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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF57997
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 86 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.040s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0202189.1
n.a. n.a. chr0 100084839 100087954 +
1 domain prediction
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Lj0g3v0262219.1
n.a. phosphodiesterase 4D interacting protein [Xenopus ](Silurana) tropicalis] gi|118404700|ref|NP_001072886.1| chr0 135885049 135886035 +
1 domain prediction
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Lj0g3v0277449.1
n.a. PREDICTED: filament-like plant protein 7-like isoform X1 [Cicer arietinum] gi|502152852|ref|XP_004509125.1| chr0 143995694 144001156 +
1 domain prediction
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Lj0g3v0277459.1
n.a. PREDICTED: filament-like plant protein 7-like isoform X1 [Cicer arietinum] gi|502152852|ref|XP_004509125.1| chr0 143997418 144001866 +
1 domain prediction
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Lj0g3v0326859.1
n.a. PREDICTED: proton pump-interactor 1-like [Cicer arietinum] gi|502084555|ref|XP_004487714.1| chr0 170859123 170863907 -
1 domain prediction
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Lj0g3v0337779.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357518391|ref|XP_003629484.1| chr0 176915558 176916990 -
1 domain prediction
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Lj0g3v0353609.1
n.a. Methyltransferase FkbM family [Medicago truncatula] gi|357446127|ref|XP_003593341.1| chr0 186143576 186149235 -
1 domain prediction
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Lj0g3v0362239.1
n.a. PREDICTED: LOW QUALITY PROTEIN: filament-like plant protein 1-like [Cicer arietinum] gi|502123998|ref|XP_004498341.1| chr0 190982856 190987517 -
1 domain prediction
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Lj0g3v0362239.2
n.a. PREDICTED: LOW QUALITY PROTEIN: filament-like plant protein 1-like [Cicer arietinum] gi|502123998|ref|XP_004498341.1| chr0 190982856 190987672 -
1 domain prediction
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Lj1g3v1123910.1
n.a. PREDICTED: restin homolog [Cicer arietinum] gi|502163630|ref|XP_004512898.1| chr1 13990510 13993781 +
1 domain prediction
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Lj1g3v1123910.2
n.a. PREDICTED: restin homolog [Cicer arietinum] gi|502163630|ref|XP_004512898.1| chr1 13991269 13993781 +
1 domain prediction
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Lj1g3v2035120.1
n.a. PREDICTED: tropomyosin-2-like [Cicer arietinum] gi|502132039|ref|XP_004501205.1| chr1 23819265 23825237 +
1 domain prediction
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Lj1g3v2035120.2
n.a. PREDICTED: tropomyosin-2-like [Cicer arietinum] gi|502132039|ref|XP_004501205.1| chr1 23819265 23825237 +
1 domain prediction
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Lj1g3v2158710.1
n.a. PREDICTED: filament-like plant protein 4-like isoform X1 [Cicer arietinum] gi|502131334|ref|XP_004500951.1| chr1 26079483 26084467 +
1 domain prediction
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Lj1g3v4446890.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr1 51952427 51959170 +
1 domain prediction
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Lj2g3v1200010.1
n.a. PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] gi|356498101|ref|XP_003517892.1| chr2 19193879 19199379 -
1 domain prediction
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Lj2g3v1200010.2
n.a. PREDICTED: WPP domain-interacting tail-anchored protein 2-like isoform X1 [Cicer arietinum] gi|502094911|ref|XP_004490326.1| chr2 19193879 19199379 -
1 domain prediction
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Lj2g3v1890960.1
n.a. PREDICTED: filament-like plant protein 7-like [Glycine max] gi|356496915|ref|XP_003517310.1| chr2 28121558 28128613 -
1 domain prediction
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Lj3g3v0429700.2
n.a. PREDICTED: proton pump-interactor 1-like [Cicer arietinum] gi|502084555|ref|XP_004487714.1| chr3 4445457 4450180 -
1 domain prediction
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Lj3g3v1013210.1
n.a. PREDICTED: kinesin-3-like isoform 1 [Glycine max] gi|356543172|ref|XP_003540037.1| chr3 13532124 13540726 -
1 domain prediction
