTTCA ACATACAAATATTTCAAACGTTGAAAACCCAATTCTTGACAATTAGCATTTAATATAACTAGTACTCCAACATTGTCAAT ATTCAATGAACAAACAGGAGCATATGTTTGTTTGACATTGTTTTAGCGTTACAAATGATGCAAAGACAATTTATATGACC TAAATGAAATGAACACAAATATTTTCGTCAACGTTCATTCACGCATTTAAACAAACATGTCAGGTCGAAGGAATTTTCAA ATCTTAGAAAATGGCTAAACTCTAGTTGTTTGGTTTGAATAATTGAATCTAACTGGGGTCAATTTGGTGCGTACATTATT GAATTGATAGAATATATTCAGTAGAGTTAGGTACTATAATCATTGTTTAAAATTACACAAATTAGTCATTGAAAATTTAA ATTTTACATCAAGACAAAAAAAAACCTGTTATTTTGATGAAACACAGGCTTACATTGTATTTTATGTTTGGTTCTTAGAG TTGTTTCCATCAAGCCTTGGGAATGCACTAATGCAAGCAACTGAGAACATCAACAAGCTATTTGACAACATGAATTTGAC ACCATGGTCTCTCAGCGGGCGCGTGAAAGAGTGGGATGACCATTACAAACTTCGTTATGACATGCCAGGAATTGCCAAGG AGGATGTAAAGATCACCATTGATGATGGGATGTTGACAATTAAGGGGGAGCACAAGGAAGAGAAAGAAGAAGGGGATGAT GATGAGTATTGGTCTTCAAGTAGCTATGGCTACTATAATACCAGCTTGGTTTTGCCTGATGATGCCAAGGGTGATGAAAT TAAGGCAGAGTTGAAGGATGGTGTGCTAACTGTGACTATTCCTAGAACTGAGAAGCCCAAAAAGGATGTGAAACAAGTGA CTGTACAATAAATTTGGAATTTTATGAGTGTGTGGTAGTGATGTCGTGAAATATGAAGTTGTGAGCCTATGGCGTTAATA AGAAATAAAATTTCAGCCCTGTTCGTGGAAAATTTCAATTGGAATCATTCTATTATTGTTTGCCCTATTTTGGATTTAAT GACTTCTTTTTGGGCTTTGTTGTTGTATAGGGTGGTTTTTGCTCAGGCTGCAGTGAGAGTTGTTTTCTTTTGTCTGTTGG GCCTAGGTTGTTTTCTTTAGAAATGAAGGTTTTTTTTTTTTAAAGAAATGAAGGTTATAAAGATGAAGG
CDS sequence (LotjaGi3g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATGGGTGGTTGTGTTGGATGCTATAAAAGGCCCACACTAGTTACTACAGTGGATGAGCCAACACAAGGGTTGAC AACACAAGGTGAGGCAGTGAAGAAACATAGTACATCAGAGGATTTCTGGACCACCAGCACGCATGATATGGACAACAGTG CGGTTCAGTCGCAGGGGAGTATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGTTTCTTCCAAAAGC AGCAACCCCACTGAATTTGTAAATCAAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTGGACCAAAAAAGCC TGAGACCCGAACACAACAGTTGCGAGAACCTAAATTAAGTTGGAATGCAACATATGAAAGTTTACTGGGGAGCAACAAGC CATTCCGTCAGCCGATTCCTCTCGCTGAAATGGTAGACTTTCTTGTGGACATCTGGGAACAAGATGGCCTTTACGATTGA
Protein sequence (LotjaGi3g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMGGCVGCYKRPTLVTTVDEPTQGLTTQGEAVKKHSTSEDFWTTSTHDMDNSAVQSQGSISSASVTNQAVVPHGVSSKS SNPTEFVNQGLNLWNQTRQRWVGPKKPETRTQQLREPKLSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 159 | 157 | 3.9E-87 | – | |
PANTHER | 3 | 159 | 157 | 3.9E-87 | – | |
Pfam | 46 | 117 | 72 | 1.6E-12 | ||
MobiDBLite | 58 | 84 | 27 | - | – | |
Pfam | 118 | 159 | 42 | 8.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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