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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0490300 |
| Transcript ID | LotjaGi3g1v0490300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT5G59250.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic; TrEMBL-Plants: tr|I3SAW5|I3SAW5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0490300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90844691..90850687) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAATCAATCAATGAGTTAAAAAATATCTTGGGTAGTGTCATTGTGCATCACACTACATTCTCACTCACATGCTGTCT CTTGTTCTTGCTGCCTCCAATGGCATCATCATCAACTACTCTCTTCAATTTCACCCTATCATCTAACTCACTTCTTCACC ATCAAAGGACAAAGAGTTCAAAACCTCTTCTCTCTTCCTCTCGCATCATCAACCAACACACTGTTTCTTCCATTAACCAC CATTTGGTTCCCACACGCGTCACATATCCACTTCTTCCTTCTTCTTCTGCTCCTAACAGCAGATTCCACGTGAGGTCCCA GAAGCAGAAGGTGTATTCTGCTGGAGGAAAATCGGAGCCGCTTGCTTCTGATGCAAAATACCAAGAGGAATTCTCTTGGT CTTCTGTGATTCTTCCGTACGTTTCTGTCACTGTTCCTTCCTTCATTCATTTTTAATTTCTAATGCAATGCTGGGTAGTA CAAGTGAATAGCATACAAGTGTTGTTGTGTGTGGATAAATGTTTTGTGATTAATGTGTGCTCTTTCTTGCTGCATAGACA CTGAAAGTAACCACTTACATGAAATCTAAACTTTGATGAGTTAAGTAGCAAGCTTTAAGACACTTGACTGAATTTCAATT TAGCTTAGGATTGATTCAACAACATATGTAAAACTGTAGTTCTTAGAGTTGATTGATCAGGATCATGATCATTATGGCCT TGAATTGAGAACTTACCAGGTATAAATTAACCACAAAAGCTAATTCAATGAGAAGAACTGTCCAAGTCATTATGAGGAGA ACTTTGGGCATATTTGTCAAAGTGGGATCTTAACTTAAGTAACATATCAAAGTGTTTATTAAACTTGGTGCTAATACTTT GCTTCTAGAGCTGAGGCAGGACTAACTAATGATTTGGAACTAATATACAGGGAGCTATGCCTGATTAATTGTACTTAAGT TACCTTATTCCACTGTCAGAAAAGCATCAATCCTAGCTTAGTCATCAAGCATTGCAAATTTTAAAATATATGAGCTCCTG GTGTGCCTATGTCAATTAATTAGGGCTTTGTTTCAAAATTTAGGTTTTTGTTCCCTGCATTAGGTGGCTTGTTATTTGGT TATGATATCGGTGCCACCTCCGGTGCTACAATTTCACTGCAGGTAAGTTTGTTACTCAATGTCTATCAATTAAATTTTGT TCTGTTGTTAGTGTGGTAACGTCAGTAATTGATTTTTCATATTTTTTATTTGGATTCACAGTCACCTGAGCTTAGTGGGA TAACTTGGTTCAATCTTTCTTCCATTCAGCTTGGACTTGTGGTATGACTCCTGCATCATAGCTGACCAACATCTTTCAAA TTTATGGAAAAGTCATTGCCATATTTATTAATTAGAATTTAACTCCTAACATCAAATATAGGTCAGTGGTTCCCTATATG GGGCTCTTCTTGGCTCAATTCTTGCATTTGCTGTTGCTGATTTCCTTGGTAAGTTCTTTGGTTACATATATTAACCAGAA ACTGAAGCTTCTTTTGATTCTCATTTTCCTTTCTGAATATATCAACTTTGCTGAAACATTAGGGAGGAAACGGCAACTTA TTGTTGCAGCCTTGTTGTATATACTTGGTGGTGCAATCACTGCTGCTGCACCAGAACTTAATGTCCTCTTAGCAGGAAGG CTGCTTTATGGGCTTGGTATTGGTTTGGTAGGCTATGTCGAACCATGACACTTACTGTAATATTGATAATTCCTGCACCA