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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000270
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 241 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 5.489s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3373110.1
LjNin nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr2 43039240 43042638 +
4 domain predictions
1 GO term
Lj0g3v0056359.1
n.a. Auxin-induced protein [Medicago truncatula] gi|357440509|ref|XP_003590532.1| chr0 18300933 18302107 -
2 domain predictions
1 GO term
Lj0g3v0056389.1
n.a. auxin-induced protein AUX28 [Glycine max] gi|351721306|ref|NP_001236693.1| chr0 18357020 18358962 +
2 domain predictions
1 GO term
Lj0g3v0066489.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 23418810 23419502 +
4 domain predictions
1 GO term
Lj0g3v0087079.1
n.a. Auxin-induced protein [Medicago truncatula] gi|357440509|ref|XP_003590532.1| chr0 35266807 35268471 -
2 domain predictions
1 GO term
Lj0g3v0098189.1
n.a. PREDICTED: auxin-responsive protein IAA9-like [Glycine max] gi|356552993|ref|XP_003544843.1| chr0 41569353 41573356 -
2 domain predictions
1 GO term
Lj0g3v0141269.1
n.a. PREDICTED: auxin response factor 18-like [Glycine max] gi|356542623|ref|XP_003539766.1| chr0 65017807 65021728 +
2 domain predictions
1 GO term
Lj0g3v0158339.1
n.a. PREDICTED: auxin-responsive protein IAA29-like [Cicer arietinum] gi|502132393|ref|XP_004501338.1| chr0 74138840 74140473 -
2 domain predictions
1 GO term
Lj0g3v0175019.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr0 84473202 84476019 +
4 domain predictions
1 GO term
Lj0g3v0190669.1
n.a. n.a. chr0 93208877 93212663 -
3 domain predictions
1 GO term
Lj0g3v0240859.1
n.a. PB1 domain-containing protein [Arabidopsis thaliana] gi|15237703|ref|NP_201248.1| chr0 125019440 125020915 +
3 domain predictions
1 GO term
Lj0g3v0250259.1
n.a. PREDICTED: auxin response factor 9-like [Glycine max] gi|356504356|ref|XP_003520962.1| chr0 129736514 129740822 +
2 domain predictions
1 GO term
Lj0g3v0250259.2
n.a. PREDICTED: auxin response factor 9-like [Glycine max] gi|356504356|ref|XP_003520962.1| chr0 129736766 129740822 +
2 domain predictions
1 GO term
Lj0g3v0261769.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana] gi|18379168|ref|NP_565256.1| chr0 135661697 135664374 +
4 domain predictions
1 GO term
Lj0g3v0261769.2
n.a. Os01g0139200 [Oryza sativa Japonica Group] gi|297596074|ref|NP_001041976.2| chr0 135661697 135663278 +
4 domain predictions
1 GO term
Lj0g3v0268659.1
n.a. Dual specificity protein kinase pyk2 [Medicago truncatula] gi|357478457|ref|XP_003609514.1| chr0 139103742 139111675 -
2 domain predictions
1 GO term
Lj0g3v0276669.1
n.a. PREDICTED: auxin-responsive protein IAA30-like [Glycine max] gi|356533499|ref|XP_003535301.1| chr0 143585953 143587471 +
2 domain predictions
1 GO term
Lj0g3v0298829.1
n.a. Indole-3-acetic acid inducible [Medicago truncatula] gi|357479657|ref|XP_003610114.1| chr0 155303041 155304995 -
2 domain predictions
1 GO term
Lj0g3v0315899.1
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952404 164954158 +
3 domain predictions
1 GO term
Lj0g3v0315899.2
n.a. Octicosapeptide/Phox/Bem1p family protein [Theobroma cacao] gi|508773624|gb|EOY20880.1| chr0 164952458 164953006 +
3 domain predictions
1 GO term
Lj0g3v0342589.1
n.a. PREDICTED: auxin response factor 5-like [Glycine max] gi|356552071|ref|XP_003544394.1| chr0 179616614 179622968 -
2 domain predictions
1 GO term
Lj0g3v0342589.2
n.a. PREDICTED: auxin response factor 5-like [Glycine max] gi|356552071|ref|XP_003544394.1| chr0 179616614 179623303 -
2 domain predictions
1 GO term
Lj0g3v0343839.1
n.a. PREDICTED: auxin-responsive protein IAA12-like isoform X1 [Cicer arietinum] gi|502114816|ref|XP_004495058.1| chr0 180300603 180305000 -
2 domain predictions
1 GO term
Lj0g3v0358659.1
n.a. nodule inception protein [Lotus japonicus] gi|6448579|emb|CAB61243.1| chr0 188832157 188835627 +
4 domain predictions
1 GO term
Lj0g3v0359119.2
n.a. PREDICTED: auxin response factor 4-like [Glycine max] gi|356544621|ref|XP_003540747.1| chr0 189045101 189046458 +
2 domain predictions
1 GO term
Lj1g3v1452940.3
