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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0448700 |
Transcript ID | LotjaGi3g1v0448700.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G06270.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LNC0|PPR16_ARATH Pentatricopeptide repeat-containing protein At1g06270; TrEMBL-Plants: tr|A0A151SAQ7|A0A151SAQ7_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0448700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86193007..86198180) extracted from Lotus japonicus Gifu genome v1.2.
CCAACATTCGCTGAACTCACTCTGAGAAAAATGTCACACGAATAGAACCCTAATCCCAAATCGACTGTCGATCATTGTGA AATCGGTTCATGGATCATCATTGTTGCTCGCGAAATTGAAATCTGCCACTGAGCTGATGAATTTCTTTTGCTGGTTTTGA AGGTATTTTGTTCTTTTTTTGATTCATATGGCTTCAAATTTACTGAGAATTTTGGATGAGTTTCTGTTGAAGTGTTACGC TGTGTTGTTAATTCATGGTTGCATTAACTTTATAATTGTGGTTCTTATGTTCTTAGCTGTTACTTGAAGTTCATGCAATT GTGATTTTTAATGGTTGATAAATGATAAGGATTGTTTGTCATTGTGGCAACAGTTAGTGAGAAATTTTGCTTTGAGAGAA TGAAATTATCTATTTTCTAGTAGTTAAGAATCGTTTAAAATTTTGAAGTTATGGGGGGTTTGGAACTTTAGCTAAGAACA TTAACTAAGCTTATATAGTACATTATTAAGAAGTTTATCTTCAAGTGATAGATAGAAGAGACTAAATGTAAGATTGGAAA ATTTAGTAAAGTGACTTAGTAGGAACTTGCTGTGAAGAAGAGTGGTGAGTAAGGTTCACAGATAGAGGTTCTATGGGAGC ATTATCCTTCTTAGTTCGATCAAAATGACCTTCATAGGCAAGAAGGGCAAAACACTTGAACAAAAGAGAAATACAACAAA CGCAAACAGAGAGAATTTAGGTCAAAATTAAAAAATGGAACCCTAGATTTGTGGCCCTTCGGGAAGCAAGGTGAATCGCT GTTAGGAGCCAGGATCGAGCCTCTTACCGCCTTGTGTTGTTCCTGCTAGCGGTTTAAGAACACGATTGAAGATCCTTGGC AGCGATATCTTGTTCTCACGGCGACGACAGTGGAATGAACAGAACATCCTCAACTCAAGGTTAGATTGTTTTTCTCTTCA ATTTAGAGTATTCTGCTTTGCTGTGCAAGTGAACCTACAACACAACACCAAATACTAAAACACCCATCGAAACATCTCCG TCTGTTTACATGTTAGAACCCAGTTCATGCCGTTTTACTCACTACTTTGATCTTCCAACTTGTTATGAAGTGCAGAATGT CCATATACTTTTACCCCCAATTACGGCTTTGATGTTTACCAAAGAAGCAAGATTTGGTGAAATACTATTGTTAAGTAAAA ATCATGATAGGTTCATTGTTTTTTGCATTTGTTGTGTTGATCAACCCTATACGCAGAAAAAGGGGGAAGTTGTATTTTTG ATCAAAACAGGGTCAAGTCCGGTATAAGGGAAGTTATATAATTTGAAAGCCATGCACATAGTTAATGCCATTCATATTTC TTTTATCTTGATTACAGTATTAAAATGATTCCTATATGTTGAAAGAATTGATATTTGTGGTAATAGCTGTTCAGCCTGTT