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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0373900 |
Transcript ID | LotjaGi3g1v0373900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vacuolar protein sorting-associated; TAIR: AT5G53530.1 vacuolar protein sorting 26A; Swiss-Prot: sp|Q9FJD0|VP26A_ARATH Vacuolar protein sorting-associated protein 26A; TrEMBL-Plants: tr|A0A072TM21|A0A072TM21_MEDTR Vacuolar protein sorting-associated protein 26A; Found in the gene: LotjaGi3g1v0373900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76604383..76609464) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGAGAGTTGTTTTGTTGGGTGTTCATGTTTTGGTTCTATACCTGTTGTGCATGAATTCTAACCTGTGCTTTCTTGA TATGGTGATGGCTGTGACTGTCCGCACGGATTTACCTTTTTTGGAAATTGTAGAATTACCTTCTTGGAGCTTTCAAGCCG GCATGCAATGTCGTGATCACGTTTAACGATGGGAAAAACCGGAAGCAGGTGAACCCCCATTCCCCTTTTTTATCCCCAAT TATGGCAATTGCATTCATGATTTTTGTCAAGGATACAGTGTTGTCAAATAGCGGTTATTGCAGCGCTATGAGGGCTTATC GCTATTCCACTATTTTCCGCCATGAGGGCTTGAAATGGTGGATGTTTGGCTTTCCGCTATTTTCCATGACCCGCGATTAG CAACAGTGCAAGGACGATGCCAGTGAAAGTTCATAGTTCTAACTTCTTTTGATATTTATCATTGTACTACTAATGATTTC AAATCTAAATTATTTGGGCTTTCTGCCGCATCATTACAGTGATTTGTATATGTTTTATGCGGTTTTATGATATCCTTTCT GTGGTTTGTAGGTGCCATTTAAAAAGGAAAATGGTCAAGCAGTTTCAGTGCCACTTTTCCAAAGTCAAGAAAACATTGCT GGGAAGGTATATTTTTAGTTATTAATTTTTGTGATAATTTATTATTATGTTAAAGACACGGTGTTGTTGTTGCAATAGCT TGAAATATCGTGTCTTGTGACACTTACTGTATTGACTAATTGTGTATTTTCTACCAAGTTTAGATTACAATAGAACCAAT GCAAGGGAAGAAGATTGATCACAATGGCATAAAAGTTGAGCTCCTTGGACAGATAGGTCTGTACTTGACTAATCTTTCTA TCTCTTCAATGTGTTTTGTGTGTCTCTCAAGTAAGTAGAGGTAAATAGATAGGAGGAGAAGAAAAGATTATTGTTTAATA CTTTTTTCGCTGGGATACTTTGTGATGAGCATATTATGATGGCACTGTTCTATTCTACTTTATAGCATTTTGGTGTAATT GCTTAAAGGAGTTTAGTAGTTTACCTTATCAATTGTCATTCCAAGTATATGATTCTCCATTTCTTCTGAAAGGAGTTTTT CTTAATTATATTATTTTTTGTGTTTGGCTTTTTGTATCATGAAGCTCATTACTGGTCTCCCCTCCCTCCCTTCTTACATA TTGATTTCAAGCGTGTTTCTTGAAATTTCTAATAATTGAAGGCAGAAGAACTTATTTCTTAATACACACAAGGAATTTGA GAATTTTAACTGTAACACTGCAGCGGAAGCAGTCCCTGTATGCTTAAGTTAGGTTGTTAAATTGACCATTGATAAACAAA AACAGCTTCATTGGGAGGTATGTATGGAGTTGAAAACTGTGGCGAGTGTTGATAGAGGGGATTTAACGGAGTGGGTCAGT GAATTTTAGTTAATGGCTTATGTGGAAGTAATAATCCGCGTGTTTTGTATTTTGATTGGGCAAAAGTATTAACAGCACCT ATAGTACCGTGTGTAAGTTGTCCTTATAGAAAATGTTTTCTTTCAATTGACCCATTTTTTCTCAAGGATCTGTAGATGAA ACTGAAATGATCTTCATGACATTGAGGATCATGCTCAAACTTGGGCACTTCAGTTTTAATTTTACAATGCTGTAACCTAA ATTTTTTTTGGTAATAACTGGCAAAGGAAAAAGATTTTCCAGTCATCAAACATATTTAATTGTTATTCCTTTTACTTTGG AATTTTTTTTCTGTTTATGACTTATCTTTTTTTATTTCATTACTGATACAAAGTTCATTCTAAATTTTGTTTTTCTCTGC AGAGATGTATTTTGACAGAGGAAACTTTTATGACTTTACTTCCCTCGGTAACTGATTCTGTCACTTTCATTCTTAAATTA