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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0393200 |
| Transcript ID | LotjaGi3g1v0393200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G01430.1 TRICHOME BIREFRINGENCE-LIKE 25; Swiss-Prot: sp|Q84JH9|TBL25_ARATH Protein trichome birefringence-like 25; TrEMBL-Plants: tr|A0A151UEW7|A0A151UEW7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0393200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79215073..79218192) extracted from Lotus japonicus Gifu genome v1.2.
TATCAGTTAAGACTTTTCAAAATAATACATATTCACAACAAATAGTAATTAATTATTTATGTATTTAACATTACTCTTTT AAATAAATATTTTTTCTTTATTAATTTCTTAATCAATACTTTACAAAAAAAGTTCTGGTTAGCATAGCAAGAACTAACAC TTTTATCATAATTGCTCCCATTTCCCTATCATAACACCAACCTTGGTTTGTCCTGTGAAAGTAACTTAGTTGTTTCTTCT GCTACAAGCCTACAACTTTTGTTTCCTCTAAGTGGTTGTGTTGGTCACTCTGCTTCTAATACCAGATGGTGAAGAAAATG AGGTCTGATTTGGGCCCATTTTCCCTGCAAAAGCACAACCATGTATGTGCCAAGTTTGCAGCATCATTTTTCTTGGTGGG TCTCGCTTTTCGCCTTCTCTTGTGGGATTCATTCAGCTTCTCATCATCACTAGTGAAGAAGACACTACCACCTCCTCTTG CAGAAGCAAAAGCAGAGTCCCCTGTTTTTTCTTTACCTCTTCAGGCATCTGATTTTGTTGAATTTCCAGGATACAACCAG AGCCAAACCTCTCAGGATGGTAAGAAACATTTTTTTTTATGTGCTTGAGGTGAATAAAAATTTCAATGGAGACATGCATA TGGTTTCAAACTGCAGACTGATTTTGGAGTTACTGCATTGCTATTAGGATTGCAATTAAGGTCGCATCAACCAGCATTTG TTTGCAATTCCGTGACACAGCGGCAACCGTGATCGCAATTTAAAACTGCATGAACTGCAAATCTTCATGGACTAATGTGA GTTAAAAATATTTTTCTTGCAGAGAAATGTGATCTTTTTGTGGGAGATTGGGTACCAGATCTATCTGGTCCAGTTTACAC CAATGAGAGTTGCCAAGTGATTGAACACCATCAAAACTGCATGAAGAATGGACGCACTGATTCAGGGTACCTTTACTGGA GGTGGAAGCCACGACACTGTGAGTTACCAAAGTTCAATCCAAAGAATTTTCTCAATTTTATGAGAAATAAAGCAATGGCA TTTGTTGGTGATTCCATCTCCAGGAACCATGTGCAGTCCCTACTTTGCATTCTCTCACAGGTATGGTGAATTTCTCTGTC TGCTAACCAATTCACAACTTTGATAATATGCATAGCTTTTTGGTTTGAAAGATTCTTTTCTTGATTAGTGTGAGTTGGCC TACTCTTTTTTTTTTTTTTTTGCTTTTGCTTCACTCCACTTTCTATGGCTTGCCAATTTTTTAGAAATATATCAGTATGA CAAGATCTTTGTTGGGGTTTTTTTTTTGAATTTAAATATAGTAAAAACAGATTCCAAGAATTTAAAATGACTCATGAGGC CATTTGATTGTATGATATGAGGCACATACATTGTTTATGGAGTTTCTTGTCCATTGATCATGAAGCGTAGTGAAAATCAA TCATGTAAGAGTTGTTTTCAGATTATGACTTGTGAGTTATGAGCATTAAGATTCAACAGATTAAATTGCACGCCATTTCA TTGGTGGAAGACAGTTGGTGCATTATATCATATGGTTGGTCCATTGTCTTCAAATAATTTAGCTTCTAAAAAGTATGGAA ACAGGAAAATAACATATTTCATGGCACTTTTGTTGAAGTAGCAAGTTGTTATTTCAAAAAAAAATTTGCCTTGGGATGTG TTATTTCTCATTTTCATACTATCTAATGGTAAATCAAACAAACTCTTAGGTTCTTTGCCAAGCATTTTCTGTTGATTATT TGTTTGCTACATTGATAAAAAAAATAGTGTTTCGAAATGTGTTATTTTCTTATATTCATACTTTCTAATGGTAAACCAAA TAGAGGCTCGTTGTCTTTTGCCAAGCATTTTCTGTTGATTTTTTGTGGCATGGTGCATTTTCTGTGGTTAATCATTAATT ATTTTGGTCCTACAAATTGAGTATTAGATCATATATTCATATTCTAATGATTTCATTCTACAGGTGGAACCAGCTGTTGA GGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTCCCCTCTCACAACTTCACACTCTCAGTAATTTGGACCC CTTTCCTTATCAAAGCAGCTATATTTGAAGACATGAATGGGGTAACCTCTTCAGAGATTCAGCTTTCTCTTGACAATCTC GACACCTTATGGACCAATCAATATAAGAATTTCGATTATGCGGTAATTGGTGGGGGAAAATGGTTTCTCAAGACTGCAAT ATACCATGAAAACAACACAGTCACAGGCTGCCATTACTGTCCTGGGAAGAATCTAACAGAGCTAGGATTCGACTACGCAT ACCGCAAAGCACTAGAACTTGTTTTCAACTTCTTCACAAGCTCTGATCACAAAGCCACTGTTTTCTTCAGAACCACCACA CCTGACCACTTTGAGAATGGGGAGTGGTTTAGTGGAGGGTATTGTAATAGAACCGTGCCCTTCAAAGAGGGTCAGATAGA