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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0412100 |
| Transcript ID | LotjaGi3g1v0412100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 87A; TAIR: AT1G72480.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A; TrEMBL-Plants: tr|I1MK24|I1MK24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0412100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81631788..81634686) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTAATTAGTAGCAATTGTTATAGGAAAAATCCCAACTTGTTGAATATTTCAACGTGTGAAATATACAATCTTACTTG TCAGATTTGGAAAGTGAAGTTGCTGGGATACTCATAGAATTTCCACAAATTTGATGAAAACTGTTTCGCTGTCGGTCCCG AAACATGACATGTCTCTTGTATACCACTGTTAGCCATTGTTTTGTATTTGTGCTATCTTGGTGATTATGCTGATGGTTTA TATATACTGTTTTGTTGATTGGATTTTCCTGTTGTAATGTGGAAACCAGGTTTGATAGAGTCACATTCCGTAGAACGAAG GAATTCTCAAACTTTAGCTCGTGGCCTATTCAAGCTGTTGTTTTTGAGGTTGAAGATAGAGAGACAATTGGTGGTTCAGC GTATGGGGGTCAAAGGGCTGTCTGTTGCACCGGTGATCTAGCAAAACTCGGTGTGTGTGCTGAGGGGCAGGTAATTTACC GCCCTTCTCAGGTGAATTCTGATTGGCCTAAAGTTTTTGGTGTCCCTTTTGAAACGGATGATGAAGTAGCAGTGCTGCCG ACGAAATCAATACAAATCACGAAAACTGGGATGTATAATTTGTATTTCATCCATTGTGACACAAGGCTTAAAGATTTGGC TGTAGAAGGGAAAACTGTATGGAAAAATCCCTCTGGCTATCTTCCTGGTAGAATGGCACCTATGAAAATTTTCTACCAGT TCATGTCTTTTGCATTTGTGTTGCTTGGGCTCTTTTGGTTCTATCAATATGTTAGATTTTGGAAGGAAGTATTTCCACTG CAGAACTGCATTACCCTAGTGATAACCCTTGGCATGTTTGAGATGACTCTGTGGTACTTTGACTATGCTGAATTCAGTGA GACTGGAATCAGGCCAACTGGGATAACCATATGGGCTGTCACCTTTGGTACCGTTAAGCGAACCGTGGCACGTTTGATCA TTTTAATAGTAGCAATGGGCTACGGTGTTGTGAGACCTACCCTTGGCGGCCTTACATCAAAGGTTATTATGCTTGGAGGA ACCTTCTTTGTCGCATCTGAAGTTCTTGAGTTGGTGGAACATGTCGGTGCCATAAGTGATCTTTCTGGAAAGGCAAAGCT TTTTTTGGTTCTTCCCTCTGCTGTATTGGATGTGTTCTTCATTCTTTGGATTTTCACCTCACTCTCTGCAACTTTAACTA AGCTTCAGGTAAACTTGAAATGGGCTGCAAAATTCTTTCTTTCTTTGGTAAACTTGTTATCCATAATTTTCCCCTTGTTG GTTTTTGTTAAAGCACTCTGTATGAGACAGATATCAGGAGGGGTATTAGAATCTGTTTCTTCAACTTAAAGTGTCTTGGG ATGTGTTATTTTCCTGTTTTCATACCCTCTAGCGGAAAACCAAACGGGCTTTAGAGTTGGTAGAAATATATATGATGTGG CAACTCTAGAACTGAACTCCTATCAGTTTCATTTGTGATTAATAAACCATGATGTAAAGGTAGATAGGCTTAAGTTACTT GAAGTAATAAAGGAAAGGAAGGATCTTATACAAATATAGTTTTTGCTATTTGTATTTTTCATGTTTGATATTTCCTGGCC TGTTATGATATACTGCCAAAGAATAAGTATTATTGGCAATTTATAGTGTTTAGTAAAAACACGGGATATTCTTTCCTTTC