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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0451000 |
| Transcript ID | LotjaGi3g1v0451000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Frigida-LIKE protein; TAIR: AT5G27230.1 Frigida-like protein; Swiss-Prot: sp|Q5XV31|FRL5_ARATH FRIGIDA-like protein 5; TrEMBL-Plants: tr|A0A072VCH7|A0A072VCH7_MEDTR Frigida-LIKE protein; Found in the gene: LotjaGi3g1v0451000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86442890..86448616) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGTGTGAATGCTGTACTCAACACTTCACTCTCATGACCCTGACCAAAAGCATTGCCAAAGTTGCAATCTTTTTCAT GCTGAACCCTACTTCCAGTTGTTTCGTTTGATCCTTCTTCCTCGCTCCTTTTCTCTGAACAAATCCTATAAAGCTTTCAC CTTTTCATCTTCTTCTTCCACTTTTCGCTTCTGGGGTGTCTCCAAATTCATTTGCTAGTACTGGAAGAGTAGCATTTACT CTGTGAGTAACGCTTTCTTATTCCCTCATTCTTCTTTCACATGCATTGTGATTGTTACACATTTTGAGCAGTCAACAGTA TTTTTCTTTTGTAAAATTGGTGTGTTTTTTTACAACAATAATTACAATGTTGATCATGATGATGACGGTTATGATGAATT TACTAGCTCTGTAGTGCTTGATGCTGTTTTCCCATGTTTTGTTGTGAGAATCCAAGTTGAAATGTCTATTTTCTTGTTGT TCAAGTTTGTTTTGGTAGTTTATTGTAATACTTGATTTTTCATCTAGTAGTTTCTTTTGTGCGTTTGTAATTCTGTAATG TGAAGCAAACTGTCAAAATTGTGCATATCTAATCCATGTTAAACTCAACGTGTCAAATTCTAGCTTATTTGTTGTTTGTG CGGTGAAGTCATGTTGGCGTTGGCTCCGAGGCCTAAACAATCACGCGCTAAAATGAAATGTATTTTTCTTCCCAGGGTTT TTATGTGGTGTACACGCCATTGGCTAAACATTCAATAGTTGAATAATGGCTGGTGAGGCTTCTGGTGACCTAAATTTGTC ATGTGGTTCTGATTTTGGAGATGATGGGGGAGAGACTTTGAAGCAAGATTCAGAAGTGAGGAAGTTTGCTTCTTATGAAG GATCTGGTGGTGGTGGTGATGATGATATCCTTTTTTCAGCAAGTTCATTCCAGGTTCCTACTGTGCTGCCTGTTAAGAAG AGAACACTAGATATTGATAACAACAATTCCTCGCACAGTTCAGCTAAGAAATCAAAGGTGTCATTACATGATGATGAAGA AGATGATGATGATGATATGCCTATTTCATGGATAGTGAAAAGGTCGTCCGTTTCAGCTGATAAATCACTTTCCATGATGA AGAAGTTCATAGTGAAAGAACTTGATTTGCTAGAAAAAGCATTTGAGGAATGCCGAAGGAAGCGACAAGCAGAGGAACTG AGATTGCACTCCCTGGAGAGACAAGTTGAGGAGTGCACCATAGAGCTTGATAATAAGAAAATCCAAGTTGGCTGTATTCG AAGAATTAATGAAATTTACAAAAAACTGCAGATGAAAATTGAAGAATGTGTCTGCGATTTTGTGACCAAGGAAACATCGC ACAGTTTGATGGAGGACTTGGTTAAAGAGTGCGAGCTAGAGCTCAAGACAAAACAGGTTGAACTTGAGGTTCTTTTTCAA AAAATTGCTCAATGTACTAAGGATATGGAGACCAAAGAGGGAGAGTTTGATGCAATAAACAAGTTATTTGATGAACAAGA AAAAGAGCTAGAGTCAGAAAGGAAGAAGTTACTTCAGGTAATCTCGACAAGGACTTATCATTGTGCTGTGAAGGACATTG