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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0503900 |
| Transcript ID | LotjaGi3g1v0503900.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT1G49405.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q10EJ2|CSPLU_ORYSJ CASP-like protein 5C1; TrEMBL-Plants: tr|A0A067EJK8|A0A067EJK8_CITSI CASP-like protein; Found in the gene: LotjaGi3g1v0503900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92209066..92215013) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTTATGGTCTTTGTGTTTGCACTTGGCAAATAAAAGCAAGTTTTGGTGTGTCTTATTTTCTTCGTTGGAATTCAAAA ACCCTAACCAGAAGCGATTCAGAGAGAGAGAGAGAGGAAACTAGGGTTTAAGATCGGAGAAGAAGGAAGAAGCCAACAAT GTTTCCAGGAATGTTCATGCGCAAACCAGACAAGGCTGCAGCACTGAAGCAGCTGAAATCTCATGTCGCCATGTTCGGGA CATGGGTTGTTCTTATTCGAGTCACCCCTTACGTTCTTCACTTTCTCACCAGCGAGAAAGAGGAACTCAAACTCGAGCTT TAGTTTCATTTCTCACATGGTAATGTAATTCATCATCATTCTTCGATTTCTTCTTAGTCAGTGCTTTTTTTTTTATCTAT TAACTTGCATCTCATTAGGTTTGGAACTTTTGTGTTTATGATCCGAATGGGTTGATTTTTTGTTGGATTAATTGGAATGT TATGTGAAGAATTTCTAATTGGTAGTGTTTTGATTTGTATACTACGACCCGGTGGGTTTCGATTGTGCTTAGTTATCATG GTATTGTTAGCTTAGAAGATAGGTGGTGAAAATTCACATTTTAGCTAGAATACAACACTTGTTGATTTGATTGGATTTCA ATGATGATTGGACTCACTTCGTTGAGGTTGTCGTCTTTATCAAAGCAATGCAGTCTGTTCATGGGATGATTTAGACATCG AATTTATTTTTGCCTTAGTCTTAGTTGAGGTGAAATCTGTCATCAAAACAGGGAAAATATAATAGCTTAACTTTTCTGTT GTTGACCACTAAACTCACTTGATTATTCCATACAAGTTTTTTCCCATAATGTATGTTGTATGTAGCTTCATCTGTCATAT AAGTTTTGAAGTTCGAATCTACTACCCTATTTGAAGTGAACCGAAAAAGAAAGCTAGTTATTCTAAGACGCAAAAATGTA TCGATGTATGGTGACTATTTATATCCTGAAAATTCCGCTGTCTCCAATTATTGTTGCTGTTTGTGTGAGAGCTCAAGAAT ATTGTATGGTTAAGCTGTACTTGCCCTCATAACAATTGTGTTGCTCCTTTTTTTGCTGGAGAGTTATAGGCGGTCTAGGT GACATGAACTGTAAACTGCATGATTAATAATTTAACTTTCATTTCAAGATAAGTTTCTTAATCGTATGCCTGCATGCATG ATATGTGCATTGTCAATCTAATGAAAACCATGTTTGGGATCTAACTTAAATAAATTGAGATTCAAATGATAAATTAATAT TGGTTTATTGGCAGCCTGTGGGATCATATGATGAAATGAACTGGAGGAGTTTACTTCAATCTCTCCTGACTGTTACAGTT AACTCTGTTTTTCAATACATAAGAAAACCAATAGAGTTGAAAACTACATATTGGTTGGAGTAGGGAAGAATGTCCCTTTA CATTTTGTTTATATGCTTACTTTTACTTTAGCCATCGATATGACTTCTTAAATTAACTCTCATAAGTCATAACATAAGTT GAAAGTGAAGCATTTTATTTTGTCTGTGCATGAGATTAGGAGACGCCATCAGACACTGGGAGTTTGAAGGCTGGTAGCGT CCCTGTGTTATGTTTGTCTTGTTTGCTGAAAATCAACTTGTAGTCATGTACTGATTAAGTATCAAATTCATAATGTATTG TATTTTCTGTCCCAATTAGCTTTTGGGTTTTGTTTATCCATAGTTTATGTTGTTTATCTGTAATTTCCTTGTTAATTATG AAGTTTTTCTTACCTGTGGCTGTCACAAACGTAATAGAATCTGTGTTCTTTTGTGTTGTCAATTCTAGGAAGATATTGGT GAATGAGTATTTAACAGTTCTTTATTAAATGTTGCTTGTGATTATGTTTAACATAAGTTGGCAGATGGATGTCATCATTT TTAGCTCTCTACTGCATTATGTTTTTCCTACTTCTCAGTTATGCTACCTTGTGTCAATTTTGTTCTTTCATAGTGTCTTA TAGTCTTACTTTCTTTCTTTTTTTTTCAACCAATGCAGTGGGTCTCGAGGAGGAGGATATGTGGTTGGGCCAGAAGGATT