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IPR007273

Source: InterPro

Description

IPR007273 is a SCAMP.

<p>In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [[cite:PUB00009874]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015031
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj2g3v1536240.1
– PREDICTED: secretory carrier-associated membrane protein 4-like [Cicer arietinum] gi|502162283|ref|XP_004512452.1|
Domains
10
Lj3g3v0235200.1
– PREDICTED: secretory carrier-associated membrane protein 1-like isoform 2 [Glycine max] gi|356517548|ref|XP_003527449.1|
Domains
8
Lj3g3v2779520.1
– Secretory carrier-associated membrane protein 1 isoform 1 [Theobroma cacao] gi|508707450|gb|EOX99346.1|
Domains
4
Lj3g3v2861390.1
– Secretory carrier-associated membrane protein 1 isoform 1 [Theobroma cacao] gi|508707450|gb|EOX99346.1|
Domains
11
Lj4g3v0450030.1
– PREDICTED: secretory carrier-associated membrane protein-like isoform X2 [Cicer arietinum] gi|502142511|ref|XP_004504993.1|
Domains
10
Lj6g3v2078140.1
– Secretory carrier-associated membrane protein [Medicago truncatula] gi|357446395|ref|XP_003593475.1|
Domains
10
Lj6g3v2078140.2
– PREDICTED: secretory carrier-associated membrane protein-like isoform X1 [Cicer arietinum] gi|502142509|ref|XP_004504992.1|
Domains
10
LotjaGi2g1v0340400.1
– Secretory carrier-associated membrane protein; TAIR: AT1G32050.1 SCAMP family protein; Swiss-Prot: sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane protein 4; TrEMBL-Plants: tr|I3SNS8|I3SNS8_LOTJA Secretory carrier-associated membrane protein; Found in the gene: LotjaGi2g1v0340400
Domains
10
LotjaGi3g1v0441500.1
– Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1KF52|I1KF52_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0441500
Domains
10
LotjaGi3g1v0458600.1
– Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|A0A0B2S8U1|A0A0B2S8U1_GLYSO Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0458600
Domains
13
LotjaGi3g1v0458600.2
– Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1KF52|I1KF52_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0458600
Domains
10
LotjaGi4g1v0051300.1
– Secretory carrier-associated membrane protein; TAIR: AT1G61250.1 secretory carrier 3; Swiss-Prot: sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane protein 3; TrEMBL-Plants: tr|I3SJL2|I3SJL2_LOTJA Secretory carrier-associated membrane protein; Found in the gene: LotjaGi4g1v0051300
Domains
10
LotjaGi6g1v0337200.1
– Secretory carrier-associated membrane protein; TAIR: AT1G61250.1 secretory carrier 3; Swiss-Prot: sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein; TrEMBL-Plants: tr|V7CM44|V7CM44_PHAVU Secretory carrier-associated membrane protein; Found in the gene: LotjaGi6g1v0337200
Domains
10
LotjaGi6g1v0337200.2
– Secretory carrier-associated membrane protein; TAIR: AT1G61250.1 secretory carrier 3; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1MEC0|I1MEC0_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi6g1v0337200
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14