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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0426100 |
| Transcript ID | LotjaGi3g1v0426100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT1G55180.2 phospholipase D alpha 4; Swiss-Prot: sp|Q9C888|PLDA4_ARATH Phospholipase D alpha 4; TrEMBL-Plants: tr|K7L7N0|K7L7N0_SOYBN Phospholipase D; Found in the gene: LotjaGi3g1v0426100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83569541..83572678) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAGATTCTTTAGTGTCTGCATAAACTCATAACCATGCATGAATTTCTCTTATTTTCAGTGCATATTCAAAAGTGGAA AGCCTGCTTATGTGACCATCAAGGTAGACAACAAGAAGGTTGCAAAAACGAGTCAAGAAAGTGATCGTGTATGGAACCAA ACCTTTCAGATTCAATGTGCTCATCCACCTGAGTCAACTATCACCATTGCACTGAAAACATCATGTTCCACATTGGGCAA ATTCCACATCCAGGCCCAACAGCTGTTGAAGGAAGGAAGTTTAATCAATGGGCTCTTCCCTCTCCTCATGGAAAATGGAG AACCAAACCCAAAACTCAAGTTGAAGTTTGTATTGTGGTTCAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAAGTACTC AGCTATGGGGAGTTTCAAGGGCTGAGGGATGCTGCATTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGC TCACCATTCTCCAGCTTTCCAACCTCCCTCTGATCTATGTGGGACTCCACAAAAGCTTTGGGAGGATGTCTATAAAGCCA TTGAAGGTGCAGAATTTATAGTTTACATTGCAGGCTGGTCCTTGAATCCCAAGATGGTTCTGGTAAATATAGTGCATTTC TAGAAAACCTTCTACAGTTGTTTTTGAAGTTATAATAAATTAATGGAGAGAAACTTTTGTGAGTAGCTTCTGAGTTTCAG AACTTGATGAAAAAGAAATCGATCCAAACATGCTAATAATGTCATGTCATACCTTCCAATTACATTGATATTCATTCTTC TACAAGTTATGCTCTTTGGCAGGTTAGAGATCCTCATACAGAGATTCCACATGCCAGAGGAGTAAAGCTGGGTGAGCTAT TGAAGAAGAAGGCAGAGGAAGGTGTGGCTGTGAGAGTCATGCTTTGGGATGATGAAACATCTTTGCCTTTTATCAAGAAC AAAGGTGTGATGAACACCCATGATGAGGATGCCTTTGCTTACTTCAACCACACAAAGGTAATATGCAGAAAATGTCCAAG ATTGCACCACAAGTTCCCCACATTGTTTGCTCACCATCAGAAGATAATAACAGTGGACACCAAAGCACCCAAATCCATTG GTGACAGAGAACTCACAAGCTTTCTGGGTGGGTTAGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCACTGTTT CACACACTCATTAAGGAATCCCATTGCTATGACTTCTACCAAACAGACATTGGAGGAGCAAGCCTCAACAAAGGAGGGCC AAGAGTGCCTTGGCATGATGCTCATGCCAGTGTTACCGGTGAGGCGGCTTGGGATGTGTTAACCAATTTTGAGCAAAGAT GGACAAAGCAGTGTGATCCTTCTCTTCTAGTCCCTGCTAGCACATTGGTAAATCTCATGCCTCAAACAAGCTCAAGCACT CCCAAAGAAAGGGATTGGAAAGTTCAAGTGTACAGGTCAATTGACCATGTATCTGTTGGCAAGTTGCTTGGGCAGTTAAC TGTGGAGAGGAGCATCCATGAAGCTTATGTTGAGGCAATTAGGCATGCTGAGAGGTTTATATACATTGAGAACCAATATT TCATTGGGGGGTGCCATTTGTGGGAGAAAGATAGGGATTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTGAAG GTGGTTAGCAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTCATGCCTATGTGGCCAGAAGGAGTGCCTGAAAG TGAACCTGTTCAAGATATACTTCATTGGACAAGAGAAACAATGACAATGATGTATAGGTTGATTGGAGAAGCAATACAAG GGAGTGGGGAACCAGGACACCCATCAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAGCAGAAGGGGAAAGGGGAG TATCTTCCACCAGATTCTCCTCAACCTGGAACACAATACTGGAATGCTCAGAAAAATAGGAGATTCATGGTTTATGTTCA