GTTTTTTGAGTCATGTTTGTATGCAACCCTTAAAATTTAAGGCCATATTGTTAGTTTAATGATATCTCATATTACAGCAA TAAGCTTGTGAAGAGTTTTTCAAAATATGAATTTAATGTATGTCAATGTTTGGGTTGATTTCGTATTTCAAATAGTTCAT GGAATTTCTTTTCTTTTTGTTTGGTGGTAATGGTGCTGCAAGACAGTAAAAGGAATGTAGGAGGTTATGAGATTCTTTTT GGTCATAGATATCTTGAAGTTGATTTTCGGAGATGGTGAAGTAAAAATAAACGAGCCCAAAACATAGCTTAAAGAACTCA TGTAAAGATGATTGCAGTTTTATAGGTTTGTTCATGACTTAGAGTAAAGATTCACAAGGAAAGCATGTACACTGAGCTCA TGCCTTCGAGTTCTTTAACTACCATTTGTGTAGCTTCTTCATCATCTCCTTCACGAGAGCAATCTCTGGCCCGCTGCGAT GACCGATTTCCCTTGCAGGTGATGGTGTAGCCCCTCCTTCCCTAATTGTGTACATCTCCCTATGTGAATTCACCGTTTGG GGGCATTGCATGCGACAACGTTAAGTGGAGATCATTAGAATTTGATATTAATGTCATGGAAAATATAATACAGATGTTCT ATTACTCCTGGCCAACAGGAAAAACTGTACATAAGGTACTGCTTCTATGTTTTATCCTATTAATTTATATCTGTATTATG GTCGTTTTAGTCACTTGGGAGGCGTTTGTTTCAAGATTTGGAAAGAGATTCCCGGGAATATGAAGGTTGGGAATGAACAT TCCTGCGTTTGTTACAAGATTGGAAACTATGATTCCTGGGTATCAATCATTCCCTGGAATAAAATAACTTCCACAATTCC ATGATTTCCTTCATATTGATTCCCATGAAAAAGGTTGGGAATCTTACATTCCCATGGGAAAGATGAATGTAACTTCCCAC TTCTCCCACTATTTTTATCATTTTTACCTTTATTTTTAAGTTTTTTTAATTTTTAAATTAAGAAAATTTTAAAATGTTCC CAGGAATACAAAATACTTACCAAACACATTTATAAAATTTACCCAGAAATAACATACCCGGTAATCATATTCCTCCGGGA ATGTGATCTCAAACCTTGAAACAAACGCCCCCTTGGTACTGGTTTACACTAACAGTCGACCGTCGACACCATTCTAGGTT CTCCATTACCATTTGTTTAACATGATACATCACTTTCCAATGAAAATGGGGTCAATACGGTTGTGACAAGTGGCCAATCC AAGTTCCCTCTTTAGAAAAAGCACTGGTGGTGTATAATATGCTTCTAGTCATTCAATTCCTGAATTCATTTTAGACAGAT GCTATCATGTCCTGTCCCTAGCATGAATAACGACCGTTCAAATCCATACAAGAAATATATAAAAAAACAAACGAACGAAG AAATAAATAAGAAACAAAAAGAGGATCAAATCTAGCAAAAGAACCGATATTTTATCATACTTTTTGAGCTTTGAATATAT CTCATCTCAAAATATTTTAATCTTCTCTGCATACCAAAAGGCCTATTTGCACCTTGAGTAGAGAAGGCAAAAACGTTTCT GCTATTAACAGAAAAAATTTAGAGGACTTCACCCTATACTATTTATGCCTAGAAAGTTTATCTATTTAGCGGCGTGATTA CTTGCCACCGAAAACTAAGTAGCCCCATGTGTCAACTCCATCTTCAAAACTAAAACAACTACGCCATTGCTCAATCATTC AGACCACAAAAGCCTTTGTACTATCTCCAAATTCCACCTAACAATAATTTTCTGGAAACCTATCATGAAGCTTCTGTTTG ATAGAGAAATGCCTTCATTGTCATAAAGTGCAACCAAGCAAGCTCCTTACATAGAGGAATTTTCTTCTTCTATTCATTAG CTTAGCTTGTTTGACACTTGGCACCAGGGGAAAAAGGGTAAGGAATTTAGCATGAATCTTGGGACTTGATATCATATATA TAGATCATGTTTTTAAACTTTTACATGAAAAGATTCAGGCTTGAAAGAGAATTATGATAGCAGCATATCACAAGGGAAGA GCAAAATCCAAAAGTAGAATTGGTATAGTACCCTGTAAACCCCATACAACAATTTCATGGATGAATTTCCTGGCTCAGTA GGCACCAGCGCCAGCTTGAGCCTGAGATTAGGCCAGACCATATGCTCATCTGCCTCACTTCTTTTCATGTCTTTGGGAGT TGAATTCTACAGCTACACATCCTTCTGGTATTTTCTTTTTCCTCATCTTCCCCTTTGTAATTCTAATCTTATGAAATTAA CATGTGTTGGTTTGGTTTTTCTGGCTTGATCTTCTAAGATTACTTCTCCATAAGATTCTGCTATGTCTCTAATGCACTTT TTTTAATATATAAGCTACTCATAAATCATCTAACCTGTAGTTCATTCAGCTGATCATACGTCTTATTCTATAGCATAGTA AAAAGAATATTTAATTTTACGCCGGAGATGATAGAAGCTGATCAAACATCAATTTAAGTGAATTTGTTGATTCTTCTGTT