TCTTACAAGAGAAATGAATTACAGGCCATGCATGGGGCTCCTTTATATATAGCAGAAACTTGTCCATCACAAATCCGTGG GACTCTAGTATCACTAAAAGAGCTCTTCATTGTCCTGGGGATTCTGGTATTACATTTTTCCTTCTCTGAATTTTTATTTG ACTAAATAATTTACTGATGTGGGAACTAAACTATTGTGCAGGGGGGCTATTTTGTCGGAAGCTTTCAGATTAGTTCAGTT GGGGGATGGCGATTCATGTATGGATTTAGTGCTCCAGTTGCCGTGTTAATGGGACTTGGAATGTGGACTCTCCCCGCTTC TCCACGGTGGTTGCTTCTCAAAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCAATTTTTTCCCTGA GCAAATTAAGGGGCCGACCACCCGGTGATAAAGAATCCGAGAGGCAAATAGAAGAGACCCTTGTCTCATTGAAGTCTGCC TATAAAGATCAGGAATCCGAGGGCAATTTCTTAGAGGTTTTTCAGGGTCCTAATCTGAAAGCCTTCATAATTGGTGGGGG GCTAGTCTTATTTCAACAGGTTGTTCCATTTCAAATCTTCAATGCAATGAGTCTTTCCATAATTATCATAATTATGTTTG CACGCTTCCAGTTTACTCATGTTATATTGAAGGAAATATGGAGAGTTCTTTCTGCTATTTGTCTGACTAGACTCCTTATT ACAATAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCAATTCTCCAGGTACTTTACATTTACACTCTATTGT AAATGAGATTTTCTGTTTTTACATCTTGATCACTTTAGATTATATTCTGTCCTTTATGTCCAGAGTGCTGGATTTTCAGC TGCATCTGATGCTACTAAAGTTTCAGTTGTTATCGGCTTATTCAAGGTATACCTACTTACTTGAATTTTACCTACCTGAG AAAAGCGACCCCTTTATCACACTGGTAATAACTTGTTTCGTGATTGAACAACATGTAGTTACTAATGACATGGGTTGCTG TCCTAAAAGTAGATGATCTTGGGAGAAGACCTCTGCTGATTGCAGGCGTCAGTGGCATAGTAGGAATTCAATCAACAAAT CCATACAGTACTTCATTGCAACTTGTCAAATGCAAATGGTTATTCCTTTTTTGTATACTTTTGTAGGGTCTCTCTTTAGG TCTCCTGTCTGCTTATTATAAATTTCTTGGAGGATTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCT ACCAGGTAAAGGTTTTTAAGTCATTGGTCCAGCTTCCTTTTCTTGTCATGTTCAACTTGAATATAAGTCCTGTTCTGTAG TATTAATTAACTTTGGCCATACAATTGGGACTCTAGGATATAGGCCTCGTTTGGAAGAACTCATTTGAACTTATCTTATA GCATAAGGGCTAATGTAAGTGTTGAGGAGACCTTATGTAAATACCTATAAGTTGATTTGAGCTTGCTTATTTTCATAAGC TATTCACATTAGCTCATGAGTAAGAGCTTATACTTATCCATAACCTATTTTCAGCTTATTTCATTAAGTTTATCTAATTA ACTTATGAATAAGCCCTTATTTCCATAAGCGCTTAATTAAACTGTTCACCCAAACGCACTCATAGATTTTCATGAAATTC AATTCAGAGACCTCCGTGTCAATAAAAGGAAGAACCTTGCAATAATTCATATTTAATATTACCACTGTCCTTGAGTCAAT GCGGTTTAAAGTGTTGTAGGAGATTTATGCCAAATTGCATTTGTATTGCAGATATCATTTGGGCCAATAAGCTGGCTTAT GGTATCAGAAATCTTCCCAATTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTG TCGTCACCTTTGCATTCTCACCATTAAAGGTTTTCAATTCTTTTGTTGAAGATAACTTTATATCATTTTTAACTTTGTCT GAGTGCTTTTGGAGTTTATATCTATGTTCACTTGTTCTACAGGAGCTTCTAGGAGCTGAGAACCTTTTTCTCCTTTTTGG TGCCATTTCTTTAGTGGCACTTCTGTTCGTTATATTTTCTGTCCCTGAGACTAAAGGCTTGAGCTTAGAAGAAATAGAAT