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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0371700 |
Transcript ID | LotjaGi3g1v0371700.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin-responsive protein; TAIR: AT3G16500.1 phytochrome-associated protein 1; Swiss-Prot: sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26; TrEMBL-Plants: tr|A0A0R0IPS7|A0A0R0IPS7_SOYBN Auxin-induced protein; Found in the gene: LotjaGi3g1v0371700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76174983..76178442) extracted from Lotus japonicus Gifu genome v1.2.
GTGCACTCTTCTTATGTACCCTCCTTCTCCTTATAAAGAGGAAAGAATTTGAAAATCCTTCTACAGTTAATTTAAAAGAC AATCAATTCTGGGACGAAATTTTTGTGAGTAGCTTCAAGGTGTCAGAACTGATTCTGAAGAAAAAGAAGCTGATTCAGAT ATGCTATAAGTATGTAATAAAAGATATAATGCAAAGCTAGTCAACAATTTCATGCTACTATGTAGTTCCCTCTAGCCTCT ACTTTGGCATTTGAATGTGTCATCTTTTTATCTTGGTGGGGTGTCTCTTTAGATGTGATGAATTTTTATTTTTTGTGTTG AGCTGTTCAAGGTTTTTCACTGGCTGGTACCTAAAAAGGTTTATTGGTTCTTGTGGTAGGTGGTTCTTCAGATATCAAAG GTTCAAAGCTAATTTGTTTCAATCTAGAAGCTTGTAAGAAAGAAGCAGAACTGCAAGCAAGATGTGGAATGAAAGCCAAA ATTCTTCAGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGCCAATCAATGAAAACATGAAAAGTGTT AACAGAGAAAGAGGAGAATCACCACTCACTCTTGGTTACTCCACATGCCATCAACAACATAGTCCTCACCAGGCTAAAGC TAAAGCTTCATCATTTCTTCAGCTCTCATCAAGCCCACAGAACATGCCAGTGATTAGAAAGAACGTTTCACAACCCTGTG GTGAAGACTTGCTGAATGCAGAGAAGAATACATTTTCAATATCTTCTGCAAATACAGCAGTGCTCAATAGGTCCCAGAAA AGGTACTTTTGCTTTTATCTTGTATCTCATATTTAGAACATTTTTTCAGATTATGAATCTTTTCATAATTAATTGCAATA CTTTTCTGCATATTTGATTGAATAGCCATAACAATCCTCAAAAAGGGGAAACTTTTAGCTTTGAAACCTTGGACTCTTCA CTGATTGTATTTGTTCTGTTATGCTTCCTTGCCATGTTTGATTCAGAGATGCCTGCATTTGATTGCTGATTATTTTTGTT GCTAATCATGTTCCTTCATTGTATTGTGTTTTATTATTTTCTTTGGTCCCTCCTAGTGAAAAGTTATTTTTGCTTGTTTG TTTTTTCAATAGAACCAATTGTGAGTAGAAGTGCTAATAGCATGTTTGGATCAATTTCTCTTTTATAAATTTTGAAAATC AGAAGCTACTCTCCCCAGATTCTGGTTTTCGAATAGATTGTATGATTTCCAAACATGCACTAAAACTGTGAAATTGAGTG ATTGTAAGCTTATGCTAATATGCTATTTGTCTTTTTTTTTTTTGTATAGAGCTTATTATTTTTACTGTTAATTTTGATGT CTAACTTTGCATATGGAACCACCTAAAACAGAACTGCTTCTGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCGTGCAGG AAGAACCTTGCAAGTGGAAGCTCTTCTAAGCCGCCTTCCGGGTCCCGACAACACCAGCATCATGTGGTTCCAGACAAGGT TGCTGGTAAGAAACCTGTTGAAACCTCTGATAAAGCTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAA AAGTGGACATCAATGCTTATAACAGCTATGAAAAACTTTCCTATGCTGTTGATGAGCTATTTAGAGGCCTGCTTGCTGGT AATTTTCATGGCTTTTCATTTCAATTATCGCTAAGGTCTCACATTGACTAAAAATATGACTAAATAAGTTTATATATAGG GTAGACCAATCTTCACCGCCACTAACTTTTGGAGTAGAATTAGACCTGATCCAAATTGTAATAAAATATTGAAACCTGTG TGGTCAATTTAATTACACTGGGTGTTGACATAAACAAAGTGTAAAAAATTGTTTCTTTGAAGAAAGAAAGATAGTAACTC TTGAAAAACATTATCCTTTTGTTATCCTTTGACTAACTAGTAAGCATGTCATTAAATTCATGGCAAAATGTGAGCTAGCT TTGAAAAATAAACTTTTAAACTTGGTGTAAATGTCAACCTTGCTACAGTGCTATTTAGTATGCATTGGCTTATTTCATAG TCAATTTTTCACACCAATTTGATTTCTGTTATTCTTTTGTTCTGCTTATTAAATTCACTTCCAGAATTTGAAAATGAAAC TTGATGCAGAGATGAATTTATCTGATATTGTCTTTTCCCACTGCTGTTTTGCACCAAAAGATTCCTCAGCTGGTGGAATT CACAACAAGCTGCAGAAAGTGGAAGAGAAAGGCATAATGGGTTCTTTGATTGGAAGTGGGGAATATACTCTTGTGTATGA GGATAATGAAGGAGACAGGATGCTTGTTCAGGATGTGCCATGGCAGTAAGAATCTTACCAATGTGAATCTGATGCATTTT