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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0458600 |
| Transcript ID | LotjaGi3g1v0458600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1KF52|I1KF52_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0458600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87321498..87328263) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGGCACTTTCGACTCCTCACTCATACTCACACTCACACTCAGTGCGTGTTTGTGTGTAGTGGCAGTTTCTTCCAAAC AAACAAAATCCGAAAGAGAAAAACCCGTGGATTCCAAGGCACGCAACATCATCTTCATCACTCTCCTCTCTTATCTCTTC TTCTACGATTCCCAAGATACTCGTAGATCCCTCATGAGCCGCTACGACCCCAACCCCTTCGAACACGAAGAGGTCGAGGT CAATCCCTTTGCGGTCAGTAGTTCCCTTCAATCTCCTCTCACATTTTCTCATTCCAATTTCCTGTTTCTCGCTTCGCTGT GTAATTTTTCATGTAAATATCGTTTTTATTTTTTTGTATACGGAACGGTTGGACTTGGATTGGATTCGATCCTTTCCCTT TGTTGCATTTTAGGTTATTGATGAATTGGAACTCGTAATGTAGTGTACATAAATGCGTCTTGGTTAGGTTACTGTGGCTG GCTTCTGGATGAATTGTTGAATGTGATTGCATAATTTGAATGTTGTTGACTGTCACTCAATTTTGAGGTTTATCTGCTTC GTATCTCAGATTAGGTCTTTCCAAAACCTAAATTTTGAGAAAATTGTTATCTGATTTTGTTTTGTTTTTACCAACGGGAT GTTTACAGTTGTTGAACCATAATTTTGCATTATAAGGCTGAACAACATTTAGCCATTTAGGTTTTAAAAAACATATATGC AGGCTTTATTTTTTTGGTGGATTAATTCGTTCAAGCATGCTTAGGGCCATTAATTTGTTTAAGCATTTGTGACAGAACCA TTACAAACAGTGGTTGATCTCGGGACGGTTTTTTGGGGTGGTAAGGTGGTTGATTAATGTAGTTAATTTATAAATATATT TGCTGAGTAATGGGGTTTGAAAAGAAACTGTGTCATTTTTCTCCTTATATCTAGCTTCCGTGTTAGACTATACATGGTTT GTTTTATATTTGATCTTCACCCATATATTTTTGAAATGAGTAAAACTTTGAGTATTGTGTTGCGTTTCTTATTTTATTAT CATTTTAAGGACTAAAGCATTAAACATTTTCATTAATTATATTAGAAAGGAGCAGCAAAAGGATCAGGGCAATCAAGTTA TGGTGGAGGTGCATTTTATACTACGGTAAGTTTTCCCTCAACTGAGACCATTGCATAACAAGCAGCACTTCACATTACCA TGTTTTGACAAACATAGGAATCGGCGGTTAGCTTTTGATATGTATCCTCTGTATTTTGATTGTGAAACGGTGCAAGGGTG TTAGCTGGAACAGGTCTTACTACCTGGAATTTGAAAAACTGGAATTTTGATATTGTAGGATTTTTCCCTTCATAAGCAGT CTAGGGACTTACTTATTCTTGATACGCTGGAAGGTACCCATCGGTAGTGTGGTAAACTTGATAAGGTTCCACCGGAAGAA AAGGCTTTGTGTGAGTTATCTGAAGGCGGTCATGAGTTATTCTTTGTTTGGAGTTTCGAGGCTATGGAAAATAAAATCTG ATCATTGGATAATTTAAGAGTGGAGCTTGCTTCTTAGTCTGTCAGTGTTCAATGTGCTCTTGTCTTGTAATCTTATAAAT TAGTAGATTGCCTAGGTTTATTCCCCATATTGATTTCATAGTAAGTAGGGCAGTACAAGTTTGCAACTCAAAGGTCTGCA ACAGCTAAATTTTGGTCCGACTTGCAAATATGTTATATTGTTTCTGTTTCTTGAAGTCGAGAACCAGTTTATTTCAGTGT TGTCAAATAGCGGTGCTTATTTATAGCGTAGCGCTCTGAGGGCTCACCGCTATTCTGCCGCTATTTTCCGCTATGAGGGC TTGAAATAGCGGATTTTCAGCTTTCTGCGATTAACAACAATGGTTTATTCCTGTGAAGCTTATTTTATTTTCTTGGTACT TTTTGTGTTATTCCTTTGGTAGACAGTTGGTTTTGGGATGGAGGTAGATTGGTGCAATTTTTTGCAAGCTGGTGTGGTGA