CAACTTTGAACTATCAGACCCTGATGATCTTACTCTATAAATCCTATTCTGCTTTATAGCTTTTATATAAATTAGGCTGA TTTGCTTAGACTTTTATGTGATGGTGCATCACGTGTGAATTAGTGAGAAAATTAGTAAGTGAGTTAGTTAGTTAGTTAGT AGGTTATAAAGATAGTTTTTAATTAGCTCTTTAGTTGCTGTCATTTTTACTGTTTTTAGAAGTTAGTTAATATTGTTAAC TCTTCTATATAACATAGTTGTGTAACTCATTCCTGATTTAATGAAGAATACAGTTTCCTTTTCTCTTCTACACTGTTTTC TCTGCTCATTTTCATATCACGAACGGTGATGAATGACAAATCACTGTCATGACTTAACTAATCTAAAGATGACACTTCTC TGTTTATGCAATGTGACAGGCAAGAAGGATGATGATAAAATTGGACATGTATAGGAAGTTCACTAATGCTTTGGCAGTTG CTGTGATCGTATCTGTCGGCTGGATATGTTATGAGGTAATCCAAGGCAGAAACGCATTTCAATTAATTTGTATGTTAACT AGGCCTAATTATGATAGTGAAGTCCAGGTCATTGGTCTATGTAATCTGTGGATTCAGATGCTATGAACAAATTAAAATGA GCTGCAAAGTTTTGATCTAGAATAGACCAGGAAATTTGCTACACAAAAGATGTTATTTGCTTGTTTCTAAATTCAATTCA TCCATTCAGTGTTGGTTATTCTAGTCCTTATCTTTATATTTTCTCTTTCAGCTTCATTTCAAATCAAATGATGTATACAA TGAGAGATGGCAGAATGCATGGATCATCCCAGCCTTTTGGCAAGTTCTGTCTTACTCTCTCCTGTGTGTTATCTGTGCTC TTTGGGCACCATCTCAAAATTCAACAAGGTAAAAACAAAACCTCTATCTTTTAGTTTTTCTGCATCTTTAATGTCTAAAG GGAAAGATTAGCTTTCTCTTCTATGCTCCAATGTCCATCTACACTATTTGTTTCTCATTGTTGTTGTTCTGTTCTTGACA GATATGCGTACCGTGGTGATGATGGAAGCGATGAATTTGATAGGGATGAAACTACTTTGACGCTCATTAAACCGGCATCT ATTTCTGCAAAGGATGTTCGAATTGTGCCAGATGCTAGACCAGTGCAAGGTGGCAATGGAGTTTCAAATGATGATTTAGA AGAAGACAAGAGAGAATAA
CDS sequence (LotjaGi3g1v0412100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATGTCTCTTGTTTGATAGAGTCACATTCCGTAGAACGAAGGAATTCTCAAACTTTAGCTCGTGGCCTATTCAAGC TGTTGTTTTTGAGGTTGAAGATAGAGAGACAATTGGTGGTTCAGCGTATGGGGGTCAAAGGGCTGTCTGTTGCACCGGTG ATCTAGCAAAACTCGGTGTGTGTGCTGAGGGGCAGGTAATTTACCGCCCTTCTCAGGTGAATTCTGATTGGCCTAAAGTT TTTGGTGTCCCTTTTGAAACGGATGATGAAGTAGCAGTGCTGCCGACGAAATCAATACAAATCACGAAAACTGGGATGTA TAATTTGTATTTCATCCATTGTGACACAAGGCTTAAAGATTTGGCTGTAGAAGGGAAAACTGTATGGAAAAATCCCTCTG GCTATCTTCCTGGTAGAATGGCACCTATGAAAATTTTCTACCAGTTCATGTCTTTTGCATTTGTGTTGCTTGGGCTCTTT TGGTTCTATCAATATGTTAGATTTTGGAAGGAAGTATTTCCACTGCAGAACTGCATTACCCTAGTGATAACCCTTGGCAT GTTTGAGATGACTCTGTGGTACTTTGACTATGCTGAATTCAGTGAGACTGGAATCAGGCCAACTGGGATAACCATATGGG CTGTCACCTTTGGTACCGTTAAGCGAACCGTGGCACGTTTGATCATTTTAATAGTAGCAATGGGCTACGGTGTTGTGAGA CCTACCCTTGGCGGCCTTACATCAAAGGTTATTATGCTTGGAGGAACCTTCTTTGTCGCATCTGAAGTTCTTGAGTTGGT GGAACATGTCGGTGCCATAAGTGATCTTTCTGGAAAGGCAAAGCTTTTTTTGGTTCTTCCCTCTGCTGTATTGGATGTGT