AGTCTATGAAGAAGCAACAAGAAGGCAGGAGTAAGGAGCTTGAGTCAATACAGAAGCGACTTGAAGATCGAGTGAAGGAG TTTGACTTAAAAGAAGAGGAATTTGTATGCCGAGTGAAGGAGATTGAATCAAATCTTGGGAGCCAAGAAAAGGACATTGA TTCAAAAAAGAAGCAACTTGAAGGCCAATTAAAGGAGCTCGTTTCAAAAGAGAAACAACTTGAAGGTCGAGCGGATGAAC TTGAGTTAAAAGAGAATCGACTTAAAGGCCAACTAAAGGAGTTCAAATCAAAAGAGGAGGAATTTGAAGGTCGAGTGCAG GAGCTTGAGTTAAAAGAGAATCAACTTAAAGGCCAAATTAAGGAGTTCGAATCAAAAGAGGAGCAACTTTCAGAACAAGT GAAAGATCTGGAATCAAAAAATAAGCATTCTGAAAGCCTAATGGAGGAGATCAAAACAAGAGAGAAGGAACTTGAAGACC GAGTGGAGGAGCTCGAGTTAAAAGAGAAGCAACTTAAAAGCCAAGTTAACGAGTTTGAATCAAAAAAGGAGGAATTTGTC GAACAAGTGAAGGATCTTGAATCAAAAAAGAAGCATTATGAAAGCCTAGTGGAGGAGGAACTCAAATCAAAAGAGAAGAA ACTTGAAGGCCGATTGAAGGAGATTGAATCAAAAGAGAAGCAACTTGAAGATCAAGTGAAGGAATTTGAATTAAAAATGG AGGAATTCGAAAGCCAAGTAAAGGAGCTCAAATCAGACGAGAGAAGAGAGAAGCAAAATGAAGTATCAGTAAAATCAATT AAAGAGGAAAGTGAATTGGGTAAATATTCTTCTTTATCCAGTTTATTGAAGCATCTTCATTTCATCTGTTTCTTTGAATG ATATTGATACTTCTAGTCAACTGATCTGCCTAATTTGTTAAAAATATCATTTGTTAGTCAAGTTGAAAAACTTCTCTAGT TTTCGTGTGCACTGCGCGAGCATGGACACATGCATTGTCAAACTTATGAGGAAATGTTTTCCTCCCATTTTAAACATTTT CAGAAGCTCTTAAATTGAAAACCTCTGATATTGTATCTTTAGCTAAGTGTCGTAAATAATGTACATTACTGCAACATATA GATTAGTAGAGTAATGTAGTTTTTACTTTTTATTGCTTCAGTTCTAGTGATATGATGATATTTATTTTAACTGAGTATAG AATGGTTTTTCCCCAGTCCCTATTTCAATCTGTGAGAGATTTTTCATTCTTTCATGTTATTTCTATTTTTTTAAATTCTA TTATCTACTTGATATACTGATGCTTCTATAAGTATGAAAGAGCTTAAATATCTACTAGCTTAATATGCAGTTACATCTTA CACAGATAATCAATTGAGTCCCACCATTGATGGAAGGAGTTTGCAGATGCTACCAAGTGAGCAAACAGATGAACAACCTG AATCGATTGAAAATAACATTCTAGCTCAGCTCAAAGCAACATCAGATCCATCAAAAGTCGTTTTGGATATTATACAGAAC CCGATTGTTCCACCATGTATGAAGGGAGACAATGCTGTAATTATTGAAAGCAGCCACATTTTGATTCTAGAACAACTGAT GCGTATCTCGCCACATGTTAAACCTCATGTAAGAGAAGAAGCAATGAGGCTAGCACTTGATCTGAAGAAAGCTTGTGATC TGAAAGCTAACATGAGAGAAAATTCTGTGAACTCTTTGGTGGTTCTGTGTTTTCTACAACTCCTTTCAATCTATGGATTA CTTTCTTCTTTTGATGAGGATGAAGTTTTAAAGCTTTTTGACTTTGCTGCTCATCACAAGCAAACTGTCGAGCTGTTTCA GACCCTGGGTTTCACAGACAAAGTCTCTGGTATGTTTACTGAATTATACTTATTTTCATCTCACTCAACTATAGGTTACA TCATATGTCTAATGTGTTAATATCAATAGAGCAGATTATTAGCTATCTCTGAAATAGGATTTTTTACTTGATTCATAATA TATTTACATTAAAGACAGAGCTAATCTAAGATGTGTCTCCAGCTTTGAAGCAATGCAACCAGACACATAGTTTGACTTTA AATAGTAAAGAAATTTTCTCTTTTATTTGGGTTTAGCTGACTTCATTCTGATCATTAACAAACATCAACTAGAGTTCATG