CTTGGCTGTGTTCTTTTCTGATAATATGTCAACAGGAAACTGAATAAATGGAGCAGATACTGTAAAAATATAAGCGAACA GTTAGCAACTTTTTGTTACTTTTCAAGCATAAGATGTAAAGAAAATATTGTTTATTTATTAACTTAATACATAATTGTTT GAAATGGAAGAACCCTGGAAGTGTTCCCTCGGCAAACTCAAGGCTCTCACCACTTTCTCCAGAGCCTTATGAAAGTGGGG CAACTATTGACATCCCTCTTGACAGCTCAAAGGTAGACTAAATTGTGAAAATGTTGAAATAAATATCAAAACTATTTGTC TCAATGCTGTATTGACCAAAGATTTAATTATGTTCTTTTTAACTTTAGGATACCAAAGCGAAGGAGAAGGAACTTCAAGC TAAAGAGTCAGAATTGAAAAGAAGGGAACAGGTGATCCATCCTAATATGTTGCTTGATATCTTTAAAGCACAAGCACACA ACTTCCATACAAGCTAAATACTTTGTTTTTCAGATTAAACATTTCGGGTGTGTTTGGGTAAACAACTTAATTAAGCGCTT ATTCATAAACTAATTTGACAAGCTTAATGAAATAAGCTCAAAATAGGTTATAAGTAGGTATCAGTGCTTATTTATAAACT AATCTGAGCAGTGGATGAAAAAAAAATCAAAACAACTTATAGGTTGTAAGATAAGGTCAATAAGCTACGGGGCCTTCATT GTTATTTTATATAGGGTGAATAAATTGTAATGATTCTTTTTCTATCAATTTTAATTTCATATCATTGGGCCTAATTGGTA GCATGAGTGGCTTATTTTAATTCTTCAATCATGTGGCCACTTGTCCTTTTTCTTTTTAATATATTAGTATTACTCTATGG GTAAACCTTGGGTTGAGAATTTAGTTCAGTTTTTTAAGTAACTGTTATGTCAGATTTTTAACACCACATTTGTTTTCCTT AACCATGCTATAGATTATCTTGGCCATTAAGCTATTATATCAGCAGTGTAGTCAGGAAATTGATAATCTCATGATTTTTT TTGTAGGAACTAAAACGAAGGGAGGATGCTATAGCACGAGGTGTTTGAATTCATATATTCTTACAGAAGCTAACAAGAAC AGTGTCATCATTCTGGTGTTTTACATTTTTTTTTTGGTTTACAGCTGGAATAGTTATAGAGGAAAAAAACTGGCCACCTT TTTTCCCCATCATTCATCATGACATTGCAAATGAAATACCAATACATCTTCAAAGGATCCAGTATATTGCATTTACGACA TGGTTGGGTATGTTAAACTATATAACTTCTGTCTAGAGTGTGTTAAAGTAGATCTACTTGCTTCTTGATAATTAATATTA ACAAAATCTAGATATGTTTCTCTTATGAATTATTATCTGTAATCTGTAATTTGTAATTGATATGGAAGCTTTTAGTATAA TTCACAAAATGATTTCAAAGCCGTTTTATATATGAGCGACAAAATTAGAGCTGAAATTGATATTTTACTTAAAATAAAAA TTATAAAAGTACTGTCATGTCTTTCACTTAATATTTCCAGTATGTTAGTAATTAGTAACCTTATGTTTTGTTGTTATATG CTTGTTGAATGCATTACCAAACTTCATTAATCGAAAACCTACATGTGTTTGTCTTATTAGAAATATTATTTCCTCAGTCC TCTTCATAAAAGACCTGCAATTTTTCAAGGAAGTTTCATGTTTTAAAGTGAAAGTAAATCAAACTACTTTCAACTGTGTC TATGTTCTGCTTGCGTGATAATGTTTATCAGATTCCATTAACTATAGCAGTTCTCTTCTGTGTAAAATAGGCATTGCTAG TGCGGTCCTAAAGAAAATCACGTTATAACTTTTAAAGTCCCCCCCCCCCCCCACCCTCTCATTTCCACAATCCTTTATTG CACATGGTTCAATATCTAGAAAATATTGCATAATATTGTGATTGTATTTTAGAATATTTTTTAGTATCTTTGATAATTTC TTAAAGTGTGTTTTCCGTAGTTTATCATTTTGCATGTTTTGTTTTCGTAATTTAGTATTTTAGATCATTCATAATTTTAT TGTGTCCTGTCCTCCTTTACTAAATCCCTATAATTCCAACAGCATCAATATGCTATAAATACTCATTTTTCTTAATTTAA TTATTGTATGAGTCTTAGTTTTTCATTTTTGAAATAATCTGCAGGTTTGGTTCTGTGCCTCTCGTGGAATTTTGTGGCAG TTACCACTGCTTGGATCAAAGGAGAAGGTTTGTCTTAAAAGTGTCAACTGAAAATGGGTCCATTAGTCTTGTTAGTTCAT