Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0493200 |
Transcript ID | LotjaGi3g1v0493200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Extensin-like protein; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|A8MUU9|YV023_HUMAN Putative uncharacterized protein ENSP00000383309; TrEMBL-Plants: tr|Q43682|Q43682_VIGUN Extensin-like protein; Found in the gene: LotjaGi3g1v0493200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91149636..91151735) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAGTCTCCTCCTCCCCCTTCTCCTTCACCACCACCTCCATATGTGTACAAGTCCCCTCCACCACCATCTCCCTC ACCTCCTCCACCTTATGTCTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATATGTGTATAAGTCACCTC CTCCTCCATCTCCTTCACCACCCCCACCATATGTTTATAAGTCTCCACCACCACCATCTCCATCACCACCACCTCCATAT GTTTATAAATCTCCTCCTCCACCATCTCCTTCACCACCTCCTCCATATGTGTATAAGTCACCACCTCCTCCATCACCTTC ACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTC ACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTCCATAT GTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCCCCATC ACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTCTCCAC CACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCACCATAT GTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCACCTTC ACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTCTCCTC CTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTCCATAT GTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCTCCTTC TCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTCCATAT ATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCTCCTTC TCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCACCTTC TCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAAGTCAC CCCCACCTCCTGTGTATTAA
CDS sequence (LotjaGi3g1v0493200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAGTCTCCTCCTTATGTCTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATATGTGTATAAGTC ACCTCCTCCTCCATCTCCTTCACCACCCCCACCATATGTTTATAAGTCTCCACCACCACCATCTCCATCACCACCACCTC CATATGTTTATAAATCTCCTCCTCCACCATCTCCTTCACCACCTCCTCCATATGTGTATAAGTCACCACCTCCTCCATCA CCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCT CCTTCACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTC CATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCC CCATCACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTC TCCACCACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCAC CATATGTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCA CCTTCACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTC TCCTCCTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTC CATATGTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCT CCTTCTCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTC CATATATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCT CCTTCTCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCA CCTTCTCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAA GTCACCCCCACCTCCTGTGTATTAA
Protein sequence (LotjaGi3g1v0493200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNLVWQRQWPQLLCGVALCLMALSVAADYDKPYYAAPPSHEQHPDNHGPNVPPYYYKSPPQPYVYKSPPPPSPSPPPPY VYKSPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYAYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSQPPPYIYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYIYKSPPPPSPSPPPLYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYIYESPPPPS PSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPLPS PSPPPPYIYKSPPPPSPTPPYNPYLYKSPPPPVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
Phobius | 1 | 28 | 28 | - | – | |
SignalP_EUK | 1 | 28 | 28 | - | – | |
Phobius | 1 | 12 | 12 | - | – | |
Phobius | 13 | 24 | 12 | - | – | |
Phobius | 25 | 28 | 4 | - | – | |
Phobius | 29 | 674 | 646 | - | – | |
MobiDBLite | 33 | 58 | 26 | - | – | |
PRINTS | 38 | 54 | 17 | 1.6E-13 | – | |
PRINTS | 60 | 72 | 13 | 1.6E-13 | – | |
PRINTS | 74 | 95 | 22 | 1.6E-13 | – | |
PANTHER | 85 | 181 | 97 | 4.5E-184 | – | |
PANTHER | 85 | 181 | 97 | 4.5E-184 | – | |
MobiDBLite | 91 | 484 | 394 | - | – | |
PRINTS | 95 | 111 | 17 | 1.6E-13 | – | |
PRINTS | 112 | 129 | 18 | 1.6E-13 | – | |
PANTHER | 176 | 293 | 118 | 4.5E-184 | – | |
PANTHER | 176 | 293 | 118 | 4.5E-184 | – | |
PANTHER | 288 | 406 | 119 | 4.5E-184 | – | |
PANTHER | 288 | 406 | 119 | 4.5E-184 | – | |
PANTHER | 400 | 524 | 125 | 4.5E-184 | – | |
PANTHER | 400 | 524 | 125 | 4.5E-184 | – | |
PANTHER | 504 | 592 | 89 | 4.5E-184 | – | |
PANTHER | 504 | 592 | 89 | 4.5E-184 | – | |
MobiDBLite | 509 | 628 | 120 | - | – | |
PANTHER | 560 | 673 | 114 | 4.5E-184 | – | |
PANTHER | 560 | 673 | 114 | 4.5E-184 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0493200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…