CCAAAATCTTGAAGTGACAGCTTAAACTAGCACTTTTTGCTGTGAGCACGGTAAAGTTTGTAACCTCTTGTATATCTCCT GTATGGGATTTGATGGTGATGAAAATGTTTGCAGTAACACGATTGTATCTAACCAAGATACTCAAATCACATAAGGGCGC AGGCTAATGATTTTATTATCCATGTTGAATACAAATATACAATGCATTGTCCAGGTCATTACACCCAGAACACCCTTTAT TACATACAAATGGAATTTTACAAATACAAGGGAAATTATCTTCCAGCCTAATTCTCAGGTACATACAAAAAAGGGTTGAA CAAAAGATGAATACATACACAATAGTACAAATTGCAGAAAACACATCATGGAGACTTTCAATTTGCCTGAAGAATTCTGC CATGGTTTTCTTCCTGAGCCACTGCATATTTACAAAGATCAGATGAAATATATGTTTATGCTGAGATAAAATAATTTTTA TGGAGAAAGCATAACGTTCAATTATATATCATATTATGATCCGGTTGGTACTTTACCTTCTTGAGCATTGGAAGATACTG GAAGTTGAGATGAAGCTCGAGTTGCAGTGGAAGATGCTGGGGTTTGAGATGAACTGGTAATTGTCGTGTTTGCGTCTACA TACTTGTTTGGTTGCTCATTTCGGAGCAAAGAAGTAACAGCTTCTCTAACCTTCTCCATCACACCTGCATCACCAGGAGT TCTCTTAGGACTCATTGCTTCAGATATCACCTTAGACAGAGCCTTGTCATCTTCCCCTGGCTCAAACTTGTTCAAAAAAT ACTCTTTCATGGAAACACCCTTGTCCCATAATTGCGAGCTGGTGGGACTGGTGCTCTTTCCGATTGGCGGAGCAGACGAG GGGGATGGAGGTGGTGCAGCTGCAGCTGCCGAAGGCGATGAAGTTCGAGTTGAAATTGAAGAAGTTTGGGAGGGCAACTT TGCAGGAGGGGTACGCGGAGCAGCAGTACCAATTGACGAAGAAAAGTGATGAGTTATTAGAGGTGCAGCAGTTAGTGAAG ATGAAGTGTGATGTTCTGCAGATTTGGAAACAGTAAGGTCTTGAAGTTTGGATGTTAAAGCCTTAGCTGCATCTGATCCT TCAAAATGAGCTGGTTTCAGTTTCTCAGCTACGTTTTTTGCCGTTGTCTTGTTTCGATCCGGAAGTGTAGTAGTAGCAGC AGCAGCAGCCTTTGAAGTTGTTGTTTTAGGTTGTGTTGTTCTCATGGACTGGGAATGACCTAGTGACTTTTCTCGATTTT GTTTGTCATAGTTTGACATAACATGCTTCTCAGGGACTGCAGAGGTAGCTCTTGAATGGAGTGTACCATTTTCCTTGTAT CCTGCAGGTGCCTTCTCTGATTCATACACTGAAAACAATAGTTTGACATAACAATGTGAATATAAAAAGAAGGAAGAAAA GAAAAGACAAATCTTTAAGAATGTTTATGGTTTTGTTTCAAATTGCGGTCCGCAACTGCTATTGCGGCCTCAATGTAATG GGTTTTGGAGACACCACATCAACGTCAGGCCACATCAGCCTGCATTTGTCCGCAACTCCACAGCGCAGCAGCAGCTGCGA CAGTAATTTAGAACTTTAAGAGTCTTGTTGGAATGTTTATCATGATTACCTGGGGCTCCACGGTATTCAGCATCTTCTTC TGCACCATCACCTTCTAAGATAGCACCTGATGTGGGGCTATTAGCGTTCCCATCCTCTTGTTTTTTCTTGCTGAGGCTGT GGCGTAGTTTCTTGGCCTTCTCCTTCACTTTGGTGAGGACTGATTTTTTCTGATTCTGGCTATTGTCTTCTTCTGTATCA CGGTGCCTCAACCTGCTGAAGAAAGGGGAGGATGGCGAGGAGGAAATGGCGGAGGAGGAGGGGGAGCAGGTTGGTGACAG CTTAGACTTTGAGTTTGGAGCTGAGTGTGAACCTTCTCCTGCTGTATTGTGAGTCCAAATTGGAACTTAAAATTAGAATG ACAATGCTACTTGATTAAAAAAATATTGATTTGCAAAGGTGAGTATGAAAAAAAAAATGGAAATAATCAATGGTTGG