CTCCAAGTTCATGATAGGTATTCTTGCATTATTAGTCCTTCATTATTTTCTTTTCCACTTGTCTGTCTTTTCTTGTTCTT CAGTTAGATTATACAAGAATTCTGGTAGCAGTGTGACAACTGACAAGTGTTAATAATTAACTTTAAAGACATGTACTTAA TTTGGATAAACTTCCAAACAAGGACTCATGGAAAAATCAAAATCAAAATCATTTTGCAATCATGAGTCCTCCAAATAATA GCTTCTTAAAGTCATGTACTTGTTATAGTTTTTAACTATTTCAAATGTGCAGAAGTGCTTATTTGGAATGATTGTTGCCT AATAATATACTCCATTAACTCCTTTTATATATAGAAGGGTAAACATCAAAGTAACTGAGTATAATGTTTGGAAATCGTTC TACCTCAAGATAAATTCTGCAAAGTGCATATTTGGATACACGGTGAAAAATCACAGTGAGGCAAACTTACGATGGACAGA AGCAACTTCCCTTAGCTTTTGTGGACAGAACCAAATTCTAATGTGACTTTGGCTTCTCTGTTGTTTTCCATCATGTATCC AAACATGAACACAAGTAGCTTCTGGGTGCCATAACTACTCTTAGAAAAAATAAGCTAATCCAAAGATGCTAAAAGTGTAC AATTGTTGAATTGTGGTATAAGTTTTTTTGCTGCTCACAATTGTTTTCTTGCATGTGCCACCAGTGGACGACCTATACAT GCTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGATGGGGAAAGGGACACTGAGATAGCCATAGGATGCTACCAGT CTCAAGATGGAGCTGCTAACCAAATGAACCTAGGTGATATTCATGCATTCAGAATGTCACTATGGTATGAGCACACCAAT AGTGCTGAGGAATTGTTCTTGGAGCCAGAAACATTGGAATGTGTGCAGAGGATGAAATCAATAGGAGATCAAATGTGGGA AATCTACAGCAGTGAAGAGGTTGTGGACATGGAGGGTGTGCACCTTGTTACTTACCCTGTGAGGGTTACACAAGAAGGGC ATGTGAAGGACCTTGCCGATGGAGTTCACTTTCCTGACACAAATTGTCTAGTGAAGGGGAAGAGATCCAAAATGTTGCCC CATAACTTTACCACTTAG
CDS sequence (LotjaGi3g1v0426100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCTCTTATTTTCAGTGCATATTCAAAAGTGGAAAGCCTGCTTATGTGACCATCAAGGTAGACAACAAGAAGGT TGCAAAAACGAGTCAAGAAAGTGATCGTGTATGGAACCAAACCTTTCAGATTCAATGTGCTCATCCACCTGAGTCAACTA TCACCATTGCACTGAAAACATCATGTTCCACATTGGGCAAATTCCACATCCAGGCCCAACAGCTGTTGAAGGAAGGAAGT TTAATCAATGGGCTCTTCCCTCTCCTCATGGAAAATGGAGAACCAAACCCAAAACTCAAGTTGAAGTTTGTATTGTGGTT CAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAAGTACTCAGCTATGGGGAGTTTCAAGGGCTGAGGGATGCTGCATTCC CACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGCTCACCATTCTCCAGCTTTCCAACCTCCCTCTGATCTATGT GGGACTCCACAAAAGCTTTGGGAGGATGTCTATAAAGCCATTGAAGGTGCAGAATTTATAGTTTACATTGCAGGCTGGTC CTTGAATCCCAAGATGGTTCTGGTTAGAGATCCTCATACAGAGATTCCACATGCCAGAGGAGTAAAGCTGGGTGAGCTAT TGAAGAAGAAGGCAGAGGAAGGTGTGGCTGTGAGAGTCATGCTTTGGGATGATGAAACATCTTTGCCTTTTATCAAGAAC AAAGGTGTGATGAACACCCATGATGAGGATGCCTTTGCTTACTTCAACCACACAAAGGTAATATGCAGAAAATGTCCAAG ATTGCACCACAAGTTCCCCACATTGTTTGCTCACCATCAGAAGATAATAACAGTGGACACCAAAGCACCCAAATCCATTG GTGACAGAGAACTCACAAGCTTTCTGGGTGGGTTAGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCACTGTTT CACACACTCATTAAGGAATCCCATTGCTATGACTTCTACCAAACAGACATTGGAGGAGCAAGCCTCAACAAAGGAGGGCC AAGAGTGCCTTGGCATGATGCTCATGCCAGTGTTACCGGTGAGGCGGCTTGGGATGTGTTAACCAATTTTGAGCAAAGAT GGACAAAGCAGTGTGATCCTTCTCTTCTAGTCCCTGCTAGCACATTGGTAAATCTCATGCCTCAAACAAGCTCAAGCACT CCCAAAGAAAGGGATTGGAAAGTTCAAGTGTACAGGTCAATTGACCATGTATCTGTTGGCAAGTTGCTTGGGCAGTTAAC TGTGGAGAGGAGCATCCATGAAGCTTATGTTGAGGCAATTAGGCATGCTGAGAGGTTTATATACATTGAGAACCAATATT