AAGTATTCTACGTGATTGCAGTTAACCTTTCATTTAATGCTGAATCACTTACTGCTAGGAAATAATTTCTATTTTGCTGT CTTTTGCAGTACGAGAACTTGATGTTCCTGGAGACATCTATGAAAGGAAAACATATCCCTTTGAATTTTCTACTGTTGAA ATGCCATATGAGACATACAATGGGGTGAATGTGAGGCTTAGGTGTGAAATCTCGAAGATCCATGGACTTCTCAGTTAAAG TTTTGTGCATGTGCTTTTTTGTTTATTGTCATTCTGGAACATTGCTTTGCAATTAATAGAAATGGGGAGCTTGAATACAA TATAAATGTGAAGTTTATTTGCCTTTGTGATTTCCAGGTATGTCTTGAAAGTGACCATTAATCGTGGTTATGCAGGAAGC ATAGTAGAGTACCAGGATTTTGTGGTATGTTGTCAATTGGTAACATAGAATTATGATTTATGGTCTTGGATATTGGGTTG AATATTACTTTATCAAATCAATCCGTTTGGATAATACTGTGTTGGATGTAGTTGTAGAGACTACTTTTACTTAGAGATGG CTATCCCCACACCCAAAAAAGCTTGTTTATATGATCATATCACTCCTAAATTAATTTCCAGTTGGCACACCTATAATTTT ATATTTTCCCCTGAGTACCATCCTATCACCCCTTTACAAAGTCTGTTCACGTGCGTATATGTTAAATTCATTGGTATAGT TTATTATCTTATTTCATCAACTTACTTTATCATCATTGGTCAGGTCCGCAACTATTCTCCACCCCCGCAAATTAACAATA GCATCAAGGTGAGCTCAATAACATGGCAAGTAAATTTTAGCGCTGCTTAGCTCAAATTCACTGCCATCATATAAGCTGCA TAGAGATAGTAATTCATGCTCACTACTTTCCATGAATTAAAACAGTAGTGATCCTATCCAATGAATAGGTGTACTTGTGT CACCAACCTTCTTTTCAATTACTCATAAATATGGTATCTTGAGAAAGATAGTTCTGTATTAACTGACTATAGGCCTGAAT CAACTGAGTTCAGGGCTTGATATAGGTCTGCATACAAGTGTAAAAGAAAACGAGCCTCCTAGGAAAATTTGAGAGTGCAC GGCTTTCTCCCTTGCTTTTATTCTCTCCCTCATTGTAACAGACACACACACACACACTCCCCCTGGCAACTAGGCAGTTA GTTATGCTATTCTCCCTCCTAGAACTGATCAGGTGCATCACACCTTTATCCCCCTCCTCACATGCATTTAAGTGACTTTG GGCTTGGGTCCGCATCGTTTCTGCAGGCACATTTATTTATTGACTTGTGCTTTGCCTTGTTACTTTGTTATTGGCTGCTT CTATTTCTTATTAAATTTATCATGATATTATTACCTTGTACAGATGGAAGTTGGAATTGAAGATTGTCTACACATTGAAT TCGAATACAACAAAAGCAAGTAAGTTGAATGTTTTGGTTGAACATTTGTCTTGAATTATGTCCACTTTTATGTCCTTTTT TATCATGTTATTTATCTTATCAGCTACCAACTTGTGTTCTATGCCGTTTCTCTTTACTGCTTCAGATATGAAATATATTT GTAGCTTAATCTTGTTTAGTTGTACTGGCCTGGAAATTTCTAATTCCAATCCAACTTGCGTGTTACGTATTGAGTATAGC CAATAATCCCTAGATAATTAGGCAGGTATCTGTGCCAGAAGTATATTTGTCTAAAACTAACACTGTAGGCTTTTTATACA CTGGTTTGAAAAGAATATTTTTGACATACTCTAATTTATATTTTACATGTGAAAGGGAATTAGATCAGACATTATATGTT GGATTTTCAATTTTTCAGGTATCATCTGAAAGATGTCATTATTGGTAAGATATATTTCTTACTTGTCAGAATCAAGATAA AAAACATGGATCTTGAGATTAGACGTCGAGAATCAACAGGATCTGGGACCAACACCCATGTTGAGACAGAAACATTGGCT AAATTTGAGTTGATGGATGGTGCTCCTGTCAGAGGTAGGCTAACCTTGAAATTGGATGAGTAAACTATTGATTTTGTAGT TTCTGTATACATATTAATTTTGATCCCATAATAAAAATTTGGCTTAATTGGGCTTTTGATCCCTCTAGTTTGGACTATGT TATTTTAGCCCCCCAATAAATTTTTGAGCAGATTTAGCCCCTTGAATTTTCAACTGTTACCATTAAGGTTCTCTGTCACT ATTATTCTATTTAAAACTCCCAGATTCTCATTTTAAGAGAAATCTTCACAAATTATAATCAATTTAATCATTGTAGATGT TATTCCCATCAAAACTCACTAGTCAAAGTATGAAATTTCAACAAAAAATAAAAAATTCTCAATTCTCCTCTCTTCAAACC CTAATCTCATCCTGCAATATTTGACAAGAAAATGAAGATTTTATGATTTTATGCAGAGAATGATCAAATTTTCTTAATTT