CTATATATTATATGCATGTACCTCAGCTTTTACCTAATAAGAATTCTGTATGTCATTACTGTAATGGCATGCCGCGCTTT TATGATTTTATCATTACACTGTCTTTTAAACCACTGACAATGTCTAGCTGGTAGTTTCTAGTGATAGTTGCATATTTTAT CAATGGTTGGCCATATAATTGCGTTTATGTCTTTCTGTCTGCTGTCATATAAATCCTCATACCATTTTGCCCCTATTTAT GTATTTCCATGGAATTTTTTCTCAGGTTTTTGTTTCCTTATGTAACAAGTGCTCCGGTACTAAATTAGTTGATCAAGCAT GGTGGTTGGAGCAATATTGCGCCATAGATTTCTTCTTCACTTCAGTCCTATTTCAAACCAATGTTCTTCAGTTCGTTTAG TGTCTTCTTTGCAAAAGGTTGAGCAGGCTGTTAGAGCTGAAGTAGAAGCCAAAAACTACATCAAAATTCCTGACCTTCTC ATGTCCTTGGAGTCCTGCCAAAACTCAAATCCTTTTTCTTTTCTTTCTTCTTTTCCTCAAACCTTACAAGTACAAATTGT TGATGAAATGTTGCAATCTTTTATACCTCTTAGACCTCGCTCTAAACCTCAGCTAGCCTATTCCTACATTCTTTCTTATA CCCTCCAAAGTTCACATCCCTTCCCTGTTGCACTTGCTGTCCTACAACGGACTCTACGTTCTGGTTGTCTTCCAGTTCCT CAGACACATGTTCTCCTCTCATCTGCTTGGTTAGACAGGCGACTTCTGCCTCTTTCTGTAGCTAATATTTTACTTGAGAT GCCGTCAATTGGATATCATCCTGACTGTGGGACTTGTAATTATCTACTATCATCCCTTTGTGCTGTTGATCAATTAGCGG AGGCTGTTAAAGTCCTGAAGGGCATGGGTGGAGCAGGATGTATTCCTGATTCAAATAGTTATGGCATTGTCATTGGTGCG ATGTGCAGAGTGAGGAAGACTTCTGAGGCACAGGATTTGATGAAACAAATGGTGGTGAAATATGGGTTGACCCCAGGACA GGGAACACTGGTGGGATTGTTTGCAGCATTACGGGCAAACAGGGACATAAGACAAGCTATCGAGATGATTGAATTCCTGG AGAAAGAGGGTTACTCTGTTGGATTTGAGAGTTATGAAGTGGTAATTGAAGGATGCTTGGAGAAACGTGAGTATGTTTTG GCTGGAAAGGTTGTGATAAGGATGACAGAAAGAGGTTTTATACCATATATCAGAGTCAGGCAGAAGATAATTGAAGGTTT AGCCAGTATCAATGAGTGGAAGATAGCTTGTGCTGTGAGACAAAGATTTGCAGCACTTAAATCTTAGCTGTAAACTTATT TGCAGTTGGCCAATTACAACTCTTAATCCTGAAAAGGTGACTACACTACATATTTTTTTGTACGATATTCAAAAGAATTT TGCGTAAGGTAGATGTTTGCAACAGGAATATGGAGTAGCTTCATGATTAGGGAAATCTTTGTTTTTGTTTTTGATTTTAA GGAACTGCTCACTACTGAGGGGGATCTGGAACCTACAAATTTTTCTTGGTATAGTTGGATGGAGAAGAAGATGAAAATGG AGTGACATTTGCTGTAAGTATTTTAACTGTGTACTCTTATATTTTTCTTGCTATTTTGTTTAAGCTGTGAATCCAATTTT TTTCCCCCTTGATGTCCTTAATTTGTGTTTCTGCATATTATTAAACTCATCCCAATAGTTGCAGTGCCATACTTTAACCT TTCTAAGTACATAAATTTTCATGAGCTGACATATTTCATTCTACAACACCGCAGGTCAATTAGCCTCCAAGTATTTGCTT AATGCTTGACAGGGTAGGTAGCATCCATGGCAATGCCACAAGTACCACCTTTATTCCTAGCACCCCGCTTCATCCTAACC TAACTAGATTCACCGCAGTCATTTCCCCATGAACTTTTCACAATCCTGTACTTTTTACCATTTTCTTCATACCAATTATT