TATGGTTGATGTAGATTCCATCATGCGAGGTATCGAAGTAGAAGAATTTGAGAAGGCGAATTCGCAAGGATCTGAACAAG GGGTGAAGTTGAAACTCTTGGACACAACTCATCTTTCATTGTTAAGACCGGATGGACACCCAGGACCTTACCGGCAGTTC CAGCCATTTGCAAAAGATAAGAATGCTAAAGTTCAAAATGATTGTCTACATTGGTGTTTGCCGGGACCAATTGACTCATG GAATGACATAGTAATGGAAATGCTAGTCAATTCTTAGTGTACGTTGGAATACACGATGAAAAGTTACAGTGGACAGCCAC TAAGTTAAGAGAAGTGTCCAGTCCACTGTGATTTTAGTTCACTATGGTTTTCCGCCGTGTACCCAAACATGCATTTAGTA ATGTTAGAAATTCATGATGAGAATAATTTGTCAATAGATCACCATTGTTTACAACAATGATAATTTAAAGTTCACGATTC TTTGCTATAGAGTAGTTTCTTCATCCAAGTCCATTAAGTTGAGCTCCATTCAATGCACGGAATTGTATAGCATAAGCAAG GCTTGTAAAGCACTAATGAGGACACAACAAATTGTTGTGTTACAGAACAAAGGTGTAAACCGCAGCACTTGATTCTAAAC
CDS sequence (LotjaGi3g1v0393200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGAAAATGAGGTCTGATTTGGGCCCATTTTCCCTGCAAAAGCACAACCATGTATGTGCCAAGTTTGCAGCATC ATTTTTCTTGGTGGGTCTCGCTTTTCGCCTTCTCTTGTGGGATTCATTCAGCTTCTCATCATCACTAGTGAAGAAGACAC TACCACCTCCTCTTGCAGAAGCAAAAGCAGAGTCCCCTGTTTTTTCTTTACCTCTTCAGGCATCTGATTTTGTTGAATTT CCAGGATACAACCAGAGCCAAACCTCTCAGGATGAGAAATGTGATCTTTTTGTGGGAGATTGGGTACCAGATCTATCTGG TCCAGTTTACACCAATGAGAGTTGCCAAGTGATTGAACACCATCAAAACTGCATGAAGAATGGACGCACTGATTCAGGGT ACCTTTACTGGAGGTGGAAGCCACGACACTGTGAGTTACCAAAGTTCAATCCAAAGAATTTTCTCAATTTTATGAGAAAT AAAGCAATGGCATTTGTTGGTGATTCCATCTCCAGGAACCATGTGCAGTCCCTACTTTGCATTCTCTCACAGGTGGAACC AGCTGTTGAGGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTCCCCTCTCACAACTTCACACTCTCAGTAA TTTGGACCCCTTTCCTTATCAAAGCAGCTATATTTGAAGACATGAATGGGGTAACCTCTTCAGAGATTCAGCTTTCTCTT GACAATCTCGACACCTTATGGACCAATCAATATAAGAATTTCGATTATGCGGTAATTGGTGGGGGAAAATGGTTTCTCAA GACTGCAATATACCATGAAAACAACACAGTCACAGGCTGCCATTACTGTCCTGGGAAGAATCTAACAGAGCTAGGATTCG ACTACGCATACCGCAAAGCACTAGAACTTGTTTTCAACTTCTTCACAAGCTCTGATCACAAAGCCACTGTTTTCTTCAGA ACCACCACACCTGACCACTTTGAGAATGGGGAGTGGTTTAGTGGAGGGTATTGTAATAGAACCGTGCCCTTCAAAGAGGG TCAGATAGATATGGTTGATGTAGATTCCATCATGCGAGGTATCGAAGTAGAAGAATTTGAGAAGGCGAATTCGCAAGGAT CTGAACAAGGGGTGAAGTTGAAACTCTTGGACACAACTCATCTTTCATTGTTAAGACCGGATGGACACCCAGGACCTTAC CGGCAGTTCCAGCCATTTGCAAAAGATAAGAATGCTAAAGTTCAAAATGATTGTCTACATTGGTGTTTGCCGGGACCAAT TGACTCATGGAATGACATAGTAATGGAAATGCTAGTCAATTCTTAG
Protein sequence (LotjaGi3g1v0393200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKKMRSDLGPFSLQKHNHVCAKFAASFFLVGLAFRLLLWDSFSFSSSLVKKTLPPPLAEAKAESPVFSLPLQASDFVEF PGYNQSQTSQDEKCDLFVGDWVPDLSGPVYTNESCQVIEHHQNCMKNGRTDSGYLYWRWKPRHCELPKFNPKNFLNFMRN KAMAFVGDSISRNHVQSLLCILSQVEPAVEVYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKAAIFEDMNGVTSSEIQLSL DNLDTLWTNQYKNFDYAVIGGGKWFLKTAIYHENNTVTGCHYCPGKNLTELGFDYAYRKALELVFNFFTSSDHKATVFFR TTTPDHFENGEWFSGGYCNRTVPFKEGQIDMVDVDSIMRGIEVEEFEKANSQGSEQGVKLKLLDTTHLSLLRPDGHPGPY RQFQPFAKDKNAKVQNDCLHWCLPGPIDSWNDIVMEMLVNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 15 | 440 | 426 | 2.4E-195 | – | |
| PANTHER | 15 | 440 | 426 | 2.4E-195 | ||
| Phobius | 20 | 40 | 21 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| Phobius | 41 | 441 | 401 | - | – | |
| Pfam | 92 | 145 | 54 | 7.3E-23 | ||
| Pfam | 146 | 437 | 292 | 2.1E-92 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0393200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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