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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0493200 |
| Transcript ID | LotjaGi3g1v0493200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Extensin-like protein; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|A8MUU9|YV023_HUMAN Putative uncharacterized protein ENSP00000383309; TrEMBL-Plants: tr|Q43682|Q43682_VIGUN Extensin-like protein; Found in the gene: LotjaGi3g1v0493200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91149636..91151735) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAGTCTCCTCCTCCCCCTTCTCCTTCACCACCACCTCCATATGTGTACAAGTCCCCTCCACCACCATCTCCCTC ACCTCCTCCACCTTATGTCTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATATGTGTATAAGTCACCTC CTCCTCCATCTCCTTCACCACCCCCACCATATGTTTATAAGTCTCCACCACCACCATCTCCATCACCACCACCTCCATAT GTTTATAAATCTCCTCCTCCACCATCTCCTTCACCACCTCCTCCATATGTGTATAAGTCACCACCTCCTCCATCACCTTC ACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTC ACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTCCCCAC CTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTCCATAT GTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCCCCATC ACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTCTCCAC CACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCACCATAT GTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCACCTTC ACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTCTCCTC CTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTCCATAT GTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCTCCTTC TCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTCCATAT ATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCTCCTTC TCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATCTCCAC CCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATAT GTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCACCTTC TCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAAGTCAC CCCCACCTCCTGTGTATTAA
CDS sequence (LotjaGi3g1v0493200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACTTAGTTTGGCAGAGGCAGTGGCCTCAACTCCTCTGTGGAGTAGCATTGTGCCTAATGGCTCTCAGTGTTGC CGCTGATTATGATAAGCCATACTATGCAGCACCACCATCTCATGAGCAACACCCAGATAATCATGGCCCCAATGTCCCTC CATATTACTACAAATCCCCTCCTCAACCTTATGTCTACAAATCACCACCACCTCCATCCCCATCTCCACCACCACCTTAT GTCTACAAGTCTCCTCCTTATGTCTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATATGTGTATAAGTC ACCTCCTCCTCCATCTCCTTCACCACCCCCACCATATGTTTATAAGTCTCCACCACCACCATCTCCATCACCACCACCTC CATATGTTTATAAATCTCCTCCTCCACCATCTCCTTCACCACCTCCTCCATATGTGTATAAGTCACCACCTCCTCCATCA CCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCGCCTTCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAATCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTTTACAAGTCTCCACCACCGCCATCTCCTTCACCACCCCCTCCATATGTGTATAAGTCACCACCTCCTCCTTCT CCTTCACCACCTCCACCATATGTTTACAAGTCACCACCTCCACCATCCCCATCACCACCCCCTCCATATGTTTACAAGTC CCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTTTACAAGTCTCCACCACCACCATCTCCTTCACCACCCCCTC CATATGTGTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGTATACAAGTCACCACCTCCACCATCC CCATCACCACCCCCTCCATATGTTTACAAATCCCCACCTCCTCCTTCTCCTTCACCACCTCCACCATATGCTTACAAGTC TCCACCACCACCATCTCCTTCACCACCCCCTCCATATGTTTACAAATCTCCACCTCCTCCATCACCCTCCCCTCCCCCAC CATATGTTTATAAGTCTCCACCCCCGCCGTCACCTTCACCTCCTCCACCATATGTCTATAAGTCTCCACCCCCACCCTCA CCTTCACCACCCCCACCCTATGTTTACAAGTCACCACCACCACCATCACCTTCACAACCACCTCCATACATTTATAAGTC TCCTCCTCCACCATCTCCTTCACCCCCTCCTCCATACATCTACAAGTCACCACCACCACCATCCCCTTCACCACCACCTC CATATGTCTACAAGTCCCCACCCCCACCATCTCCCTCTCCACCACCTCCATATGTTTATAAATCTCCACCTCCACCATCT CCTTCTCCTCCTCCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCCCCACCACCTCTGTATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCTCCTCCACCTTATGTCTATAAGTCACCACCTCCACCATCCCCTTCACCACCGCCTC CATATATCTACAAGTCCCCACCCCCACCATCTCCCTCCCCACCACCTCCATATATTTATGAATCTCCACCTCCACCGTCT CCTTCTCCTCCACCACCATACATTTACAAGTCCCCACCACCTCCTTCTCCATCTCCACCACCTCCATATGTCTACAAATC TCCACCCCCACCATCTCCCTCACCACCTCCACCCTATGTCTATAAGTCACCACCTCCTCCTTCTCCTTCACCACCTCCAC CATATGTATACAAATCTCCACCACCACCTTCTCCGTCACCTCCTCCACCTTATGTCTATAAATCACCACCACTTCCTTCA CCTTCTCCTCCTCCTCCTTATATATACAAGTCCCCACCTCCACCATCTCCAACCCCTCCTTATAACCCCTACCTCTATAA GTCACCCCCACCTCCTGTGTATTAA
Protein sequence (LotjaGi3g1v0493200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNLVWQRQWPQLLCGVALCLMALSVAADYDKPYYAAPPSHEQHPDNHGPNVPPYYYKSPPQPYVYKSPPPPSPSPPPPY VYKSPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSPPPPYAYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYVYKSPPPPSPSQPPPYIYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPS PSPPPPYIYKSPPPPSPSPPPLYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSPSPPPPYIYESPPPPS PSPPPPYIYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYVYKSPPLPS PSPPPPYIYKSPPPPSPTPPYNPYLYKSPPPPVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 674 | 646 | - | – | |
| MobiDBLite | 33 | 58 | 26 | - | – | |
| PRINTS | 38 | 54 | 17 | 1.6E-13 | – | |
| PRINTS | 60 | 72 | 13 | 1.6E-13 | – | |
| PRINTS | 74 | 95 | 22 | 1.6E-13 | – | |
| PANTHER | 85 | 181 | 97 | 4.5E-184 | – | |
| PANTHER | 85 | 181 | 97 | 4.5E-184 | – | |
| MobiDBLite | 91 | 484 | 394 | - | – | |
| PRINTS | 95 | 111 | 17 | 1.6E-13 | – | |
| PRINTS | 112 | 129 | 18 | 1.6E-13 | – | |
| PANTHER | 176 | 293 | 118 | 4.5E-184 | – | |
| PANTHER | 176 | 293 | 118 | 4.5E-184 | – | |
| PANTHER | 288 | 406 | 119 | 4.5E-184 | – | |
| PANTHER | 288 | 406 | 119 | 4.5E-184 | – | |
| PANTHER | 400 | 524 | 125 | 4.5E-184 | – | |
| PANTHER | 400 | 524 | 125 | 4.5E-184 | – | |
| PANTHER | 504 | 592 | 89 | 4.5E-184 | – | |
| PANTHER | 504 | 592 | 89 | 4.5E-184 | – | |
| MobiDBLite | 509 | 628 | 120 | - | – | |
| PANTHER | 560 | 673 | 114 | 4.5E-184 | – | |
| PANTHER | 560 | 673 | 114 | 4.5E-184 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0493200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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