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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0511100 |
| Transcript ID | LotjaGi3g1v0511100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec14p-like phosphatidylinositol transfer family protein; TAIR: AT2G21520.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|F4IHJ0|SFH8_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH8; TrEMBL-Plants: tr|B0BLI9|B0BLI9_LOTJA CM0216.430.nc protein; Found in the gene: LotjaGi3g1v0511100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92825773..92828130) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGGCCCGCTCGACCGTTTCGCCAGACCTTGTATGAATGTTCCTTCTCTTTCTCTTTTGATCTCATTCTGGTTTTG TTTGTGTTGTGTTTGACTGTTTCTGTTTTTCTTGTGTGTGTGTGTGGTTTGTTTATTTTTCATGTTTTGGTTTTGATAGG CTTTGAGGGATTCTACGGTAGTGATGAGAGAAAAGAGAGGAAGTCTGATTTTGAGAACTCTGAGGATGAAAGGAGGACCA GAATTGGATCTCTCAAGAAGAAGGCCCTCAATGCATCTTCCAAGTTCAAGCACTCTTTGAAGAAAAAGAGCAGCAGGAGG AAAAGTGACGGGCGGGTTAGCTCTGTTTCCATTGAGGATGTTCGGGATGTTGAGGAGTTGCAGGCTGTTGATGCCTTTCG CCAATCGTTGATTATCGATGAATTGCTTCCGGAAAGACATGATGATTACCACATCATGTTAAGGTGCCCTACATTGGTCT TGAGTTGAATTTATTTATTTGATTGCCCTGCCCTTGTTGAGTTCAATGATCTTATACTGTAGTACTTTCTTAATTTATAT ATTTCTCAGATTTCTGAAAGCAAGGAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGGCCGATATGCTACGATGGAGGA AGGAGTTTGGCGCCGACACTATTATGGAGGTAACTGCAGATACAACTTGGATTGTTGCTTTAGCTTCTGCAGATTTAAAT TTAATAGAACTTGGATTGTTGCTTCATCTTGGCTTAATATTTCATGTTTGTTTCAGGATTTTGAGTTCAAAGAATTAAGC GAAGTTGTAAAATACTATCCACATGGCCATCATGGTGTTGATAAGGAAGGAAGACCTGTTTACATTGAAAGGCTTGGAAA AGTGGATGCAAACAAACTTATGGAAGCCACTACTATGGATAGATATGTAAAGTACCACGTACAAGAGTTTGAGAAATCTT TTGCGATAAAGTTTCCTGCCTGCACAATTGCTGCCAAAAGGCACATAGAATCGAGCACTACGATCTTAGATGTTCAAGGC GTGGTATGTTGCCATTAGTTCTTCCTCATTGCATTTTACCTACGAATCTCTATAACATGCAAAAAAACTTATGTTATAGT GTCACTTCTAGGGCCTTAAGAACTTTTCAAAGTCTGCCCGGGAACTCATGATGCGATTACAAAAAATTGATGGCGACAAT TACCCTGAGGCGAGCAATCTCAATTCCTCTCTTATTTTCTTATGTTCCTTATTTTGCTTATTGGAAATTTTGAAGATAAA CATGTACTAAGGTCCCCAATTCTTTTATTGATGATACAGACTCTCTGCCAAATGTTTATCATAAATGCTGGCCATGGGTT TAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCTAAAACAACTTCAAAGATTCATGTATGTAAACGTGATATTT TCTAGCTGTCTAAGGCTCTTTTCTTGATGGTTTAAGGCTGCTGACATTGTTTGATGTCTCTTTGGAAACATCACTTAGGT TCTTGGAAACAAGTACCAAAGCAAACTGCTCGAAATAATCGATTCCAGGTACTTTATCGACATATATCTTAAATGTTTCT ATTTCCCTGTATGTTTTCCATTTTCTGAGTATTTTTTTCCTATTGACGAATGTACTGTACTTTTAAAGCATCACTACCAA TTTGCATTATCCAAAGGCTTAATATTTTTTTTTGGTGAACTTAAATGAAGTGAGTTGCCAGAGTTTCTTGGAGGAACCTG TACCTGTGCAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAAAAACCCTGAAATCTTGAAGGTAGTATGCT GGCCTTGCTTGGCTGCTAATAAGTTCATCACGTGTTCTTCTATGTCAATCTTGTTATATGCTAACTGTTAATTACATGTT GACATTTTGCAGATAATTCTCAGTGGTGAAGCAAGGCGGGCAAGGCAGGTAGTAAAAGTTCTAAACAGTGAAGGAAAGGT TATTGCATATGCAAAACCGCGTTGCCCAATGGTAATTTGTTGTATGATATATTATTGCCTGGACTGAGTGGAGCCTAGTT TTTTTTCCCTGAAGAAGCAGTGGAGCCTGATTTGATTCCTTTGTACTCTTTAGTGTCCTTTTCATCGTGTAACTTGATTG ACCATGACACTTCTTTCTTGCAGATAAAAGGCAGTGATACATCAACAGCTGAATCAGGGTCTGAAACTGAAGATATAGCT TCTCCGAAAACAATGAAGAGTTACTCGCACCTTAGGTTGACCCCTGTTCGTGAGGAAGTAAGCGATGTCCTTGTGATCTG TTCTCATGTTTCTATTAAATAGCGGAGGTTTCAGTTGA