CAAGGAGCTGAAACTCAAATTCTAGTCATGCATCAGTTTGCATATTAAACTAGGCACTTTCCTGATCAGATATCACTCTT TTACATTTGGTTATTTTATAACTATGTATGTATAGGTTCAATGAGTTTTTTAAAAATGTTGACCTGCATACCCAAGTCAT ATTTTCAGGTTCATTTTGGGATACAACTTGCTTTTCCTGCCTGTTAAGAATTATATTTCTTCTTATTTCAAAGCTGTTTG TAATTGTGTCATGTGTGTCGGTTTGATTTATATGGTGTGTTTCTTTTGGTACAACTTAAGGCAAATTGATGTTAGCATCT GACATGTAGTTTATCAGCTCAGTCTTAATATTAGTTTAAGGTTCATCATTGAGCCCATATTGAGATCAAAGTTTTAAAAT CCTTGGCTGATTTTGTTCCCATTTTCAGCTTGGATATGTTTAAGCAGTTATATTTAATATGATTTTCACCATTGCATGGT TAGTACTAGCTTGACATGTCAAAGTTTATTTGGTGAAAAATATGATGGGAACTCATCACCATCATTGAAAAAAGTAAAAA CTATAAATTCCTAACTACAAACTTGCTTTTGAGCATTTTTGTATGCATGCTGCAAGCAAGCCCATTCTTGGTGAGCTGCA GAGTAACCTAGAACTGAGTGACAGGAACATGGAGGCTTCAAGGATGTCAACTGGCAACTTAGCTTCAAGTGCAATGCAAC AGTACTGTGGTATGGCGTCGAGTCACCAAGCCTTCTAGGAACTCTTGGCTTGACTGCATTAACAGATGTCCTGTGTCTTT CACTTGAAGTGATAATTTGGAAGCACTATTGTTCATCGATTAGTAATGAGAAGCTTTAAGCCGTGTTTAGGATCAATAAT GGTAGTTCTAAGTTGGTCTTCAAATTTCAGGGATGCTTTTTTCTGTCTCAAAAAAAAAATAGCTGTATTAATTCTCTGAG CCCAAGATTTGCCTTTGAGAAAGAAAACTCTTTGACCTTCTCTTGTTCTCTTTCCTAACCCTTCAGTTAAAATTTGGCAC ATAGCTAAAAGAAAACTAACAATTGAGAAAACATCTATGGTCTGAGTTGTTGTTCTCTTTACTTCCAGTTCCCGGCTTGG AATTTTAAATTAAGCCCCTTTGCTTAGTTATGGTTAACTAGAACTAATTCTCTGGCTGTAATTGTCAGATTTTGTTCAGA GCCTTATTAAGAAGGAGCAGTATTTTGAAGCTGTTAGATTCATTTGTGCATTTAAGTTGGAAGACAAGAATCAACCTGTT GATCTCTTGCGGAAATACGCGCAGAATGCAAAACTGATTTCTGGGCGCATTTGCAAGAACACCATGTCTCTTGAAATCAA GGTTAATTTTTTCTGATTCAAATTCTAGTTTCTCAAGTATTCTATCTTCATAGTTACATGGTAGCTAACTATATATATGT TAATGTGAACTCAGGATGATGCCAGAGATCAAGAAATTGCTAGCCTGAAAAGTGTTCAACAATGCATTTCAGACAACAAT CTAGAATCTGAGGATCTAATTAATGAGATTCAACATCGCATTAATGAGCTAAGTTGGGAAAAAGGCATTGGTGTTTATAA CCTAAGGAAAAGAAAAGCTTCTAATGGACACTAGTTGGGGTATATTAAACCTCTCTGGTGAATTAACAGGATTCTCTACC TATGCAAATAGTCTGCAAAGAAAAAGTTAGAGACTGAAAAACTCATTATAAATTTACACGGTTATCTTATCTCTTTTATA CTATTTTTTTCTTTCTTTTGTATTTTCGTTTATTCTGATTTGCCAAAGGCTTAGCTTTGATATGTAGAAACTTTTTTAAT ATGCAAAGTAGTACTCATATTTGGAGTATGTGCCACATACCGTGTGTATTTAGATTCGAGTTGAGTTAACCTAAAAGCAC ACTCATCTCAATCTATTAGAATAATTTTGTTTACTTTTTCCCTCTTA