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Lj3g3v2995960.1
n.a. MAR-binding filament-like protein 1-1 [Medicago truncatula] gi|357471881|ref|XP_003606225.1| chr3 37336365 37339769 +
1 domain prediction
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Lj3g3v3557050.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508701278|gb|EOX93174.1| chr3 43352183 43362236 -
1 domain prediction
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Lj3g3v3557060.1
n.a. Uncharacterized protein isoform 9 [Theobroma cacao] gi|508701286|gb|EOX93182.1| chr3 43354022 43357337 -
1 domain prediction
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Lj3g3v3639220.1
n.a. PREDICTED: nuclear anchorage protein 1-like [Cicer arietinum] gi|502146809|ref|XP_004506617.1| chr3 44024456 44042441 -
1 domain prediction
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Lj3g3v3639220.2
n.a. PREDICTED: nuclear anchorage protein 1-like [Cicer arietinum] gi|502146809|ref|XP_004506617.1| chr3 44024456 44032497 -
1 domain prediction
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Lj3g3v3639230.1
n.a. PREDICTED: nuclear anchorage protein 1-like [Cicer arietinum] gi|502146809|ref|XP_004506617.1| chr3 44027262 44033301 -
1 domain prediction
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Lj3g3v3639330.1
n.a. PREDICTED: myosin-9-like [Cicer arietinum] gi|502082410|ref|XP_004487158.1| chr3 44058098 44063285 -
1 domain prediction
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Lj3g3v3639360.1
n.a. PREDICTED: nuclear anchorage protein 1-like [Cicer arietinum] gi|502146809|ref|XP_004506617.1| chr3 44075473 44076945 -
1 domain prediction
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Lj4g3v0002130.1
n.a. PREDICTED: intracellular protein transport protein USO1-like isoform X2 [Cicer arietinum] gi|502126589|ref|XP_004499365.1| chr4 122876 135981 +
1 domain prediction
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Lj4g3v0002130.2
n.a. PREDICTED: intracellular protein transport protein USO1-like isoform X2 [Cicer arietinum] gi|502126589|ref|XP_004499365.1| chr4 122876 138290 +
1 domain prediction
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Lj4g3v2370480.2
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356563867|ref|XP_003550179.1| chr4 32642746 32650367 +
1 domain prediction
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Lj5g3v1003380.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr5 15820363 15828071 +
1 domain prediction
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Lj5g3v1003390.1
n.a. Centromere protein [Medicago truncatula] gi|357440635|ref|XP_003590595.1| chr5 15822755 15829291 +
1 domain prediction
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Lj6g3v2006840.1
n.a. At1g28410 [Arabidopsis thaliana] gi|44917437|gb|AAS49043.1| chr6 23633368 23635764 +
1 domain prediction
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Lj6g3v2006840.2
n.a. At1g28410 [Arabidopsis thaliana] gi|44917437|gb|AAS49043.1| chr6 23633368 23635764 +
1 domain prediction
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LotjaGi1g1v0105700.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G58320.2 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4KEW8|NET4A_ARATH Protein NETWORKED 4A; TrEMBL-Plants: tr|A0A151U0Z5|A0A151U0Z5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105700 LjG1.1_chr1 16338620 16343885 +
1 domain prediction
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LotjaGi1g1v0105700.2
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G58320.2 Kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4KEW8|NET4A_ARATH Protein NETWORKED 4A; TrEMBL-Plants: tr|A0A151U0Z5|A0A151U0Z5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0105700 LjG1.1_chr1 16341259 16343480 +
1 domain prediction
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LotjaGi1g1v0159300.1
n.a. Filament-like plant protein; TAIR: AT1G21810.1 filament-like protein (DUF869); Swiss-Prot: sp|Q8LLE5|FPP_SOLLC Filament-like plant protein; TrEMBL-Plants: tr|A0A1J7HV06|A0A1J7HV06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0159300 LjG1.1_chr1 29482391 29487716 -
1 domain prediction
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LotjaGi1g1v0159300.2
n.a. Filament-like plant protein; TAIR: AT1G21810.1 filament-like protein (DUF869); Swiss-Prot: sp|Q8LLE5|FPP_SOLLC Filament-like plant protein; TrEMBL-Plants: tr|A0A1J7HV06|A0A1J7HV06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0159300 LjG1.1_chr1 29482474 29487478 -