CDS sequence (LotjaGi3g1v0490300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATCATCAACTACTCTCTTCAATTTCACCCTATCATCTAACTCACTTCTTCACCATCAAAGGACAAAGAGTTC AAAACCTCTTCTCTCTTCCTCTCGCATCATCAACCAACACACTGTTTCTTCCATTAACCACCATTTGGTTCCCACACGCG TCACATATCCACTTCTTCCTTCTTCTTCTGCTCCTAACAGCAGATTCCACGTGAGGTCCCAGAAGCAGAAGGTGTATTCT GCTGGAGGAAAATCGGAGCCGCTTGCTTCTGATGCAAAATACCAAGAGGAATTCTCTTGGTCTTCTGTGATTCTTCCGTT TTTGTTCCCTGCATTAGGTGGCTTGTTATTTGGTTATGATATCGGTGCCACCTCCGGTGCTACAATTTCACTGCAGTCAC CTGAGCTTAGTGGGATAACTTGGTTCAATCTTTCTTCCATTCAGCTTGGACTTGTGGTCAGTGGTTCCCTATATGGGGCT CTTCTTGGCTCAATTCTTGCATTTGCTGTTGCTGATTTCCTTGGGAGGAAACGGCAACTTATTGTTGCAGCCTTGTTGTA TATACTTGGTGGTGCAATCACTGCTGCTGCACCAGAACTTAATGTCCTCTTAGCAGGAAGGCTGCTTTATGGGCTTGGTA TTGGTTTGGCCATGCATGGGGCTCCTTTATATATAGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCACTA AAAGAGCTCTTCATTGTCCTGGGGATTCTGGGGGGCTATTTTGTCGGAAGCTTTCAGATTAGTTCAGTTGGGGGATGGCG ATTCATGTATGGATTTAGTGCTCCAGTTGCCGTGTTAATGGGACTTGGAATGTGGACTCTCCCCGCTTCTCCACGGTGGT TGCTTCTCAAAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCAATTTTTTCCCTGAGCAAATTAAGG GGCCGACCACCCGGTGATAAAGAATCCGAGAGGCAAATAGAAGAGACCCTTGTCTCATTGAAGTCTGCCTATAAAGATCA GGAATCCGAGGGCAATTTCTTAGAGGTTTTTCAGGGTCCTAATCTGAAAGCCTTCATAATTGGTGGGGGGCTAGTCTTAT TTCAACAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCAATTCTCCAGAGTGCTGGATTTTCAGCTGCATCT GATGCTACTAAAGTTTCAGTTGTTATCGGCTTATTCAAGTTACTAATGACATGGGTTGCTGTCCTAAAAGTAGATGATCT TGGGAGAAGACCTCTGCTGATTGCAGGCGTCAGTGGCATAGGTCTCTCTTTAGGTCTCCTGTCTGCTTATTATAAATTTC TTGGAGGATTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCAATAAGC TGGCTTATGGTATCAGAAATCTTCCCAATTCGCACTAGAGGACGGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTC AAATGCTGTCGTCACCTTTGCATTCTCACCATTAAAGGAGCTTCTAGGAGCTGAGAACCTTTTTCTCCTTTTTGGTGCCA TTTCTTTAGTGGCACTTCTGTTCGTTATATTTTCTGTCCCTGAGACTAAAGGCTTGAGCTTAGAAGAAATAGAATCCAAA ATCTTGAAGTGA
Protein sequence (LotjaGi3g1v0490300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSTTLFNFTLSSNSLLHHQRTKSSKPLLSSSRIINQHTVSSINHHLVPTRVTYPLLPSSSAPNSRFHVRSQKQKVYS AGGKSEPLASDAKYQEEFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGITWFNLSSIQLGLVVSGSLYGA LLGSILAFAVADFLGRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSL KELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLKAVQGKGSFQDLKEKAIFSLSKLR GRPPGDKESERQIEETLVSLKSAYKDQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSILQSAGFSAAS DATKVSVVIGLFKLLMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS WLMVSEIFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAISLVALLFVIFSVPETKGLSLEEIESK ILK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 97 | 97 | - | – | |