CDS sequence (LotjaGi3g1v0451000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTGAGGCTTCTGGTGACCTAAATTTGTCATGTGGTTCTGATTTTGGAGATGATGGGGGAGAGACTTTGAAGCA AGATTCAGAAGTGAGGAAGTTTGCTTCTTATGAAGGATCTGGTGGTGGTGGTGATGATGATATCCTTTTTTCAGCAAGTT CATTCCAGGTTCCTACTGTGCTGCCTGTTAAGAAGAGAACACTAGATATTGATAACAACAATTCCTCGCACAGTTCAGCT AAGAAATCAAAGGTGTCATTACATGATGATGAAGAAGATGATGATGATGATATGCCTATTTCATGGATAGTGAAAAGGTC GTCCGTTTCAGCTGATAAATCACTTTCCATGATGAAGAAGTTCATAGTGAAAGAACTTGATTTGCTAGAAAAAGCATTTG AGGAATGCCGAAGGAAGCGACAAGCAGAGGAACTGAGATTGCACTCCCTGGAGAGACAAGTTGAGGAGTGCACCATAGAG CTTGATAATAAGAAAATCCAAGTTGGCTGTATTCGAAGAATTAATGAAATTTACAAAAAACTGCAGATGAAAATTGAAGA ATGTGTCTGCGATTTTGTGACCAAGGAAACATCGCACAGTTTGATGGAGGACTTGGTTAAAGAGTGCGAGCTAGAGCTCA AGACAAAACAGGTTGAACTTGAGGTTCTTTTTCAAAAAATTGCTCAATGTACTAAGGATATGGAGACCAAAGAGGGAGAG TTTGATGCAATAAACAAGTTATTTGATGAACAAGAAAAAGAGCTAGAGTCAGAAAGGAAGAAGTTACTTCAGGTAATCTC GACAAGGACTTATCATTGTGCTGTGAAGGACATTGAGTCTATGAAGAAGCAACAAGAAGGCAGGAGTAAGGAGCTTGAGT CAATACAGAAGCGACTTGAAGATCGAGTGAAGGAGTTTGACTTAAAAGAAGAGGAATTTGTATGCCGAGTGAAGGAGATT GAATCAAATCTTGGGAGCCAAGAAAAGGACATTGATTCAAAAAAGAAGCAACTTGAAGGCCAATTAAAGGAGCTCGTTTC AAAAGAGAAACAACTTGAAGGTCGAGCGGATGAACTTGAGTTAAAAGAGAATCGACTTAAAGGCCAACTAAAGGAGTTCA AATCAAAAGAGGAGGAATTTGAAGGTCGAGTGCAGGAGCTTGAGTTAAAAGAGAATCAACTTAAAGGCCAAATTAAGGAG TTCGAATCAAAAGAGGAGCAACTTTCAGAACAAGTGAAAGATCTGGAATCAAAAAATAAGCATTCTGAAAGCCTAATGGA GGAGATCAAAACAAGAGAGAAGGAACTTGAAGACCGAGTGGAGGAGCTCGAGTTAAAAGAGAAGCAACTTAAAAGCCAAG TTAACGAGTTTGAATCAAAAAAGGAGGAATTTGTCGAACAAGTGAAGGATCTTGAATCAAAAAAGAAGCATTATGAAAGC CTAGTGGAGGAGGAACTCAAATCAAAAGAGAAGAAACTTGAAGGCCGATTGAAGGAGATTGAATCAAAAGAGAAGCAACT TGAAGATCAAGTGAAGGAATTTGAATTAAAAATGGAGGAATTCGAAAGCCAAGTAAAGGAGCTCAAATCAGACGAGAGAA GAGAGAAGCAAAATGAAGTATCAGTAAAATCAATTAAAGAGGAAAGTGAATTGGATAATCAATTGAGTCCCACCATTGAT GGAAGGAGTTTGCAGATGCTACCAAGTGAGCAAACAGATGAACAACCTGAATCGATTGAAAATAACATTCTAGCTCAGCT CAAAGCAACATCAGATCCATCAAAAGTCGTTTTGGATATTATACAGAACCCGATTGTTCCACCATGTATGAAGGGAGACA ATGCTGTAATTATTGAAAGCAGCCACATTTTGATTCTAGAACAACTGATGCGTATCTCGCCACATGTTAAACCTCATGTA AGAGAAGAAGCAATGAGGCTAGCACTTGATCTGAAGAAAGCTTGTGATCTGAAAGCTAACATGAGAGAAAATTCTGTGAA CTCTTTGGTGGTTCTGTGTTTTCTACAACTCCTTTCAATCTATGGATTACTTTCTTCTTTTGATGAGGATGAAGTTTTAA AGCTTTTTGACTTTGCTGCTCATCACAAGCAAACTGTCGAGCTGTTTCAGACCCTGGGTTTCACAGACAAAGTCTCTGAT TTTGTTCAGAGCCTTATTAAGAAGGAGCAGTATTTTGAAGCTGTTAGATTCATTTGTGCATTTAAGTTGGAAGACAAGAA TCAACCTGTTGATCTCTTGCGGAAATACGCGCAGAATGCAAAACTGATTTCTGGGCGCATTTGCAAGAACACCATGTCTC TTGAAATCAAGGATGATGCCAGAGATCAAGAAATTGCTAGCCTGAAAAGTGTTCAACAATGCATTTCAGACAACAATCTA GAATCTGAGGATCTAATTAATGAGATTCAACATCGCATTAATGAGCTAAGTTGGGAAAAAGGCATTGGTGTTTATAACCT AAGGAAAAGAAAAGCTTCTAATGGACACTAG
