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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002885
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1572 results. Now displaying 1 of 32 with 50 rows per page. This search has taken 6.497s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000719.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 312103 314781 +
6 domain predictions
 –
Lj0g3v0002149.1
n.a. n.a. chr0 681944 688099 -
5 domain predictions
 –
Lj0g3v0005979.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356519887|ref|XP_003528600.1| chr0 2253785 2256561 +
5 domain predictions
 –
Lj0g3v0010869.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 4279241 4281725 +
5 domain predictions
 –
Lj0g3v0015519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357487221|ref|XP_003613898.1| chr0 6048263 6049099 +
4 domain predictions
 –
Lj0g3v0019219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
5 domain predictions
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Lj0g3v0019219.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
5 domain predictions
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Lj0g3v0020909.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] gi|356523586|ref|XP_003530418.1| chr0 8414081 8416209 -
5 domain predictions
 –
Lj0g3v0022159.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] gi|356577724|ref|XP_003556973.1| chr0 8957448 8959485 -
5 domain predictions
 –
Lj0g3v0023469.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g14470-like [Glycine max] gi|356498922|ref|XP_003518295.1| chr0 9368133 9373652 +
6 domain predictions
 –
Lj0g3v0035769.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Fragaria vesca subsp]. vesca] gi|470112997|ref|XP_004292714.1| chr0 11380387 11383513 +
5 domain predictions
 –
Lj0g3v0038229.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358347566|ref|XP_003637827.1| chr0 12351274 12354478 +
5 domain predictions
 –
Lj0g3v0040399.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357506483|ref|XP_003623530.1| chr0 13148751 13149608 -
5 domain predictions
 –
Lj0g3v0046129.1
n.a. anthranilate synthase subunit I [Citreicella sp]. SE45] gi|496160028|ref|WP_008884535.1| chr0 15209744 15212704 +
3 domain predictions
 –
Lj0g3v0047089.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 15709276 15711861 -
5 domain predictions
 –
Lj0g3v0048349.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357498969|ref|XP_003619773.1| chr0 16279906 16280250 +
5 domain predictions
 –
Lj0g3v0048379.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 16286813 16288438 +
5 domain predictions
 –
Lj0g3v0048509.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 16331390 16340624 +
6 domain predictions
 –
Lj0g3v0048609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| chr0 16406487 16410053 +
5 domain predictions
 –
Lj0g3v0054629.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357465899|ref|XP_003603234.1| chr0 17547483 17548244 +
5 domain predictions
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Lj0g3v0056049.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like isoform X1 [Cicer arietinum] gi|502165572|ref|XP_004513623.1| chr0 18190422 18194425 +
5 domain predictions
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Lj0g3v0058699.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| chr0 19316312 19319713 +
6 domain predictions
 –
Lj0g3v0058749.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| chr0 19355578 19356296 +
3 domain predictions
 –
Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
5 domain predictions
 –
Lj0g3v0059939.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19914329 19916280 +
5 domain predictions
 –
Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
5 domain predictions
 –
Lj0g3v0067129.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] gi|356508382|ref|XP_003522936.1| chr0 23760356 23763066 +
5 domain predictions
 –
Lj0g3v0070249.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cicer arietinum] gi|502078188|ref|XP_004485865.1| chr0 25582162 25585824 +
5 domain predictions
 –
Lj0g3v0071389.1
n.a. pentatricopeptide (PPR) repeat-containing protein [Cucumis melo subsp]. melo] gi|307136045|gb|ADN33897.1| chr0 26168404 26169740 +
5 domain predictions
 –
Lj0g3v0072269.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial-like [Glycine max] gi|356570223|ref|XP_003553289.1| chr0 26755483 26759544 +
4 domain predictions
 –
Lj0g3v0072269.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial-like [Cicer arietinum] gi|502091429|ref|XP_004489548.1| chr0 26755660 26759892 +
4 domain predictions
 –
Lj0g3v0075399.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 28602106 28602550 +
4 domain predictions
 –
Lj0g3v0075409.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 28602551 28606626 +
5 domain predictions
 –
Lj0g3v0075419.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 28602827 28607323 +
5 domain predictions
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Lj0g3v0076279.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Cicer arietinum] gi|502162909|ref|XP_004512658.1| chr0 29047759 29048507 -
6 domain predictions
 –
Lj0g3v0076569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29218756 29228567 -
5 domain predictions
 –
Lj0g3v0076569.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29225527 29228567 -
5 domain predictions
 –
Lj0g3v0077609.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like [Cicer arietinum] gi|502078677|ref|XP_004486021.1| chr0 29785743 29786533 -
4 domain predictions
 –
Lj0g3v0078539.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] gi|502153966|ref|XP_004509525.1| chr0 30232657 30234882 +
6 domain predictions
 –
Lj0g3v0078579.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| chr0 30265408 30267641 -
5 domain predictions
 –
Lj0g3v0079559.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 30771688 30776777 +
6 domain predictions
 –
Lj0g3v0079829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Glycine max] gi|356529499|ref|XP_003533328.1| chr0 30832142 30832830 +
5 domain predictions
 –
Lj0g3v0079949.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357503117|ref|XP_003621847.1| chr0 30927666 30928505 +
6 domain predictions
 –
Lj0g3v0082099.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] gi|356516061|ref|XP_003526715.1| chr0 32190736 32192974 +
5 domain predictions
 –
Lj0g3v0082219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Cicer arietinum] gi|502177168|ref|XP_004516023.1| chr0 32248740 32250072 -
5 domain predictions
 –
Lj0g3v0082629.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 32464818 32466032 -
5 domain predictions
 –
Lj0g3v0084289.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like isoform X1 [Cicer arietinum] gi|502123904|ref|XP_004498305.1| chr0 33476200 33479757 +
3 domain predictions
 –
Lj0g3v0084299.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357438675|ref|XP_003589614.1| chr0 33477040 33479906 +
4 domain predictions
 –
Lj0g3v0084789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Cicer arietinum] gi|502165633|ref|XP_004513641.1| chr0 33825648 33828377 +
5 domain predictions
 –
Lj0g3v0086789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g40240, mitochondrial-like [Glycine max] gi|356529368|ref|XP_003533266.1| chr0 35077836 35080366 +
4 domain predictions
 –