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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0525900 |
| Transcript ID | LotjaGi3g1v0525900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Delta(24)-sterol reductase; TAIR: AT3G19820.1 cell elongation protein / DWARF1 / DIMINUTO (DIM); Swiss-Prot: sp|P93472|DIM_PEA Delta(24)-sterol reductase; TrEMBL-Plants: tr|I1LPL0|I1LPL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0525900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94258697..94260998) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTTTTGCTGAGGAATTTCTGTTGAATTTTTGTTTCTATGGTTTTTGTGTGTGTATCCAGCTCACTGTGAAGAGTTA TAGTTTGTACAATTTCAAAGGAGTTCTGAACACCTTTTTATTTTCTATCTTGCAGTAGGAAACCTTAGCAATGTCGGATC TTGAGGCTCCGCTGCGCCCCAAGAGGAAGAAGGTTTGGGTGGACTATTTTGTCAAGTTTAGATGGATCCTTGTCATTTTT GTGGTTCTTCCCATTTCCTTCACCATTTACTTCCTCATATACCTTGGGGATATGAAATCTGAGTGGAAGTCCTTTAAGAC GCGCCAGAAGGAGCATGATGAGAATGTCAAGAAGGTTGTCAAGCGTCTCAAACAGAGGAATCCGTCCAAGGATGGTCTTG TCTGCACGGCTCGTAAGCCCTGGATTGCGGTTGGGATGCGGAATGTGGACTACAAGAGGGCTCGCCATTTTGAAGTTGAT CTGTCTGCTTTCCGTAACATACTTGAGATCGACCAGGAACGGATGATTGCTAGGGTTGAGCCTCTTGTTAACATGGGGCA GATCACCAGGGTGACTGTGCCGATGAATCTTGCCCTCGCTGTGGTTGCGGAGCTGGACGATCTTACTGTTGGTGGCCTCA TTAACGGCTATGGGATCGAAGGAAGCTCCCACTTATATGGCCTGTTTGCTGATACCGTTGTGGCCTTTGAAGTTGTTCTA GCAGATGGTTCCCTTGTTAGAGCCACCAAGGAGAATGAGTACTCTGATCTATTTCATGCTATTCCTTGGTCTCAGGGAAC TCTTGGGTTTCTTGTTGCTGCTGAGATCAAGCTTATACCCATTAAGGAGTACATGAAGTTGACTTATCAACCTGTTGTTG GTAACCTGCAAGAGATTGCACAGGCATATACTGATTCTTTCTGTCCCAGAGATGGAGACCAGGATAATGAAGAGAAGGTT CCAGACTTTGTTGAAGGAATGGTTTATACACCAACAGAAGCTGTGATGATGACAGGGAGATATGCTTCAAAAGAGGAGGC CAAGAAGAAGGGGAATAAGATTAACAGTGTGGGGTGGTGGTTCAAACCCTGGTTCTATCAACATGCACAGTCAGCACTGA AGAAAGGATTGTTTGTAGAATACATTCCTACCAGAGAATATTACCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAG CTTATCCTTCCATTTGGTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTGCTCAA GGCAACTCAGGGCGAAGCTATAAGAAACTATTACCATGATATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGG TGGGAGATGCGATGGAATGGGTTCACCGTGAGATGGAGGTACTTTTTTCCTTTTATTAACCTTAATAACACTTTAAATGT TTTTTTTCAAACATTATTTGTTCAAGGGTAAGTCATTTAAAACTTAAAATTCTAGTTTCATACGTGCAAAAAGCTCATGC TAGGGCTAAGCTCTCACGGCTGTTTTGCAGTTAAAGCCCATTTTCATTTTCCATTATGATCTATCATAAAGTTACTGGTC CCATGGTCTTTTTTAACTCGTGAAGGAGTTTTACCTTTTTAGAAGTTATTGAGTTTTCTGCTTTCCCAAGTTTCTGGTGT TACTTATTGTCTGATAAGTAGTGCTAATTTCATAAAAATTATGCTATTATTTATTTCAATTCAAGCTGATACATCAGTAA GTTCTCTCAGGGATCCAGTTTTCATATATAATTCAGTTGGTGCTGGCCTGCATTTTGTTTCTTATTAGTGACTGTAAATA TATTAGGTATACCCCCTTTGGCTATGCCCACACAAGTTGTTCAAGCTGCCAGTCAAGACCATGATTTACCCAGAACCAGG CTTTGAACTGCATCGCAGGCAAGGAGACACACAAACTGCTCAAATGTACACAGATGTTGGAGTTTACTATGCACCAGGTC CTGTTTTAAGGGGTGAGGTATTTGATGGCGCAGAAGCAGTGCGTAAGATGGAGGACTGGTTGATTGAAAATCACGGTTTC CAGCCACAGTATGCTGTGTCTGAGCTGTCCGAGAAAAGCTTCTGGAGAATGTTTGATGCAGGTCTATATGAGCATGCTAG GAGGAAGTATGGAGCTATTGGAACCTTCATGAGTGTGTACTACAAATCAAAGAAAGGCAGGAAGACTGAGAAGGAGGTGC AGGAAGCGGAGCAAGCACACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGA
