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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0511100 |
| Transcript ID | LotjaGi3g1v0511100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec14p-like phosphatidylinositol transfer family protein; TAIR: AT4G39170.1 Sec14p-like phosphatidylinositol transfer family protein; Swiss-Prot: sp|F4JVA6|SFH6_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH6; TrEMBL-Plants: tr|B0BLI9|B0BLI9_LOTJA CM0216.430.nc protein; Found in the gene: LotjaGi3g1v0511100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92822912..92828549) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCACTAATGCTACTAAATTCTTTACTATATTTTCGGATAAAACGTTTTTCAACGGAATCTAACGCCGGCGCCTCCAT CCTCATTTCCACCGCCATGTGTCAGTCACACCCCTCTACCTCTTCCTATCTTTAACCGGCAATTAAAACCATGTGATTAA TGATAACATTAATTTGGATGATTAGTGTCTTTAACACTGTGATTTAATGTAGGTTGAGTCTCAGCAGGTAATAGCAGAGT GCAGAGAGCAGAGCAGTGACATTCCAATTCCAATTCCAATTCTTCTCGTGATTCCCGAACATTCTCTTCATTATTCCACG CGCCACTCTCACACGTTCCACGCGCCTCCTCCTCAATTCTTCCTAGGGTTTTCCCAACTGTGAATGTACCTTTGCTCCGA CATTCACCACCGTTGCACAATGTCCGGCCCGCTCGACCGTTTCGCCAGACCTTGTATGAATGTTCCTTCTCTTTCTCTTT TGATCTCATTCTGGTTTTGTTTGTGTTGTGTTTGACTGTTTCTGTTTTTCTTGTGTGTGTGTGTGGTTTGTTTATTTTTC ATGTTTTGGTTTTGATAGGCTTTGAGGGATTCTACGGTAGTGATGAGAGAAAAGAGAGGAAGTCTGATTTTGAGAACTCT GAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAGAAGAAGGCCCTCAATGCATCTTCCAAGTTCAAGCACTCTTTGAA GAAAAAGAGCAGCAGGAGGAAAAGTGACGGGCGGGTTAGCTCTGTTTCCATTGAGGATGTTCGGGATGTTGAGGAGTTGC AGGCTGTTGATGCCTTTCGCCAATCGTTGATTATCGATGAATTGCTTCCGGAAAGACATGATGATTACCACATCATGTTA AGGTGCCCTACATTGGTCTTGAGTTGAATTTATTTATTTGATTGCCCTGCCCTTGTTGAGTTCAATGATCTTATACTGTA GTACTTTCTTAATTTATATATTTCTCAGATTTCTGAAAGCAAGGAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGGCC GATATGCTACGATGGAGGAAGGAGTTTGGCGCCGACACTATTATGGAGGTAACTGCAGATACAACTTGGATTGTTGCTTT AGCTTCTGCAGATTTAAATTTAATAGAACTTGGATTGTTGCTTCATCTTGGCTTAATATTTCATGTTTGTTTCAGGATTT TGAGTTCAAAGAATTAAGCGAAGTTGTAAAATACTATCCACATGGCCATCATGGTGTTGATAAGGAAGGAAGACCTGTTT ACATTGAAAGGCTTGGAAAAGTGGATGCAAACAAACTTATGGAAGCCACTACTATGGATAGATATGTAAAGTACCACGTA CAAGAGTTTGAGAAATCTTTTGCGATAAAGTTTCCTGCCTGCACAATTGCTGCCAAAAGGCACATAGAATCGAGCACTAC GATCTTAGATGTTCAAGGCGTGGTATGTTGCCATTAGTTCTTCCTCATTGCATTTTACCTACGAATCTCTATAACATGCA