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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016169
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 71 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.601s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0809870.1
LjCkx8 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356539470|ref|XP_003538221.1| chr3 9845762 9848884 -
2 domain predictions
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Lj3g3v3650360.1
LjCkx6 PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] gi|356542934|ref|XP_003539919.1| chr3 44514871 44518966 +
2 domain predictions
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Lj4g3v2171460.1
LjCkx2 PREDICTED: cytokinin dehydrogenase 3-like [Cicer arietinum] gi|502150402|ref|XP_004507936.1| chr4 29817085 29822610 +
2 domain predictions
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Lj4g3v2641050.1
LjCkx1 PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1| chr4 35942025 35944954 +
2 domain predictions
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Lj5g3v0434840.1
LjCkx7 PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 7-like [Glycine max] gi|356564029|ref|XP_003550259.1| chr5 4380475 4387632 -
2 domain predictions
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Lj5g3v0692300.1
LjCkx3 PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356558359|ref|XP_003547474.1| chr5 10137598 10141548 +
2 domain predictions
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Lj5g3v2238680.1
LjCkx5 PREDICTED: LOW QUALITY PROTEIN: cytokinin dehydrogenase 5-like [Glycine max] gi|356509660|ref|XP_003523564.1| chr5 32118144 32122298 +
2 domain predictions
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Lj6g3v1249630.1
LjCkx4 FAD linked oxidase, N-terminal [Medicago truncatula] gi|124360772|gb|ABN08744.1| chr6 15350730 15354064 -
2 domain predictions
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Lj0g3v0056099.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141966|ref|XP_004504726.1| chr0 18201352 18211981 -
2 domain predictions
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Lj0g3v0064539.1
n.a. PREDICTED: reticuline oxidase-like [Glycine max] gi|356574801|ref|XP_003555533.1| chr0 22328911 22330602 -
2 domain predictions
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Lj0g3v0120309.1
n.a. PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] gi|356553522|ref|XP_003545104.1| chr0 53447718 53449093 -
2 domain predictions
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Lj0g3v0166249.1
n.a. PREDICTED: reticuline oxidase-like [Cicer arietinum] gi|502116443|ref|XP_004495433.1| chr0 79059253 79060096 +
2 domain predictions
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Lj0g3v0267159.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502080207|ref|XP_004486493.1| chr0 138443376 138447223 -
2 domain predictions
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Lj0g3v0267169.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502080207|ref|XP_004486493.1| chr0 138444054 138447223 -
2 domain predictions
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Lj0g3v0304529.1
n.a. mitochondrial L-galactono-1,4-lactone dehydrogenase [Lotus japonicus] gi|91982114|gb|ABE68384.1| chr0 158621571 158625655 -
2 domain predictions
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Lj0g3v0360459.1
n.a. PREDICTED: cytokinin dehydrogenase 3-like [Glycine max] gi|356545727|ref|XP_003541287.1| chr0 189837718 189840862 +
2 domain predictions
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Lj1g3v4226830.1
n.a. PREDICTED: cytokinin dehydrogenase 1-like [Cicer arietinum] gi|502108374|ref|XP_004493454.1| chr1 49900784 49903713 +
2 domain predictions
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Lj1g3v4763480.1
n.a. PREDICTED: D-lactate dehydrogenase [cytochrome] gi|356505459|ref|XP_003521508.1| chr1 57083721 57094167 -
2 domain predictions
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Lj1g3v5060530.1
n.a. PREDICTED: L-gulonolactone oxidase-like [Glycine max] gi|356506098|ref|XP_003521824.1| chr1 61838648 61842807 -
2 domain predictions
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Lj1g3v5060540.1
n.a. PREDICTED: LOW QUALITY PROTEIN: L-gulonolactone oxidase-like, partial [Glycine max] gi|356571262|ref|XP_003553798.1| chr1 61855061 61857484 -
2 domain predictions
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Lj2g3v0286990.1
n.a. Reticuline oxidase-like protein [Medicago truncatula] gi|357475915|ref|XP_003608243.1| chr2 4881584 4883173 -
2 domain predictions
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Lj2g3v1728750.1
n.a. PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cicer arietinum] gi|502161240|ref|XP_004512090.1| chr2 26505075 26511668 -
2 domain predictions
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Lj3g3v0462000.1
n.a. PREDICTED: L-gulonolactone oxidase-like isoform X1 [Cicer arietinum] gi|502124309|ref|XP_004498473.1| chr3 5049553 5050222 +
2 domain predictions
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Lj3g3v1694660.1
n.a. PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| chr3 21618391 21625497 -
2 domain predictions
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Lj3g3v1932900.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356515398|ref|XP_003526387.1| chr3 24898818 24899972 +
2 domain predictions
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Lj3g3v2483050.1
n.a. PREDICTED: L-gulonolactone oxidase-like [Glycine max] gi|356560249|ref|XP_003548406.1| chr3 30634358 30640758 -
2 domain predictions
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Lj3g3v3511360.1
n.a. PREDICTED: delta(24)-sterol reductase-like [Glycine max] gi|356544574|ref|XP_003540724.1| chr3 42675492 42679325 +
2 domain predictions