TCTTCATTCTTTGGATTTTCACCTCACTCTCTGCAACTTTAACTAAGCTTCAGGCAAGAAGGATGATGATAAAATTGGAC ATGTATAGGAAGTTCACTAATGCTTTGGCAGTTGCTGTGATCGTATCTGTCGGCTGGATATGTTATGAGCTTCATTTCAA ATCAAATGATGTATACAATGAGAGATGGCAGAATGCATGGATCATCCCAGCCTTTTGGCAAGTTCTGTCTTACTCTCTCC TGTGTGTTATCTGTGCTCTTTGGGCACCATCTCAAAATTCAACAAGATATGCGTACCGTGGTGATGATGGAAGCGATGAA TTTGATAGGGATGAAACTACTTTGACGCTCATTAAACCGGCATCTATTTCTGCAAAGGATGTTCGAATTGTGCCAGATGC TAGACCAGTGCAAGGTGGCAATGGAGTTTCAAATGATGATTTAGAAGAAGACAAGAGAGAATAA
Protein sequence (LotjaGi3g1v0412100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCLLFDRVTFRRTKEFSNFSSWPIQAVVFEVEDRETIGGSAYGGQRAVCCTGDLAKLGVCAEGQVIYRPSQVNSDWPKV FGVPFETDDEVAVLPTKSIQITKTGMYNLYFIHCDTRLKDLAVEGKTVWKNPSGYLPGRMAPMKIFYQFMSFAFVLLGLF WFYQYVRFWKEVFPLQNCITLVITLGMFEMTLWYFDYAEFSETGIRPTGITIWAVTFGTVKRTVARLIILIVAMGYGVVR PTLGGLTSKVIMLGGTFFVASEVLELVEHVGAISDLSGKAKLFLVLPSAVLDVFFILWIFTSLSATLTKLQARRMMIKLD MYRKFTNALAVAVIVSVGWICYELHFKSNDVYNERWQNAWIIPAFWQVLSYSLLCVICALWAPSQNSTRYAYRGDDGSDE FDRDETTLTLIKPASISAKDVRIVPDARPVQGGNGVSNDDLEEDKRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 144 | 144 | - | – | |
| PANTHER | 4 | 447 | 444 | 6.3E-255 | ||
| PANTHER | 4 | 447 | 444 | 6.3E-255 | – | |
| Pfam | 101 | 387 | 287 | 7.6E-102 | ||
| TMHMM | 145 | 166 | 22 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| Phobius | 164 | 174 | 11 | - | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 175 | 195 | 21 | - | – | |
| Phobius | 196 | 222 | 27 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 223 | 239 | 17 | - | – | |
| Phobius | 240 | 245 | 6 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 246 | 264 | 19 | - | – | |
| Phobius | 265 | 283 | 19 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 284 | 307 | 24 | - | – | |
| Phobius | 308 | 327 | 20 | - | – | |
| TMHMM | 325 | 346 | 22 | - | – | |
| Phobius | 328 | 346 | 19 | - | – | |
| Phobius | 347 | 357 | 11 | - | – | |
| Phobius | 358 | 382 | 25 | - | – | |
| TMHMM | 361 | 383 | 23 | - | – | |
| Phobius | 383 | 447 | 65 | - | – | |
| MobiDBLite | 425 | 447 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0412100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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