AAAAAACTTATGTTATAGTGTCACTTCTAGGGCCTTAAGAACTTTTCAAAGTCTGCCCGGGAACTCATGATGCGATTACA AAAAATTGATGGCGACAATTACCCTGAGGCGAGCAATCTCAATTCCTCTCTTATTTTCTTATGTTCCTTATTTTGCTTAT TGGAAATTTTGAAGATAAACATGTACTAAGGTCCCCAATTCTTTTATTGATGATACAGACTCTCTGCCAAATGTTTATCA TAAATGCTGGCCATGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCTAAAACAACTTCAAAGATTCAT GTATGTAAACGTGATATTTTCTAGCTGTCTAAGGCTCTTTTCTTGATGGTTTAAGGCTGCTGACATTGTTTGATGTCTCT TTGGAAACATCACTTAGGTTCTTGGAAACAAGTACCAAAGCAAACTGCTCGAAATAATCGATTCCAGGTACTTTATCGAC ATATATCTTAAATGTTTCTATTTCCCTGTATGTTTTCCATTTTCTGAGTATTTTTTTCCTATTGACGAATGTACTGTACT TTTAAAGCATCACTACCAATTTGCATTATCCAAAGGCTTAATATTTTTTTTTGGTGAACTTAAATGAAGTGAGTTGCCAG AGTTTCTTGGAGGAACCTGTACCTGTGCAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAAAAACCCTGAA ATCTTGAAGGTAGTATGCTGGCCTTGCTTGGCTGCTAATAAGTTCATCACGTGTTCTTCTATGTCAATCTTGTTATATGC TAACTGTTAATTACATGTTGACATTTTGCAGATAATTCTCAGTGGTGAAGCAAGGCGGGCAAGGCAGGTAGTAAAAGTTC TAAACAGTGAAGGAAAGGTTATTGCATATGCAAAACCGCGTTGCCCAATGGTAATTTGTTGTATGATATATTATTGCCTG GACTGAGTGGAGCCTAGTTTTTTTTCCCTGAAGAAGCAGTGGAGCCTGATTTGATTCCTTTGTACTCTTTAGTGTCCTTT TCATCGTGTAACTTGATTGACCATGACACTTCTTTCTTGCAGATAAAAGGCAGTGATACATCAACAGCTGAATCAGGGTC TGAAACTGAAGATATAGCTTCTCCGAAAACAATGAAGAGTTACTCGCACCTTAGGTTGACCCCTGTTCGTGAGGAAGTAA GCGATGTCCTTGTGATCTGTTCTCATGTTTCTATTAAATAGCGGAGGTTTCAGTTGATGGACTGTAGGTCTTTTGTGTAC CCGTTTTCCCCTTAAATTTAATGGTAGCAAATTTTTTATTTTTCTTGGATTCCTATTATTCTGGGAGTTTAAGGGGTATT ATTTTAAATGTAGCTTTTCAAGGAGATTTGTTCATAGGATTTATCCATGGTCTATCCCAAACGCACAAATTATTTACAAG TTGTGTTCTTTGTCAGGCTAAGGTTGTTGGAAAGTCAAACTATGCTGGTAGTGGCAACTTGGCAGGGTATGACGAATACA TTCCGATGGTGGACAAAGCCGTTGATGCTGGCTGGAAGAAGCAAGCATTACTCCAGATCCAGAGGTCTCATAGTACAAAA GGTTAGCTTTAATTGGTATTTGTAGTAGACATGCCTTTTCTGGGGCTTATTCACCAAAAATAGATACAGTTATTTGAAAA AATAATCCGACACATCAAAATTCATTTTCAGCCATGACACTAATTGGTTCACTAACTATGGAATATGGAGGACATCTGAT GGATGTACATGTATTAATGTCTGGACTCCAGATCTCCATTTTGTAATATTTTCCCATTTTGGTATGATAAGAAAAGATTA TGTTCAATTAAATAATGAATTTTGGACTAATCCATGTTTGTTTGAAATTAGCTGATATTTTGATAGGCTTTATTGAAGAT ATGAACTTGGTTTTCTCTTAATGCTCATGTAATATCTTTTGGTATGTATGCTGCACACCATGCACCTGTTGCCATAAATA GCAATCCACTCCCTTGTTTTTAATTGCTATGAAGTTGCATGGCCCTCTCTTGACCCTTACAGGGATCTATGGAAAATCAA TTTATATCATCCCTTATATGTGTTGACACTTGACGCCACTTTTGAGTTTTATTAGAACATTTTATTGGCTAGATGCATTT CGTCTAAGCTTTGTCTGGTGCAACCAAGCAGTTCTCTTTATGAAAATGGCGCATTGCATCTTGCATACTTAATTTCTTCT