TCTTAATATTTAGAGACTTGTTTTGTGATGTAGGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGAGCT CCAGGATCCTATGTAATGTGGTATCGCCCTCTTTATCGTGCTATGAGGTACTGTTCAATATGATTAATCCAATTTTTGTA ATTTAGCATAGGGACATCAGTTCATAAAATTTTCAGCCTGTGTTAACCTCTGAAAAAAATGTAAAACATGATGATCTATA TCATCCAGCTTGATTTTGCTCAATTATGAAGTTTCAAATATTTCACATTTTTTCTGTAAGAGCATTTTGTACTCCTGGAT AACATGCGGGGAGAATGTGAGCATTTGATAGGCATTACTATCATTGCAAAAGTTGATAAATTTTTTCGGTGCTAAGTTTA CCTTCTGCAATTCTTTGATCTGATTTTTTCTGAAGAGGGACACCAGAAGTATAAGGGTTATGAGAGGGATGGGGGAGAGG GGTGGACTCTGTTGAGGCTTTACCTTCTTCCAAATTGCATTAAAAAGCATTGACTTGTAAAATTGTGATTTTGTCTGAAC ATTTATCTTGTGTCCAGAAACCAGTCTACTGCATGGATTATTCAATGGTTTATTATTGATTTTATTGTCTGATATTTCTG TTGTTTCTGTTTTATAATTGTGTACCGCCTCCTTTTACAGGACTGACAGTGCGCTGAAGTTTGGCTGGTTTTTCTTGTCA TACGGGGCAAGTTTTTTTTTTTTTGTATTTTCTCACTGCACTCACTTATTCTGCACTAATTTTGTGACTCATCTCGTTTT TACTATTTTCTATAAGCAGTTGCACATCGTCTTTTGCATTTTTGCTGCAGTTGCGCCACCAATTATATTCAAAGGAAAAT CTCTCACGTGAGTGTCCTTCTAATCTACACTTTATGTTGGTATTTTGCAAACTAATTATCTTCAGCCGCTACTCTTTTAT TGATTTGATCTTAGGGAGGCAAGGAAAACACTGCAGACTGTCTCTAATCATGTATTTATTGTATTTTTTGTTGTGTTTGG GTTGACTGTATGTTCTCGATGATTTTGTAGTTCAATAATATGAGAAAAAAATTGTTTAATCGTCCACTTCTGCTCGAACT AACTTTTGTGTTTTATGCTGTTATGTTGTGACAGAGGTATTTTGGCTGCAATTGATGTGTTGGGCGATCATGCATTGGTT GGGGTATGTTCTAACTTCTAAATGTGTGCCTCATCACTTTTTTTTCCCCAAGTCTCATTTACATATATCTCAAGTGGTTC AAAAGTTTAGAGGATAAATGAGAGGTTAAAATCCCTTCCCTTCAAATTTTGCCCCCTCCAAAAGTGTGGGGGGGGGGGGG GGGGGGGGGGGACTTTGAAGGGAAGGGAAAGTGGCTTATAATTTATGGGCTGTAAGGTACTAAGGATTAAATTTCTTTTT TTTTTAAATTTCAAAACTGCATTTAAATATACTACCCTACCTATTTTAGGTAATTACAGGAGTATTTCTTGGCTTCTATA ATGCCCTTTAGCTTCTTAGAAGTTGCAGTTGGATACTATAATTACTGTTTCCGTCGGGTATATTTTCAAGTCATGATTTC ACTTTTAATGATGTTCATACTTGTGCTGAGTTGCAGATATTCTACTTCATTGGGTTTGGATTATTCTGTCTTGAGTCACT GCTGAGCATCTGGGTTATTCAGGTTTCTATAATTTTTAACACTGTAATTATTAGTAAGTTGGGATGCTCTCTTCTCTCCT TAAACTTTCTTGTTTGACTATTTGCAGCAAGTAATGATGTACTTCCGCGGCAGTGGCAAGGCTGCAGCGATGAAGCGCGA GGCAGCAAGAGGGACAATGATGGCAGCTCTATGACGTGGCAGTAGATAATGTTTTCCCCCTATGGTTATGCCCGGAAATT GATTTCCTCAGTTACCATTATCTTATGCCTTGCTTACTGTACTTGGATTTATTTTCTTGGTTTCCTGGCAAAGATTGAAT CAAACCACATGATTAAGATAGAAATCTTAGTTGTGCATATATAGAAACATTGTTTGAGATGGCTCTCTCGGCAGATGACT TTTTCATAGGATTGTTGGTGGTATTTTTATAAACAAATGGTTTATAATTCAACTGAATTACATGTTCTGCTGACTTGACA ATCGTGTCCTTTTTAACGAGATATAATTTTATTTGATCGTCGAGGTGATTAAACCATCACCTGCGAATAGATACTAAAAC TACCACAACGTTTTAAAACTAGATAGTCCTCTTCATCAGACCCCAGGCCCTTGCTGCAGACACTGAGCTAGGCGCCGGTG ACTCTCCCTTTGACTCCCTGGACTTATTGATGCTGGAGAGTTTCCTATGTTCCTAACATGTCCTCCTTTCCATCACGAAC TATTTTGATCTTAGCCGTATTAATTTTAAACTGTGATCGCAATTGC