CDS sequence (LotjaGi3g1v0525900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGATCTTGAGGCTCCGCTGCGCCCCAAGAGGAAGAAGGTTTGGGTGGACTATTTTGTCAAGTTTAGATGGATCCT TGTCATTTTTGTGGTTCTTCCCATTTCCTTCACCATTTACTTCCTCATATACCTTGGGGATATGAAATCTGAGTGGAAGT CCTTTAAGACGCGCCAGAAGGAGCATGATGAGAATGTCAAGAAGGTTGTCAAGCGTCTCAAACAGAGGAATCCGTCCAAG GATGGTCTTGTCTGCACGGCTCGTAAGCCCTGGATTGCGGTTGGGATGCGGAATGTGGACTACAAGAGGGCTCGCCATTT TGAAGTTGATCTGTCTGCTTTCCGTAACATACTTGAGATCGACCAGGAACGGATGATTGCTAGGGTTGAGCCTCTTGTTA ACATGGGGCAGATCACCAGGGTGACTGTGCCGATGAATCTTGCCCTCGCTGTGGTTGCGGAGCTGGACGATCTTACTGTT GGTGGCCTCATTAACGGCTATGGGATCGAAGGAAGCTCCCACTTATATGGCCTGTTTGCTGATACCGTTGTGGCCTTTGA AGTTGTTCTAGCAGATGGTTCCCTTGTTAGAGCCACCAAGGAGAATGAGTACTCTGATCTATTTCATGCTATTCCTTGGT CTCAGGGAACTCTTGGGTTTCTTGTTGCTGCTGAGATCAAGCTTATACCCATTAAGGAGTACATGAAGTTGACTTATCAA CCTGTTGTTGGTAACCTGCAAGAGATTGCACAGGCATATACTGATTCTTTCTGTCCCAGAGATGGAGACCAGGATAATGA AGAGAAGGTTCCAGACTTTGTTGAAGGAATGGTTTATACACCAACAGAAGCTGTGATGATGACAGGGAGATATGCTTCAA AAGAGGAGGCCAAGAAGAAGGGGAATAAGATTAACAGTGTGGGGTGGTGGTTCAAACCCTGGTTCTATCAACATGCACAG TCAGCACTGAAGAAAGGATTGTTTGTAGAATACATTCCTACCAGAGAATATTACCACAGGCACACAAGGTGTTTGTATTG GGAGGGAAAGCTTATCCTTCCATTTGGTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTT CTCTGCTCAAGGCAACTCAGGGCGAAGCTATAAGAAACTATTACCATGATATGCATGTCATCCAGGACATGCTTGTTCCT TTGTACAAGGTGGGAGATGCGATGGAATGGGTTCACCGTGAGATGGAGGTATACCCCCTTTGGCTATGCCCACACAAGTT GTTCAAGCTGCCAGTCAAGACCATGATTTACCCAGAACCAGGCTTTGAACTGCATCGCAGGCAAGGAGACACACAAACTG CTCAAATGTACACAGATGTTGGAGTTTACTATGCACCAGGTCCTGTTTTAAGGGGTGAGGTATTTGATGGCGCAGAAGCA GTGCGTAAGATGGAGGACTGGTTGATTGAAAATCACGGTTTCCAGCCACAGTATGCTGTGTCTGAGCTGTCCGAGAAAAG CTTCTGGAGAATGTTTGATGCAGGTCTATATGAGCATGCTAGGAGGAAGTATGGAGCTATTGGAACCTTCATGAGTGTGT ACTACAAATCAAAGAAAGGCAGGAAGACTGAGAAGGAGGTGCAGGAAGCGGAGCAAGCACACCTTGAAACTGCATATGCA GAAGTTGATCAACCAGTAGACTGA
Protein sequence (LotjaGi3g1v0525900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDLEAPLRPKRKKVWVDYFVKFRWILVIFVVLPISFTIYFLIYLGDMKSEWKSFKTRQKEHDENVKKVVKRLKQRNPSK DGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDQERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTV GGLINGYGIEGSSHLYGLFADTVVAFEVVLADGSLVRATKENEYSDLFHAIPWSQGTLGFLVAAEIKLIPIKEYMKLTYQ PVVGNLQEIAQAYTDSFCPRDGDQDNEEKVPDFVEGMVYTPTEAVMMTGRYASKEEAKKKGNKINSVGWWFKPWFYQHAQ SALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRYLFGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVP LYKVGDAMEWVHREMEVYPLWLCPHKLFKLPVKTMIYPEPGFELHRRQGDTQTAQMYTDVGVYYAPGPVLRGEVFDGAEA VRKMEDWLIENHGFQPQYAVSELSEKSFWRMFDAGLYEHARRKYGAIGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYA EVDQPVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 561 | 561 | 0.0 | ||
| PANTHER | 1 | 561 | 561 | 0.0 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 23 | 46 | 24 | - | – | |
| ProSiteProfiles | 45 | 231 | 187 | 13.048 | ||
| Phobius | 47 | 567 | 521 | - | – | |
| SUPERFAMILY | 105 | 231 | 127 | 7.01E-30 | ||
| Pfam | 109 | 198 | 90 | 3.5E-15 | ||
| Gene3D | 110 | 232 | 123 | 1.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi3g1v0525900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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