TAACAGTAGAGGAACTTGATCAACTCGAAAAAAACTCGGGGGGGCTCAAATCACACACGGTCCAAAGTCCAAACTAAGGG GACAAAAAATGCAATTAAGCCTGCAATATTAGATCTATCATCTATGTTTTGATATCCTTTTGGGGAAACTAATAAAATAA ATTTTCTGTGTCTGAGCAATAGTAAATATTGGATCCATCAATAAAAATTTCATATAAAACAGTTTTGTGAAATAAAGATT AGGGGTCTCATGAGACATAGTCTCCTTTGTGTTCTCACTCCTTTACCAGAGAGGTGAAGATGTTGCACTGGTTTTGCGTT TTATATTGCATATATAAATGACCTTCGTTTAAAATGAGAGAACTTAAGCAAGCAAAAAAAAACAAAAGTTAGGAAGGAGG ATTATATCTTGTTTTTGCCATTAGCAACTCAAATTAGTTGAGGCAATTTTTTTGGCCGCAGGACTTCAACTATATAAAAA AGTTTCACTTTTTGTTTTTACAGGTGAATCAATCCCAATCAGACTGTTCCTCAGTCCTTATGAGCTGACACCAACCCACC ATAACATTAATAACAAATTCAGTGTGAAGTACTTTTTAAATCTTGTGTTGGTTGATGAAGAGGACAGGCGGTACTTCAAG CAGCAGGAAATCACAATGTACAGGCTGCAAGAAACTTCGTGA
CDS sequence (LotjaGi3g1v0373900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTACCTTCTTGGAGCTTTCAAGCCGGCATGCAATGTCGTGATCACGTTTAACGATGGGAAAAACCGGAAGCAGGT GCCATTTAAAAAGGAAAATGGTCAAGCAGTTTCAGTGCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTACAA TAGAACCAATGCAAGGGAAGAAGATTGATCACAATGGCATAAAAGTTGAGCTCCTTGGACAGATAGAGATGTATTTTGAC AGAGGAAACTTTTATGACTTTACTTCCCTCGTACGAGAACTTGATGTTCCTGGAGACATCTATGAAAGGAAAACATATCC CTTTGAATTTTCTACTGTTGAAATGCCATATGAGACATACAATGGGGTGAATGTGAGGCTTAGGTATGTCTTGAAAGTGA CCATTAATCGTGGTTATGCAGGAAGCATAGTAGAGTACCAGGATTTTGTGGTCCGCAACTATTCTCCACCCCCGCAAATT AACAATAGCATCAAGATGGAAGTTGGAATTGAAGATTGTCTACACATTGAATTCGAATACAACAAAAGCAAGTATCATCT GAAAGATGTCATTATTGGTAAGATATATTTCTTACTTGTCAGAATCAAGATAAAAAACATGGATCTTGAGATTAGACGTC GAGAATCAACAGGATCTGGGACCAACACCCATGTTGAGACAGAAACATTGGCTAAATTTGAGTTGATGGATGGTGCTCCT GTCAGAGGTGAATCAATCCCAATCAGACTGTTCCTCAGTCCTTATGAGCTGACACCAACCCACCATAACATTAATAACAA ATTCAGTGTGAAGTACTTTTTAAATCTTGTGTTGGTTGATGAAGAGGACAGGCGGTACTTCAAGCAGCAGGAAATCACAA TGTACAGGCTGCAAGAAACTTCGTGA
Protein sequence (LotjaGi3g1v0373900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYLLGAFKPACNVVITFNDGKNRKQVPFKKENGQAVSVPLFQSQENIAGKITIEPMQGKKIDHNGIKVELLGQIEMYFD RGNFYDFTSLVRELDVPGDIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTINRGYAGSIVEYQDFVVRNYSPPPQI NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAP VRGESIPIRLFLSPYELTPTHHNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQETS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 299 | 299 | 3.9E-199 | – | |
PANTHER | 1 | 299 | 299 | 3.9E-199 | ||
Gene3D | 2 | 156 | 155 | 7.6E-55 | ||
Pfam | 8 | 283 | 276 | 6.6E-124 | ||
SUPERFAMILY | 46 | 161 | 116 | 9.8E-5 | ||
Gene3D | 157 | 301 | 145 | 5.1E-78 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi3g1v0373900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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