Protein sequence (LotjaGi3g1v0451000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGEASGDLNLSCGSDFGDDGGETLKQDSEVRKFASYEGSGGGGDDDILFSASSFQVPTVLPVKKRTLDIDNNNSSHSSA KKSKVSLHDDEEDDDDDMPISWIVKRSSVSADKSLSMMKKFIVKELDLLEKAFEECRRKRQAEELRLHSLERQVEECTIE LDNKKIQVGCIRRINEIYKKLQMKIEECVCDFVTKETSHSLMEDLVKECELELKTKQVELEVLFQKIAQCTKDMETKEGE FDAINKLFDEQEKELESERKKLLQVISTRTYHCAVKDIESMKKQQEGRSKELESIQKRLEDRVKEFDLKEEEFVCRVKEI ESNLGSQEKDIDSKKKQLEGQLKELVSKEKQLEGRADELELKENRLKGQLKEFKSKEEEFEGRVQELELKENQLKGQIKE FESKEEQLSEQVKDLESKNKHSESLMEEIKTREKELEDRVEELELKEKQLKSQVNEFESKKEEFVEQVKDLESKKKHYES LVEEELKSKEKKLEGRLKEIESKEKQLEDQVKEFELKMEEFESQVKELKSDERREKQNEVSVKSIKEESELDNQLSPTID GRSLQMLPSEQTDEQPESIENNILAQLKATSDPSKVVLDIIQNPIVPPCMKGDNAVIIESSHILILEQLMRISPHVKPHV REEAMRLALDLKKACDLKANMRENSVNSLVVLCFLQLLSIYGLLSSFDEDEVLKLFDFAAHHKQTVELFQTLGFTDKVSD FVQSLIKKEQYFEAVRFICAFKLEDKNQPVDLLRKYAQNAKLISGRICKNTMSLEIKDDARDQEIASLKSVQQCISDNNL ESEDLINEIQHRINELSWEKGIGVYNLRKRKASNGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 664 | 664 | - | – | |
| PANTHER | 67 | 399 | 333 | 1.0E-185 | – | |
| PANTHER | 67 | 399 | 333 | 1.0E-185 | – | |
| MobiDBLite | 68 | 98 | 31 | - | – | |
| Coils | 126 | 167 | 42 | - | – | |
| Coils | 206 | 226 | 21 | - | – | |
| Coils | 241 | 261 | 21 | - | – | |
| Coils | 282 | 312 | 31 | - | – | |
| Coils | 317 | 538 | 222 | - | – | |
| SUPERFAMILY | 328 | 531 | 204 | 7.19E-8 | – | |
| PANTHER | 399 | 469 | 71 | 1.0E-185 | – | |
| PANTHER | 399 | 469 | 71 | 1.0E-185 | – | |
| MobiDBLite | 402 | 430 | 29 | - | – | |
| PANTHER | 455 | 821 | 367 | 1.0E-185 | – | |
| PANTHER | 455 | 821 | 367 | 1.0E-185 | – | |
| MobiDBLite | 526 | 576 | 51 | - | – | |
| MobiDBLite | 526 | 550 | 25 | - | – | |
| MobiDBLite | 551 | 576 | 26 | - | – | |
| Pfam | 554 | 820 | 267 | 1.1E-50 | ||
| Phobius | 665 | 684 | 20 | - | – | |
| Phobius | 685 | 836 | 152 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0451000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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