GTCATGCCATGATTGAGGTTCTTTCCGTAACTTCCCGAAAAAATACATTTTGAATAAAATTGGAATGTATAACCTCCAGC ATCAGTTGCAACAGAGACAGGTTGATGAACAACTGCAGATTTTAGCATTTTCTTATTACCAGCAGATACCTTTTCATAGC CACCTATGGTGACTGCATGGTCTCTAGCTTTGGCCTTGTTGAGTTACCATCTGTTCCTTGATAAGGATACGCTTCATCAG TGGCAAGCCGACCGTGCTTGCTGATGTAGGTGAAAGCTGTTTCCATCTCGCCACCTTCACAGCCTTGGTTCCCATTTCTA ATATCACAATCTATCAGCTGTTGTTCAGACAGAGAAACCAACTTCCCTGTTTTTATTTTGTTGGTGCCTTCAACAGCTGC CACTGCGGAGAATGCCCAACCTCCCGCATCAAGAGAGTAGACACAAATGTGAAAACGTTAAAACATGTTCTTTTGCTAAT CATCAGATCAGATGACTTTTCATACGCTCAATTGTAAGGAATTTACTTATGTATGAGATTCTAGAAGACATCTATCTCTA TTCTCTAATTCATGTGGTCAGATTCAAAACTTTTAACATTTTAGATAAACCTTGTCCCTTTATTTAATCAACCAACCATC CATGTTTGGTGTGTATGTATAGGAGATTAGGAGCCTAGTAGGCAGTAGCTGCTGAACTGTATTATCTGGTACATTGAATG AATTCAATTTGGCTTCTCTCAACCATGCATATACTATTTATTGTAACTTGCAAGAAGCTTTACCACAATGGCTTTGATCC TTGACATGTGTATCTGCACCCATTCTTCCTCCAATCTATGCTTTTTGGTAGATCCCCATTGTCCTGATACATGAATCCTG TCTGTAAATGCAACTGCGGTCGAAAACCCAGATAGGTACTTCTGAACTCTTCATTTGTAAGATCTGCAAACTTATTGGCC TTGAGCTTATAAGAATAGTTTTGAGAGTTGCAGAACTCTATGAGCTTGACATTTGCTTGGTAAATGCCAAGACGGGTATT TTGTCCCTATATTTTCGTCCATGTCGTTTCAGCCAACTTTCATACCTCTTCCTCATGACTTTTGGATCAGTTGAATTGTT CTTACTTCTTAGTGCAGATGGAGAATGACAGTGTGCATTGGTATTTATTATAAGCATCATACTTTCATTCTCTATGTCAT GTTTTCTTTATTTACACATTGAATGCATGCACATTACTGTTCAGAGGTGTTTCCGTTGCAACTTTATCTACTTGTCTCCG TATTTTCCTTGCATGTGAGTTTAACAGGAAATAATTCTACTCATTTTCTGTTCATGACCATAGTACAGAGGTACATGTCT TCGAATTTGCTCAAGGTTTACCTGCCTGAGAACGATTGAATTCTGACACATTTAAATGTTTTTATAGGCATGTTCCTCAA TTTATGCTGTTTCAATTGCTGGGAATAGTTTGTTCTTGTTTAAGCGTAATTGTGATGCCTTTGTGTTGAATGAATTTGAA TTTAATGAAAGATGTTTATGATAGTCCTTTGTGATAGTTAATGCCTTATACTATTTGAATTAATTTAAAGATTATGGAAG AACCAGGGGTCATGTCCAGCTAAAGACATAGCTGGACATGAATGAGAAGGGAACCCTTATTAGAATCTAATTAATATCAT TGTGGAATCTTAAAATGAACATTGAAGAGCCATAAATATGCCTTATCCTCAAGT