n.a. PREDICTED: auxin response factor 2-like [Glycine max] gi|356508865|ref|XP_003523174.1| chr1 17415300 17416836 +
2 domain predictions
1 GO term
Lj1g3v1452940.4
n.a. PREDICTED: auxin response factor 2-like [Glycine max] gi|356516493|ref|XP_003526928.1| chr1 17415338 17416836 +
2 domain predictions
1 GO term
Lj1g3v1500470.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cicer arietinum] gi|502133303|ref|XP_004501712.1| chr1 17892236 17907543 +
4 domain predictions
1 GO term
Lj1g3v1500470.2
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356508821|ref|XP_003523152.1| chr1 17892661 17907543 +
4 domain predictions
1 GO term
Lj1g3v3466110.1
n.a. Os12g0594300 [Oryza sativa Japonica Group] gi|297613457|ref|NP_001067178.2| chr1 40325643 40337136 -
3 domain predictions
1 GO term
Lj1g3v3466120.1
n.a. n.a. chr1 40332056 40336474 +
3 domain predictions
1 GO term
Lj1g3v4450490.1
n.a. RecName: Full=Auxin-induced protein 22E; AltName: Full=Indole-3-acetic acid-induced protein ARG14gi|2224733|dbj|BAA20849.1| Aux22e [Vigna radiata] gi|11131105|sp|O24543.1|AX22E_PHAAU chr1 52202931 52204410 -
2 domain predictions
1 GO term
Lj1g3v4450520.1
n.a. PREDICTED: auxin-induced protein AUX28-like [Cicer arietinum] gi|502109838|ref|XP_004493739.1| chr1 52222542 52226749 +
2 domain predictions
1 GO term
Lj1g3v4528360.1
n.a. PREDICTED: auxin-responsive protein IAA11-like [Glycine max] gi|356545900|ref|XP_003541371.1| chr1 53290640 53293239 +
2 domain predictions
1 GO term
Lj1g3v4579590.1
n.a. Auxin response factor 19 [Theobroma cacao] gi|508715941|gb|EOY07838.1| chr1 54683568 54687515 -
2 domain predictions
1 GO term
Lj1g3v4764520.1
n.a. PREDICTED: auxin response factor 2-like [Glycine max] gi|356570939|ref|XP_003553640.1| chr1 57361694 57367804 -
2 domain predictions
1 GO term
Lj1g3v4764520.2
n.a. PREDICTED: auxin response factor 2-like [Glycine max] gi|356570939|ref|XP_003553640.1| chr1 57361694 57371327 -
2 domain predictions
1 GO term
Lj1g3v4830140.1
n.a. PREDICTED: auxin-responsive protein IAA20-like [Glycine max] gi|356505689|ref|XP_003521622.1| chr1 58269777 58273528 +
2 domain predictions
1 GO term
Lj1g3v4984100.1
n.a. PREDICTED: auxin-responsive protein IAA16-like [Cicer arietinum] gi|502117384|ref|XP_004495802.1| chr1 60641768 60644700 +
2 domain predictions
1 GO term
Lj1g3v4984100.2
n.a. PREDICTED: auxin-responsive protein IAA16-like [Cicer arietinum] gi|502117384|ref|XP_004495802.1| chr1 60642329 60644700 +
2 domain predictions
1 GO term
Lj1g3v5035080.1
n.a. PREDICTED: auxin response factor 18-like [Glycine max] gi|356504181|ref|XP_003520877.1| chr1 61640948 61645434 +
2 domain predictions
1 GO term
Lj2g3v0694630.2
n.a. PREDICTED: probable serine/threonine-protein kinase tsuA-like [Cicer arietinum] gi|502163583|ref|XP_004512883.1| chr2 11122553 11125443 +
4 domain predictions
1 GO term
Lj2g3v0824590.1
n.a. PREDICTED: auxin-responsive protein IAA27-like [Glycine max] gi|356531293|ref|XP_003534212.1| chr2 12865784 12869593 +
2 domain predictions
1 GO term
Lj2g3v0824590.2
n.a. PREDICTED: auxin-responsive protein IAA27-like [Glycine max] gi|356531293|ref|XP_003534212.1| chr2 12865784 12869593 +
2 domain predictions
1 GO term
Lj2g3v0914370.1
n.a. PREDICTED: auxin response factor 25-like [Glycine max] gi|356520887|ref|XP_003529091.1| chr2 14189197 14195675 +
2 domain predictions
1 GO term
Lj2g3v1195240.1
n.a. PREDICTED: auxin response factor 8-like [Glycine max] gi|356539752|ref|XP_003538358.1| chr2 18922804 18932974 -
2 domain predictions
1 GO term
Lj2g3v1468200.1
n.a. PREDICTED: auxin-responsive protein IAA8 [Glycine max] gi|356496563|ref|XP_003517136.1| chr2 23351431 23356167 +
2 domain predictions
1 GO term
Lj2g3v2135880.1
n.a. PB1 domain-containing protein [Nicotiana benthamiana] gi|213868273|gb|ACJ54183.1| chr2 32286853 32288806 -
3 domain predictions
1 GO term
Lj2g3v2147100.1
n.a. PREDICTED: auxin-responsive protein IAA9-like [Glycine max] gi|356552993|ref|XP_003544843.1| chr2 32385540 32390017 -
2 domain predictions
1 GO term
Lj2g3v2878430.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508720006|gb|EOY11903.1| chr2 37484110 37486925 +
4 domain predictions
1 GO term