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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0501600 |
Transcript ID | LotjaGi3g1v0501600.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chitinase; TAIR: AT3G54420.1 homolog of carrot EP3-3 chitinase; Swiss-Prot: sp|P27054|CHI4_PHAVU Endochitinase PR4; TrEMBL-Plants: tr|I3SA35|I3SA35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0501600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92003563..92004496) extracted from Lotus japonicus Gifu genome v1.2.
CTGAACATTCATGCTCCACGATTTGCGGTAGCCTTTGTCATGATGATGATGATGGTTCCCAAATTTGTGAGAGCCCAAAG TTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGGCATAATTGATCAGGCTGATGCTAGTTGTGCAGGGAAGAATT TCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAATTCGGTAGCCTTGACTCTTTGGATGATTCTAAG CGTGAGATTGCAGCTGCTTTTGCCCACTTCACCCATGAAACAGGACGTTAGTATTCCTTCTATTTCTCTTCTAAATATAT ACTAACACTTGAACTATATCTTCTCGAGTGACATAACCCCTGCAGAGAAATCTTGGTCATACAAAATATTTTTCTTAACA TCTTTTACACGCACAAATATTTACCCAATAGTCATGAATTTGTAAACTACCATGATTTTTTTTTTGGGCTTATACTATGA TTAATGAATGATTAATTGATACAATACACATTGCCACATGGATGCAGATTTTTGCTACATAGAAGAGATTGATGGCGCAT CAAAGGACTATTGTGACGAAACCAACACTGAATACCCTTGTGCACCTAACAAAGGCTATTATGGGCGTGGACCAATCCAA CTATCATGGAACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTTCGATGGATTGAATGCTCCAGAGACAGTGGCCAA TGACCCTGTTGTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAATTTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTG CAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCGAACTCCAACACAGTTCAAGCTCGAGTTAATTACTAT ACCCAATATTGTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTACTTGCTAA
CDS sequence (LotjaGi3g1v0501600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGATGATGGTTCCCAAATTTGTGAGAGCCCAAAGTTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGG CATAATTGATCAGGCTGATGCTAGTTGTGCAGGGAAGAATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCT ACAACCAATTCGGTAGCCTTGACTCTTTGGATGATTCTAAGCATTTTTGCTACATAGAAGAGATTGATGGCGCATCAAAG GACTATTGTGACGAAACCAACACTGAATACCCTTGTGCACCTAACAAAGGCTATTATGGGCGTGGACCAATCCAACTATC ATGGAACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTTCGATGGATTGAATGCTCCAGAGACAGTGGCCAATGACC CTGTTGTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAATTTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTGCAACC ATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCGAACTCCAACACAGTTCAAGCTCGAGTTAATTACTATACCCA ATATTGTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTACTTGCTAA
Protein sequence (LotjaGi3g1v0501600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMMMVPKFVRAQSSVADIVTPEFFNGIIDQADASCAGKNFYSRDAFLNALNSYNQFGSLDSLDDSKHFCYIEEIDGASK DYCDETNTEYPCAPNKGYYGRGPIQLSWNFNYGPAGKSNDFDGLNAPETVANDPVVSFKTALWYWMQFVRPVLSQGFGAT IRAINGQLECDGANSNTVQARVNYYTQYCSQLGVAPGDNLTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
PIRSF | 3 | 68 | 66 | 9.4E-13 | ||
PANTHER | 8 | 202 | 195 | 1.3E-103 | – | |
PANTHER | 8 | 202 | 195 | 1.3E-103 | – | |
Gene3D | 14 | 73 | 60 | 1.8E-10 | – | |
SUPERFAMILY | 15 | 202 | 188 | 1.83E-64 | ||
Pfam | 19 | 60 | 42 | 4.2E-5 | ||
CDD | 20 | 202 | 183 | 1.58301E-70 | – | |
ProSitePatterns | 36 | 58 | 23 | - | ||
PIRSF | 58 | 202 | 145 | 4.0E-59 | ||
Pfam | 68 | 147 | 80 | 3.6E-27 | ||
Gene3D | 74 | 127 | 54 | 1.0E-26 | – | |
Gene3D | 128 | 202 | 75 | 5.1E-25 | – | |
ProSitePatterns | 136 | 146 | 11 | - | ||
Pfam | 155 | 202 | 48 | 4.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi3g1v0501600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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