CDS sequence (LotjaGi3g1v0448700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTGGAGCAATATTGCGCCATAGATTTCTTCTTCACTTCAGTCCTATTTCAAACCAATGTTCTTCAGTTCGTTT AGTGTCTTCTTTGCAAAAGGTTGAGCAGGCTGTTAGAGCTGAAGTAGAAGCCAAAAACTACATCAAAATTCCTGACCTTC TCATGTCCTTGGAGTCCTGCCAAAACTCAAATCCTTTTTCTTTTCTTTCTTCTTTTCCTCAAACCTTACAAGTACAAATT GTTGATGAAATGTTGCAATCTTTTATACCTCTTAGACCTCGCTCTAAACCTCAGCTAGCCTATTCCTACATTCTTTCTTA TACCCTCCAAAGTTCACATCCCTTCCCTGTTGCACTTGCTGTCCTACAACGGACTCTACGTTCTGGTTGTCTTCCAGTTC CTCAGACACATGTTCTCCTCTCATCTGCTTGGTTAGACAGGCGACTTCTGCCTCTTTCTGTAGCTAATATTTTACTTGAG ATGCCGTCAATTGGATATCATCCTGACTGTGGGACTTGTAATTATCTACTATCATCCCTTTGTGCTGTTGATCAATTAGC GGAGGCTGTTAAAGTCCTGAAGGGCATGGGTGGAGCAGGATGTATTCCTGATTCAAATAGTTATGGCATTGTCATTGGTG CGATGTGCAGAGTGAGGAAGACTTCTGAGGCACAGGATTTGATGAAACAAATGGTGGTGAAATATGGGTTGACCCCAGGA CAGGGAACACTGGTGGGATTGTTTGCAGCATTACGGGCAAACAGGGACATAAGACAAGCTATCGAGATGATTGAATTCCT GGAGAAAGAGGGTTACTCTGTTGGATTTGAGAGTTATGAAGTGGTAATTGAAGGATGCTTGGAGAAACGTGAGTATGTTT TGGCTGGAAAGGTTGTGATAAGGATGACAGAAAGAGGTTTTATACCATATATCAGAGTCAGGCAGAAGATAATTGAAGGT TTAGCCAGTATCAATGAGTGGAAGATAGCTTGTGCTGTGAGACAAAGATTTGCAGCACTTAAATCTTAG
Protein sequence (LotjaGi3g1v0448700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVGAILRHRFLLHFSPISNQCSSVRLVSSLQKVEQAVRAEVEAKNYIKIPDLLMSLESCQNSNPFSFLSSFPQTLQVQI VDEMLQSFIPLRPRSKPQLAYSYILSYTLQSSHPFPVALAVLQRTLRSGCLPVPQTHVLLSSAWLDRRLLPLSVANILLE MPSIGYHPDCGTCNYLLSSLCAVDQLAEAVKVLKGMGGAGCIPDSNSYGIVIGAMCRVRKTSEAQDLMKQMVVKYGLTPG QGTLVGLFAALRANRDIRQAIEMIEFLEKEGYSVGFESYEVVIEGCLEKREYVLAGKVVIRMTERGFIPYIRVRQKIIEG LASINEWKIACAVRQRFAALKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 340 | 332 | 2.1E-124 | – | |
PANTHER | 9 | 340 | 332 | 2.1E-124 | – | |
ProSiteProfiles | 97 | 132 | 36 | 5.536 | ||
Gene3D | 112 | 282 | 171 | 1.0E-22 | ||
Pfam | 168 | 217 | 50 | 1.7E-8 | ||
ProSiteProfiles | 169 | 203 | 35 | 9.416 | ||
TIGRFAM | 172 | 205 | 34 | 6.8E-5 | ||
ProSiteProfiles | 204 | 239 | 36 | 9.087 | ||
TIGRFAM | 207 | 239 | 33 | 0.0028 | ||
ProSiteProfiles | 240 | 274 | 35 | 5.393 | ||
Coils | 250 | 270 | 21 | - | – | |
ProSiteProfiles | 275 | 309 | 35 | 7.805 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0448700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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