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Lj4g3v0287320.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141956|ref|XP_004504721.1| chr4 3535656 3537662 -
2 domain predictions
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Lj4g3v0287330.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356512143|ref|XP_003524780.1| chr4 3539756 3542422 -
2 domain predictions
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Lj4g3v0288350.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502141960|ref|XP_004504723.1| chr4 3558917 3561610 -
2 domain predictions
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Lj4g3v0299460.1
n.a. PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] gi|356533127|ref|XP_003535119.1| chr4 3616612 3618691 -
2 domain predictions
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Lj4g3v0299470.1
n.a. PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1| chr4 3627824 3630739 +
2 domain predictions
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Lj4g3v0445580.1
n.a. FAD linked oxidase, N-terminal [Medicago truncatula] gi|87240744|gb|ABD32602.1| chr4 5903592 5905001 -
2 domain predictions
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Lj4g3v0447770.1
n.a. Reticuline oxidase-like protein [Medicago truncatula] gi|357475915|ref|XP_003608243.1| chr4 6016820 6018127 +
2 domain predictions
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Lj5g3v0931500.1
n.a. mitochondrial L-galactono-1,4-lactone dehydrogenase [Lotus japonicus] gi|91982114|gb|ABE68384.1| chr5 13975659 13989765 -
2 domain predictions
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Lj5g3v1208450.1
n.a. PREDICTED: reticuline oxidase-like [Glycine max] gi|356533725|ref|XP_003535410.1| chr5 19803987 19807373 +
2 domain predictions
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Lj5g3v1208460.1
n.a. PREDICTED: reticuline oxidase-like [Cicer arietinum] gi|502116443|ref|XP_004495433.1| chr5 19803987 19806173 +
2 domain predictions
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Lj6g3v1618310.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Glycine max] gi|356555938|ref|XP_003546286.1| chr6 18235689 18237627 +
2 domain predictions
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Lj6g3v1618320.1
n.a. PREDICTED: reticuline oxidase-like protein-like [Cicer arietinum] gi|502080207|ref|XP_004486493.1| chr6 18239717 18241893 +
2 domain predictions
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Lj6g3v1628420.1
n.a. Reticuline oxidase-like protein [Medicago truncatula] gi|357448669|ref|XP_003594610.1| chr6 18296600 18298494 -
2 domain predictions
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Lj6g3v1629440.1
n.a. PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Glycine max] gi|356558077|ref|XP_003547335.1| chr6 18306271 18309186 -
2 domain predictions
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LotjaGi1g1v0019100.1
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019100 LjG1.1_chr1 2370570 2381626 +
2 domain predictions
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LotjaGi1g1v0019100.2
n.a. DUF21 domain-containing protein; TAIR: AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein; Swiss-Prot: sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic; TrEMBL-Plants: tr|I1M6I6|I1M6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019100 LjG1.1_chr1 2372566 2379317 +
2 domain predictions
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LotjaGi1g1v0423200.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT1G75450.1 cytokinin oxidase 5; Swiss-Prot: sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5; TrEMBL-Plants: tr|A0A0U2UUJ0|A0A0U2UUJ0_LOTJA Cytokinin oxidase/dehydrogenase 5; Found in the gene: LotjaGi1g1v0423200 LjG1.1_chr1 91712580 91723816 -
2 domain predictions
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LotjaGi1g1v0624400.1
n.a. FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400 LjG1.1_chr1 117156258 117169706 -
2 domain predictions
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LotjaGi1g1v0624400.2
n.a. FAD-binding Berberine family protein; TAIR: AT1G34575.1 FAD-binding Berberine family protein; Swiss-Prot: sp|F4HV09|BBE14_ARATH Berberine bridge enzyme-like 14; TrEMBL-Plants: tr|A0A151QMW8|A0A151QMW8_CAJCA Reticuline oxidase-like protein; Found in the gene: LotjaGi1g1v0624400 LjG1.1_chr1 117159823 117167557 -
2 domain predictions
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LotjaGi1g1v0669700.1
n.a. Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT2G41510.1 cytokinin oxidase/dehydrogenase 1; Swiss-Prot: sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1; TrEMBL-Plants: tr|A0A0U2UHS9|A0A0U2UHS9_LOTJA Cytokinin oxidase/dehydrogenase 1; Found in the gene: LotjaGi1g1v0669700 LjG1.1_chr1 123336927 123340402 +
2 domain predictions
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LotjaGi1g1v0796200.1
n.a. L-gulonolactone oxidase; TAIR: AT2G46760.1 D-arabinono-1,4-lactone oxidase family protein; Swiss-Prot: sp|O81032|GGLO6_ARATH Probable L-gulonolactone oxidase 6; TrEMBL-Plants: tr|V7B0C2|V7B0C2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0796200 LjG1.1_chr1 136695380 136700318 -
2 domain predictions
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LotjaGi1g1v0796300.1
n.a. L-gulonolactone oxidase; TAIR: AT2G46760.1 D-arabinono-1,4-lactone oxidase family protein; Swiss-Prot: sp|O81032|GGLO6_ARATH Probable L-gulonolactone oxidase 6; TrEMBL-Plants: tr|I1NCQ4|I1NCQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796300 LjG1.1_chr1 136712197 136715035 -
2 domain predictions
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LotjaGi2g1v0385200.1
n.a. D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|G7KGB4|G7KGB4_MEDTR D-2-hydroxyglutarate dehydrogenase; Found in the gene: LotjaGi2g1v0385200 LjG1.1_chr2 88139507 88146463 -
2 domain predictions
 –