TATCTTAGTCTATTCAATATTATATTCCATGACTATAGTTTGAGGGCCAATGCCAAATTAACCTTTGTTTTGAAAACTAA AATGGCGCTTAGTTGTTGGATTTCTTGTGCTTAGCAATTACTATTTAATCTGTGTGTACTATTCACCTTTTTTGCTGTGC CTGTGCATAAATACCAAGCACTACATCCCATGCAATCTCAGGTGAAAACACTTGAATGACTGACTGGTTTATCCTTGAAA TACAAATAAACTGAGTGCATGTCCGGTCCGCTTATTTTTCCTGAGAATCAATTTTGGCATCTGAAAGCTACTTATAGAAG GGCCTCTGCAGAGTTGATTTTGGTTTTAGAATCAATGTCGAAAGATTTCCAAATGTGTACTTAAACCAAAATTAATTATG AGGAGAAGCTTCTGGTTGCCATAGGCTGATCCAAACATGCTTGAGCTTCTTCCAGAATCACTTTTCTCCTAACATGGAAA CATGTAGATTTTTCAAACACACACAATAAATAACTCTTGCAATTGGTTTTTCCTGATGCTATTTTGTAATTCTTTCTTTT ATGATTTGGTTATTGTTGCTTGAAAACTGTGATTGGCAGCTATGGTTATTATTATATAATTCCTTCTTACCAATGAATGT GAATGGTTGGCAACTTGGCAGCATATTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGATCAATGATTGA AGAAAGGATCATGTTCTCTTTTGGTAGTAAACAAAGAGTAGATACACCACCACTTGACTCGGCAATGAAAAATGAAGGAT ATGGGGAATTAAAGAGTTGACATTTTGGTTCTTTTCTGTATTGAAGATTAAGGAATGAAATGTTCAACTTACAAGAGGTT AAAGCATCTCGAATGCTAGATTATTAGTTCTTAACACTATTTATGTAGCTCATACTCCCACATGTGCTTAAGTAACTTTT ACCGATTTTGCTTCAATCACGGGTTCTTAGTTCTTAATTCTTAGCACTATTCATTTGGTCTCACCAATCACATTATGTAT ATTTTTTTATTTTCGTAAAG
CDS sequence (LotjaGi3g1v0371700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAATGAAAGCCAAAATTCTTCAGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGCCAATCAA TGAAAACATGAAAAGTGTTAACAGAGAAAGAGGAGAATCACCACTCACTCTTGGTTACTCCACATGCCATCAACAACATA GTCCTCACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCTCATCAAGCCCACAGAACATGCCAGTGATTAGAAAG AACGTTTCACAACCCTGTGGTGAAGACTTGCTGAATGCAGAGAAGAATACATTTTCAATATCTTCTGCAAATACAGCAGT GCTCAATAGGTCCCAGAAAAGAACTGCTTCTGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCGTGCAGGAAGAACCTTG CAAGTGGAAGCTCTTCTAAGCCGCCTTCCGGGTCCCGACAACACCAGCATCATGTGGTTCCAGACAAGGTTGCTGGTAAG AAACCTGTTGAAACCTCTGATAAAGCTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACAT CAATGCTTATAACAGCTATGAAAAACTTTCCTATGCTGTTGATGAGCTATTTAGAGGCCTGCTTGCTGATTCCTCAGCTG GTGGAATTCACAACAAGCTGCAGAAAGTGGAAGAGAAAGGCATAATGGGTTCTTTGATTGGAAGTGGGGAATATACTCTT GTGTATGAGGATAATGAAGGAGACAGGATGCTTGTTCAGGATGTGCCATGGCACATATTCGTATCAACAGTGAAGAGGCT GCGGGTGTTGAAGAGTTCTGATCAATGA
Protein sequence (LotjaGi3g1v0371700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNESQNSSEERKLELRLGPPGEEPINENMKSVNRERGESPLTLGYSTCHQQHSPHQAKAKASSFLQLSSSPQNMPVIRK NVSQPCGEDLLNAEKNTFSISSANTAVLNRSQKRTASGSVVGWPPIRSCRKNLASGSSSKPPSGSRQHQHHVVPDKVAGK KPVETSDKALFVKINMDGVPIGRKVDINAYNSYEKLSYAVDELFRGLLADSSAGGIHNKLQKVEEKGIMGSLIGSGEYTL VYEDNEGDRMLVQDVPWHIFVSTVKRLRVLKSSDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 62 | 62 | - | – | |
PANTHER | 2 | 274 | 273 | 8.3E-92 | – | |
PANTHER | 2 | 274 | 273 | 8.3E-92 | ||
Pfam | 14 | 274 | 261 | 3.7E-64 | ||
MobiDBLite | 44 | 62 | 19 | - | – | |
MobiDBLite | 131 | 159 | 29 | - | – | |
MobiDBLite | 131 | 146 | 16 | - | – | |
Gene3D | 163 | 275 | 113 | 9.0E-36 | – | |
SUPERFAMILY | 166 | 269 | 104 | 4.12E-14 | – | |
ProSiteProfiles | 169 | 275 | 107 | 21.563 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0371700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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