AAGTTAGACACAAACCATTTCAGGGCCAGCACTTGAGAGTTTAAAGTCTTGGTATAGTTGATCCTTGACATGATATTTGT GCTTTGTCAATGCTTTGAGCACAAAAGGCTTTTGTTTGAAGCTTTGGTTTGCTTAGGAGATAAACAAGTCCAGAAGTCCT GGAACTGCACCTAAAAGCTTGAGCTTTTGGGAGAGTTGGTGCCTTGCTTGGTTTCTCGACTTAAATTAATGTAATTTGCT GAGGAAATATTAAATTGAAATTTCCATTACAGGAACACCTCCCCTTCCTGACACTCCAAAGGCTCCAGAAGGGATTCAAG CTCGGATTTGGGTAGCCGTGACCTTTTTCTTTTTAACCCTGTGGACTCTCTTCCTCTCAGTTGCATGTCGTGTGACCAAG AAACTCCCTACAGTATCATCTACTGATTATCTGAGAACTTCAGAGCCAACTCTTGATACAACAAATAAGGAAGACTCTGG TTCTTCTTCACTGACTGCAGCACATACTGAGGCAGATCTCCTATCCTCCATGATGAAAAGGTTAGGTGAGCTTGAAGAGA AGGTTGAAACTCTCCAATCTAAGCCATCGGAGATGCCTAATGAGAAAGAGGAATTGCTAAATGCTGCTGTCTGCCGGGTG GATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGTGGAATGCTATAATTTAGTTTTTCATTATCTTTAAAGAAACTG CAGTCGTGATGATGCATTTTATGCGTACATGTATTACATTGAAGTATTTTCAATTTTCTGTTATTTTTTCTTATTTCGTT TGTGATCTTTAAAATAGGCACCCCCTTATTTATGTTTGGGTGCATTTCCTAAATGTCGTATTATAGCTGTGGATGTAGTG AATGCATAGCTTCTCATTGTTTTGTTCACCTGAGCAATTTTCTGACGTTTGGGTTTTTTTGGATTGTGCAATAGGCTCTC TATGGAGCTTTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATCGCCAAGAAGAAGCTAAGCTACGGGTAAGTTGTCA CATGTATCTTTAGAACACAATTAAAACCTTATGGACATTGTTCGAATTCTTGATATCTGTTTGCTAATCAGAAAAAGAAG TTTTGCTGGTGACTTCTGTTGCTGCTGATAGAAAGAGAGATTCTGGAGGAGGATGTTTTCCAAACCACGTTGTTTCTATG GCGAGTTGACCTTGCAGTGATGTAAAATCTGAACACTGATTTTTAATATACGGGGTAAACTTTGATAAATTGTTTCAAGC TTGTGTGTAGCTAGAATGGCTTACCTATTGCTAACGCACAAGACTTTTTTTCTCCCTAGCTTTATTGTTTTTGCTGTGAC CACATTTGTTAATTGTTGTATTTGGTGTGATTAGTTGTTAATTAGTAAAGCGTTTGTTCTTCTGATCTTTCGGAACTTAC ATTGAATATTAATCTATTTGGGGGCATCTTATTTCAAAGGTAAACCTTAGTAAATTTGTGAGGCAAGCAAGCAGTGATAA TGTAATTTCCAAAGTAAAAGTGAATGGTTGTAAACGGGTTGTGGTCCAAACTACTGAGATGTTGATTCTATTGGCATCTT TTGGTAGTTGTATGGGTGAAGAATGAAGATCCATTTGATAAGTAAATATATGTAGTTGTAGATAGACGATTAGTTCAAAT TGTATATGCCTGATGTTTATCCATTGGGAGAGTTAATTCCACTATCATCGGGATGAAATTTCAATTATTGTTAGAGGGAT AAATTTATTGAGGGGATCAAGCTAAAGATTATGATAATGTGGTTCCATGACAATCAGAATAATGACCCGAGAATTTTATA TATTGTGAAGTATGGATTAGCAAGGATAAGTTAGAAAA