CDS sequence (LotjaGi3g1v0511100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGGCCCGCTCGACCGTTTCGCCAGACCTTGCTTTGAGGGATTCTACGGTAGTGATGAGAGAAAAGAGAGGAAGTC TGATTTTGAGAACTCTGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAGAAGAAGGCCCTCAATGCATCTTCCAAGT TCAAGCACTCTTTGAAGAAAAAGAGCAGCAGGAGGAAAAGTGACGGGCGGGTTAGCTCTGTTTCCATTGAGGATGTTCGG GATGTTGAGGAGTTGCAGGCTGTTGATGCCTTTCGCCAATCGTTGATTATCGATGAATTGCTTCCGGAAAGACATGATGA TTACCACATCATGTTAAGATTTCTGAAAGCAAGGAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGGCCGATATGCTAC GATGGAGGAAGGAGTTTGGCGCCGACACTATTATGGAGGATTTTGAGTTCAAAGAATTAAGCGAAGTTGTAAAATACTAT CCACATGGCCATCATGGTGTTGATAAGGAAGGAAGACCTGTTTACATTGAAAGGCTTGGAAAAGTGGATGCAAACAAACT TATGGAAGCCACTACTATGGATAGATATGTAAAGTACCACGTACAAGAGTTTGAGAAATCTTTTGCGATAAAGTTTCCTG CCTGCACAATTGCTGCCAAAAGGCACATAGAATCGAGCACTACGATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTT TCAAAGTCTGCCCGGGAACTCATGATGCGATTACAAAAAATTGATGGCGACAATTACCCTGAGACTCTCTGCCAAATGTT TATCATAAATGCTGGCCATGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCTAAAACAACTTCAAAGA TTCATGTTCTTGGAAACAAGTACCAAAGCAAACTGCTCGAAATAATCGATTCCAGTGAGTTGCCAGAGTTTCTTGGAGGA ACCTGTACCTGTGCAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAAAAACCCTGAAATCTTGAAGATAAT TCTCAGTGGTGAAGCAAGGCGGGCAAGGCAGGTAGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCAAAAC CGCGTTGCCCAATGATAAAAGGCAGTGATACATCAACAGCTGAATCAGGGTCTGAAACTGAAGATATAGCTTCTCCGAAA ACAATGAAGAGTTACTCGCACCTTAGGTTGACCCCTGTTCGTGAGGAAGTAAGCGATGTCCTTGTGATCTGTTCTCATGT TTCTATTAAATAG
Protein sequence (LotjaGi3g1v0511100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGPLDRFARPCFEGFYGSDERKERKSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVR DVEELQAVDAFRQSLIIDELLPERHDDYHIMLRFLKARKFDVEKAKHMWADMLRWRKEFGADTIMEDFEFKELSEVVKYY PHGHHGVDKEGRPVYIERLGKVDANKLMEATTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIESSTTILDVQGVGLKNF SKSARELMMRLQKIDGDNYPETLCQMFIINAGHGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDSSELPEFLGG TCTCADQGGCLRSDKGPWKNPEILKIILSGEARRARQVVKVLNSEGKVIAYAKPRCPMIKGSDTSTAESGSETEDIASPK TMKSYSHLRLTPVREEVSDVLVICSHVSIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 1.8E-266 | – | |
| PANTHER | 1 | 420 | 420 | 1.8E-266 | – | |
| MobiDBLite | 20 | 70 | 51 | - | – | |
| MobiDBLite | 20 | 42 | 23 | - | – | |
| MobiDBLite | 49 | 66 | 18 | - | – | |
| Gene3D | 76 | 139 | 64 | 1.7E-16 | – | |
| SUPERFAMILY | 82 | 148 | 67 | 4.19E-18 | ||
| Pfam | 103 | 131 | 29 | 6.2E-8 | ||
| SMART | 107 | 132 | 26 | 1.3E-8 | ||
| PRINTS | 110 | 132 | 23 | 9.3E-7 | – | |
| Gene3D | 140 | 360 | 221 | 8.7E-77 | ||
| CDD | 150 | 321 | 172 | 2.61392E-43 | ||
| SMART | 152 | 323 | 172 | 6.1E-58 | ||
| ProSiteProfiles | 152 | 326 | 175 | 26.527 | ||
| SUPERFAMILY | 152 | 345 | 194 | 4.05E-60 | ||
| Pfam | 156 | 321 | 166 | 3.1E-33 | ||
| PRINTS | 279 | 298 | 20 | 9.3E-7 | – | |
| PRINTS | 312 | 321 | 10 | 9.3E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0511100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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