CDS sequence (LotjaGi3g1v0458600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGCTACGACCCCAACCCCTTCGAACACGAAGAGGTCGAGGTCAATCCCTTTGCGAAAGGAGCAGCAAAAGGATC AGGGCAATCAAGTTATGGTGGAGGTGCATTTTATACTACGAACCCTGGAAGTGTTCCCTCGGCAAACTCAAGGCTCTCAC CACTTTCTCCAGAGCCTTATGAAAGTGGGGCAACTATTGACATCCCTCTTGACAGCTCAAAGGATACCAAAGCGAAGGAG AAGGAACTTCAAGCTAAAGAGTCAGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAGGATGCTATAGCACGAGC TGGAATAGTTATAGAGGAAAAAAACTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAATGAAATACCAATAC ATCTTCAAAGGATCCAGTATATTGCATTTACGACATGGTTGGGTTTGGTTCTGTGCCTCTCGTGGAATTTTGTGGCAGTT ACCACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGAGCTCCAGGATC CTATGTAATGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCGCTGAAGTTTGGCTGGTTTTTCTTGTCAT ACGGGTTGCACATCGTCTTTTGCATTTTTGCTGCAGTTGCGCCACCAATTATATTCAAAGGAAAATCTCTCACAGGTATT TTGGCTGCAATTGATGTGTTGGGCGATCATGCATTGGTTGGGATATTCTACTTCATTGGGTTTGGATTATTCTGTCTTGA GTCACTGCTGAGCATCTGGGTTATTCAGCAAGTAATGATGTACTTCCGCGGCAGTGGCAAGGCTGCAGCGATGAAGCGCG AGGCAGCAAGAGGGACAATGATGGCAGCTCTATGA
Protein sequence (LotjaGi3g1v0458600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRYDPNPFEHEEVEVNPFAKGAAKGSGQSSYGGGAFYTTNPGSVPSANSRLSPLSPEPYESGATIDIPLDSSKDTKAKE KELQAKESELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIANEIPIHLQRIQYIAFTTWLGLVLCLSWNFVAV TTAWIKGEGPTIWFLAIIYFISGAPGSYVMWYRPLYRAMRTDSALKFGWFFLSYGLHIVFCIFAAVAPPIIFKGKSLTGI LAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREAARGTMMAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 304 | 304 | 2.7E-165 | ||
| MobiDBLite | 1 | 78 | 78 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 304 | 304 | 2.7E-165 | – | |
| Phobius | 1 | 139 | 139 | - | – | |
| MobiDBLite | 32 | 56 | 25 | - | – | |
| Coils | 73 | 103 | 31 | - | – | |
| Pfam | 113 | 284 | 172 | 3.4E-55 | ||
| Phobius | 140 | 165 | 26 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 166 | 170 | 5 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 171 | 192 | 22 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| Phobius | 204 | 231 | 28 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| Phobius | 251 | 275 | 25 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 276 | 304 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0458600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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