| PANTHER | 80 | 561 | 482 | 7.5E-206 | – | |
| PANTHER | 80 | 561 | 482 | 7.5E-206 | – | |
| SUPERFAMILY | 97 | 558 | 462 | 2.09E-59 | ||
| Phobius | 98 | 119 | 22 | - | – | |
| Gene3D | 99 | 561 | 463 | 3.4E-108 | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| TIGRFAM | 102 | 557 | 456 | 4.4E-94 | ||
| ProSiteProfiles | 106 | 550 | 445 | 49.362 | ||
| Pfam | 109 | 558 | 450 | 9.6E-92 | ||
| CDD | 109 | 557 | 449 | 0.0 | – | |
| PRINTS | 114 | 124 | 11 | 1.9E-22 | ||
| Phobius | 120 | 138 | 19 | - | – | |
| Phobius | 139 | 168 | 30 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| ProSitePatterns | 167 | 184 | 18 | - | ||
| Phobius | 169 | 179 | 11 | - | – | |
| Phobius | 180 | 198 | 19 | - | – | |
| TMHMM | 180 | 198 | 19 | - | – | |
| Phobius | 199 | 203 | 5 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 204 | 226 | 23 | - | – | |
| PRINTS | 204 | 223 | 20 | 1.9E-22 | ||
| ProSitePatterns | 209 | 234 | 26 | - | ||
| Phobius | 227 | 237 | 11 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| Phobius | 257 | 267 | 11 | - | – | |
| Phobius | 268 | 287 | 20 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 288 | 382 | 95 | - | – | |
| Coils | 330 | 350 | 21 | - | – | |
| PRINTS | 375 | 385 | 11 | 1.9E-22 | ||
| Phobius | 383 | 399 | 17 | - | – | |
| Phobius | 400 | 404 | 5 | - | – | |
| Phobius | 405 | 424 | 20 | - | – | |
| TMHMM | 405 | 422 | 18 | - | – | |
| Phobius | 425 | 430 | 6 | - | – | |
| Phobius | 431 | 451 | 21 | - | – | |
| TMHMM | 432 | 454 | 23 | - | – | |
| Phobius | 452 | 456 | 5 | - | – | |
| Phobius | 457 | 484 | 28 | - | – | |
| TMHMM | 459 | 481 | 23 | - | – | |
| PRINTS | 462 | 483 | 22 | 1.9E-22 | ||
| PRINTS | 485 | 497 | 13 | 1.9E-22 | ||
| Phobius | 485 | 495 | 11 | - | – | |
| TMHMM | 496 | 518 | 23 | - | – | |
| Phobius | 496 | 515 | 20 | - | – | |
| Phobius | 516 | 526 | 11 | - | – | |
| TMHMM | 527 | 546 | 20 | - | – | |
| Phobius | 527 | 546 | 20 | - | – | |
| Phobius | 547 | 563 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0490300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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