CDS sequence (LotjaGi3g1v0511100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTTATTTTGCTTATTGGAAATTTTGAAGATAAACATGTACTAAGGTCCCCAATTCTTTTATTGATGATACAGAC TCTCTGCCAAATGTTTATCATAAATGCTGGCCATGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCTA AAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTACCAAAGCAAACTGCTCGAAATAATCGATTCCAGTGAGTTGCCA GAGTTTCTTGGAGGAACCTGTACCTGTGCAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAAAAACCCTGA AATCTTGAAGATAATTCTCAGTGGTGAAGCAAGGCGGGCAAGGCAGGTAGTAAAAGTTCTAAACAGTGAAGGAAAGGTTA TTGCATATGCAAAACCGCGTTGCCCAATGATAAAAGGCAGTGATACATCAACAGCTGAATCAGGGTCTGAAACTGAAGAT ATAGCTTCTCCGAAAACAATGAAGAGTTACTCGCACCTTAGGTTGACCCCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAA GTCAAACTATGCTGGTAGTGGCAACTTGGCAGGGTATGACGAATACATTCCGATGGTGGACAAAGCCGTTGATGCTGGCT GGAAGAAGCAAGCATTACTCCAGATCCAGAGGTCTCATAGTACAAAAGGAACACCTCCCCTTCCTGACACTCCAAAGGCT CCAGAAGGGATTCAAGCTCGGATTTGGGTAGCCGTGACCTTTTTCTTTTTAACCCTGTGGACTCTCTTCCTCTCAGTTGC ATGTCGTGTGACCAAGAAACTCCCTACAGTATCATCTACTGATTATCTGAGAACTTCAGAGCCAACTCTTGATACAACAA ATAAGGAAGACTCTGGTTCTTCTTCACTGACTGCAGCACATACTGAGGCAGATCTCCTATCCTCCATGATGAAAAGGTTA GGTGAGCTTGAAGAGAAGGTTGAAACTCTCCAATCTAAGCCATCGGAGATGCCTAATGAGAAAGAGGAATTGCTAAATGC TGCTGTCTGCCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTCTATGGAGCTTTAATGAGGCAAG AAGAGCTGCTTGCTTACATTGATCGCCAAGAAGAAGCTAAGCTACGGAAAAAGAAGTTTTGCTGGTGA
Protein sequence (LotjaGi3g1v0511100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLILLIGNFEDKHVLRSPILLLMIQTLCQMFIINAGHGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDSSELP EFLGGTCTCADQGGCLRSDKGPWKNPEILKIILSGEARRARQVVKVLNSEGKVIAYAKPRCPMIKGSDTSTAESGSETED IASPKTMKSYSHLRLTPVREEAKVVGKSNYAGSGNLAGYDEYIPMVDKAVDAGWKKQALLQIQRSHSTKGTPPLPDTPKA PEGIQARIWVAVTFFFLTLWTLFLSVACRVTKKLPTVSSTDYLRTSEPTLDTTNKEDSGSSSLTAAHTEADLLSSMMKRL GELEEKVETLQSKPSEMPNEKEELLNAAVCRVDALEAELIATKKALYGALMRQEELLAYIDRQEEAKLRKKKFCW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 44 | 25 | - | – | |
| Gene3D | 25 | 125 | 101 | 3.7E-29 | ||
| PANTHER | 26 | 392 | 367 | 3.7E-162 | – | |
| ProSiteProfiles | 26 | 91 | 66 | 12.996 | ||
| PANTHER | 26 | 392 | 367 | 3.7E-162 | – | |
| CDD | 27 | 86 | 60 | 1.80047E-16 | ||
| Pfam | 27 | 86 | 60 | 2.2E-13 | ||
| SUPERFAMILY | 27 | 110 | 84 | 6.15E-24 | ||
| Phobius | 45 | 247 | 203 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| Phobius | 268 | 395 | 128 | - | – | |
| MobiDBLite | 284 | 304 | 21 | - | – | |
| Coils | 313 | 333 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0511100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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