AATTAACTGATTGATTTTTGTGCTCATTATCCATGTCAAGCTTTCTGGTAACAATTATGGGTTTGGTAATACCTTGGAGT TTCACGTTAGCAGTGGTTGATGGGTACTCAACTCTGGTAAAATGCCCCGTTCGTCAACCAGGAATACTGTTGATTATCAT TGTGGGAGACTGGGTATGTAATTTCTCTGCACGGTGCTATTATTTGACTTGTAGCATGTTTGGATCAGTTTTTTTTCCTC AGAATCAATTTTGGAATCTGGAAGCTATACACAGTTCCCTCAGAATCAATTTTGGAATCTAAAAGCTACTCACACAAATT TCTTTCTAGAATTGGTTAAGGATTTCCAAACATGCACAATACTGGCAACCATGTATTAGTAACTCTTAAGTTTATTTGTT ACACAGGTGTTATCAACCCTAACATTAGCAGCAGCTTCCTCAACAGCAAGTGTGGTAGATCTCCTGCTGAACTCCGACGG GTCTTTTTGTCCTATAAAGTTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCCTTCCTGACATGGTCTCTATCTTTGG CATCCTCTCTTTTTAACCTTTGGCTATTACCCTCTTTGTGATTCTCATTTGATTCCCCTGTGAAAATATTAGATTAACCA TTGTTTATTTGTAATTTTCTTTTCGATTTAGCATGATATACCATAGGGAACATTTTTTGTGAATGATGTATGATTACAGA ACTCATAACATGTAAATGAGAAAGTTTAGAGTACAGAGATGCTCAATGTTATACTGCACACAAGAGCACAAGGATGTCAA CTTAAGAAGACACTTCTATGTCCAATACTTATACTGTGGTCCATGGACAATAGAATTAGAAGAGGGGGTGGGAAGAGAGT CTCTTCAAGCGACAGTTACTCAAGGAGTCTAGTGAATATCATTGTTGTGTTTCATGAAGAAGATCACTGTCTGCAGTTCT GCAGTTTGCTAATCTTTTCACCTTGGAAGGTTTAGGCTCCAATCATGTCTTTCACCATTACCTACTGGCTCCTGACACCA AGTCAACAAGTGGTCAATTTGCAGGGAAGTCACATGTATATACGAAATCAACAACAAATCAAGCAGTATTACATTTTGAT CACTAAACCGGCCTCAGATGTAAAAGGGACTTCCTTTCTTTTTTGCGATTGAAAAAAGCACCATAGAACCCTCCCAGATG GAATATATCATTTGGAAATGTATTCCTTTCATTAGTATTCATAAATCAACTTTGTTTGCCTAAACTAGTTGGTAGGTGTT GTAAAAGAAGATGATTAACAGCGCAAAC
CDS sequence (LotjaGi3g1v0503900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAATTTCCTGGCTCAGTAGGCACCAGCGCCAGCTTGAGCCTGAGATTAGGCCAGACCATATGCTCATCTGCCTC ACTTCTTTTCATGTCTTTGGGAGTTGAATTCTACAGCTACACATCCTTCTGCTTTCTGGTAACAATTATGGGTTTGGTAA TACCTTGGAGTTTCACGTTAGCAGTGGTTGATGGGTACTCAACTCTGGTAAAATGCCCCGTTCGTCAACCAGGAATACTG TTGATTATCATTGTGGGAGACTGGGTATGTAATTTCTCTGCACGGTGCTATTATTTGACTTGTAGCATGTTTGGATCAGT TTTTTTTCCTCAGAATCAATTTTGGAATCTGGAAGCTATACACAGTTCCCTCAGAATCAATTTTGGAATCTAA
Protein sequence (LotjaGi3g1v0503900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEFPGSVGTSASLSLRLGQTICSSASLLFMSLGVEFYSYTSFCFLVTIMGLVIPWSFTLAVVDGYSTLVKCPVRQPGIL LIIIVGDWVCNFSARCYYLTCSMFGSVFFPQNQFWNLEAIHSSLRINFGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 95 | 95 | 9.2E-53 | – | |
| PANTHER | 1 | 95 | 95 | 9.2E-53 | – | |
| Pfam | 8 | 90 | 83 | 1.3E-12 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 37 | 58 | 22 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 59 | 77 | 19 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 78 | 98 | 21 | - | – | |
| Phobius | 99 | 130 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0503900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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