1 domain prediction
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LotjaGi1g1v0305100.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT5G05180.1 myosin heavy chain, striated protein; Swiss-Prot: sp|Q84VY2|NET4B_ARATH Protein NETWORKED 4B; TrEMBL-Plants: tr|A0A072UB28|A0A072UB28_MEDTR RAB6-interacting protein, putative; Found in the gene: LotjaGi1g1v0305100 LjG1.1_chr1 74417153 74420771 +
1 domain prediction
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LotjaGi1g1v0398000.1
n.a. Myosin heavy chain-like protein; TAIR: AT4G31340.1 myosin heavy chain-like protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3T954|I3T954_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398000 LjG1.1_chr1 88455728 88462818 +
1 domain prediction
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LotjaGi1g1v0398000.2
n.a. Myosin heavy chain-like protein; TAIR: AT4G31340.1 myosin heavy chain-like protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3T954|I3T954_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398000 LjG1.1_chr1 88455728 88462818 +
1 domain prediction
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LotjaGi1g1v0427500.1
n.a. Filament-plant-like protein; TAIR: AT1G19835.1 filament-like protein (DUF869); Swiss-Prot: sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4; TrEMBL-Plants: tr|K7KHS2|K7KHS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0427500 LjG1.1_chr1 92159943 92165675 +
1 domain prediction
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LotjaGi1g1v0427500.2
n.a. Filament-plant-like protein; TAIR: AT1G19835.1 filament-like protein (DUF869); Swiss-Prot: sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4; TrEMBL-Plants: tr|K7KHS2|K7KHS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0427500 LjG1.1_chr1 92159958 92165695 +
1 domain prediction
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LotjaGi1g1v0716200.1
n.a. Kinase interacting (KIP1-like) family protein; TAIR: AT1G03080.1 kinase interacting (KIP1-like) family protein; Swiss-Prot: sp|F4HZB5|NET1D_ARATH Protein NETWORKED 1D; TrEMBL-Plants: tr|K7KFA9|K7KFA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0716200 LjG1.1_chr1 128468670 128479491 -
1 domain prediction
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LotjaGi1g1v0776900.1
n.a. Coiled-coil domain-containing protein SCD2; TAIR: AT4G08630.2 fas-binding factor-like protein; Swiss-Prot: sp|Q8RWD5|SCD2_ARATH Coiled-coil domain-containing protein SCD2; TrEMBL-Plants: tr|G7L0Q7|G7L0Q7_MEDTR Ripening-regulated protein; Found in the gene: LotjaGi1g1v0776900 LjG1.1_chr1 134894491 134902923 +
1 domain prediction
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LotjaGi2g1v0272500.1
n.a. WPP domain-interacting tail-anchored protein 1; TAIR: AT5G11390.1 WPP domain-interacting protein 1; Swiss-Prot: sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1; TrEMBL-Plants: tr|A0A1J7H1F3|A0A1J7H1F3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0272500 LjG1.1_chr2 74335203 74339299 +
1 domain prediction
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LotjaGi2g1v0272500.2
n.a. WPP domain-interacting tail-anchored protein 1; TAIR: AT5G11390.1 WPP domain-interacting protein 1; Swiss-Prot: sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1; TrEMBL-Plants: tr|A0A1J7H1F3|A0A1J7H1F3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0272500 LjG1.1_chr2 74335203 74340306 +
1 domain prediction
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LotjaGi2g1v0288000.1
n.a. WPP domain-interacting tail-anchored protein 2; TAIR: AT1G68910.1 WPP domain-interacting protein 2; Swiss-Prot: sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2; TrEMBL-Plants: tr|A0A151R7D9|A0A151R7D9_CAJCA WPP domain-interacting tail-anchored protein 2; Found in the gene: LotjaGi2g1v0288000 LjG1.1_chr2 76114423 76120820 -
1 domain prediction
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LotjaGi2g1v0288000.2
n.a. WPP domain-interacting tail-anchored protein 2; TAIR: AT1G68910.1 WPP domain-interacting protein 2; Swiss-Prot: sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2; TrEMBL-Plants: tr|K7K7Y5|K7K7Y5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0288000 LjG1.1_chr2 76115084 76120776 -
1 domain prediction
 –