TCATTGGGGGGTGCCATTTGTGGGAGAAAGATAGGGATTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTGAAG GTGGTTAGCAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTCATGCCTATGTGGCCAGAAGGAGTGCCTGAAAG TGAACCTGTTCAAGATATACTTCATTGGACAAGAGAAACAATGACAATGATGTATAGGTTGATTGGAGAAGCAATACAAG GGAGTGGGGAACCAGGACACCCATCAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAGCAGAAGGGGAAAGGGGAG TATCTTCCACCAGATTCTCCTCAACCTGGAACACAATACTGGAATGCTCAGAAAAATAGGAGATTCATGGTTTATGTTCA CTCCAAGTTCATGATAGTGGACGACCTATACATGCTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGATGGGGAAA GGGACACTGAGATAGCCATAGGATGCTACCAGTCTCAAGATGGAGCTGCTAACCAAATGAACCTAGGTGATATTCATGCA TTCAGAATGTCACTATGGTATGAGCACACCAATAGTGCTGAGGAATTGTTCTTGGAGCCAGAAACATTGGAATGTGTGCA GAGGATGAAATCAATAGGAGATCAAATGTGGGAAATCTACAGCAGTGAAGAGGTTGTGGACATGGAGGGTGTGCACCTTG TTACTTACCCTGTGAGGGTTACACAAGAAGGGCATGTGAAGGACCTTGCCGATGGAGTTCACTTTCCTGACACAAATTGT CTAGTGAAGGGGAAGAGATCCAAAATGTTGCCCCATAACTTTACCACTTAG
Protein sequence (LotjaGi3g1v0426100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFSYFQCIFKSGKPAYVTIKVDNKKVAKTSQESDRVWNQTFQIQCAHPPESTITIALKTSCSTLGKFHIQAQQLLKEGS LINGLFPLLMENGEPNPKLKLKFVLWFKPAELEPSWAKVLSYGEFQGLRDAAFPQRSNCHVKLYHDAHHSPAFQPPSDLC GTPQKLWEDVYKAIEGAEFIVYIAGWSLNPKMVLVRDPHTEIPHARGVKLGELLKKKAEEGVAVRVMLWDDETSLPFIKN KGVMNTHDEDAFAYFNHTKVICRKCPRLHHKFPTLFAHHQKIITVDTKAPKSIGDRELTSFLGGLDLCDGRYDTEQHSLF HTLIKESHCYDFYQTDIGGASLNKGGPRVPWHDAHASVTGEAAWDVLTNFEQRWTKQCDPSLLVPASTLVNLMPQTSSST PKERDWKVQVYRSIDHVSVGKLLGQLTVERSIHEAYVEAIRHAERFIYIENQYFIGGCHLWEKDRDCGCTNLIPIEIALK VVSKIKAKERFAVYIVMPMWPEGVPESEPVQDILHWTRETMTMMYRLIGEAIQGSGEPGHPSDYLNFFCLANREQKGKGE YLPPDSPQPGTQYWNAQKNRRFMVYVHSKFMIVDDLYMLIGSANVNQRSMDGERDTEIAIGCYQSQDGAANQMNLGDIHA FRMSLWYEHTNSAEELFLEPETLECVQRMKSIGDQMWEIYSSEEVVDMEGVHLVTYPVRVTQEGHVKDLADGVHFPDTNC LVKGKRSKMLPHNFTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 736 | 731 | 0.0 | – | |
| PANTHER | 6 | 736 | 731 | 0.0 | ||
| PIRSF | 6 | 736 | 731 | 1.2E-269 | ||
| Gene3D | 11 | 147 | 137 | 3.3E-5 | ||
| SUPERFAMILY | 16 | 103 | 88 | 1.17E-6 | – | |
| Pfam | 16 | 88 | 73 | 8.4E-7 | ||
| SUPERFAMILY | 121 | 385 | 265 | 5.02E-26 | – | |
| SMART | 274 | 311 | 38 | 1.1 | ||
| ProSiteProfiles | 274 | 311 | 38 | 9.572 | ||
| Pfam | 275 | 311 | 37 | 2.8E-5 | ||
| SUPERFAMILY | 402 | 666 | 265 | 1.96E-27 | – | |
| Gene3D | 425 | 634 | 210 | 8.5E-13 | – | |
| CDD | 426 | 626 | 201 | 4.10698E-123 | – | |
| ProSiteProfiles | 582 | 609 | 28 | 14.312 | ||
| SMART | 582 | 609 | 28 | 2.5E-6 | ||
| Pfam | 585 | 609 | 25 | 7.5E-6 | ||
| Pfam | 654 | 725 | 72 | 2.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi3g1v0426100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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