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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0534600 |
| Transcript ID | LotjaGi3g1v0534600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protease inhibitor/seed storage/lipid transfer family protein; TAIR: AT4G33550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9FIT2|NLTPE_ARATH Putative non-specific lipid-transfer protein 14; TrEMBL-Plants: tr|I3SEH0|I3SEH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0534600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95143952..95144912) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTATGTCTAGTTCCTGCTCCTGGTAATATTCTAGCTACATAAAAAGATAATTTTCAATTCTATGTCATTTCTTTCA CTTCCCACTCGTATATAAATGCAAACCAACTCATTGCATCGATGTAGGACTTCAAAGTTTAAACCATTTCCTGAGTTTGG TGTGACACTTTATAAACTGTGGAATTTCTTTGTGACGGAACAAACACAATCATGGCAACAACACTTAGCACTAGCTTGGC CATGGCAATTTTGTTGGTTGTTGCATCATTGATGTGTAACACAACCCAGGTTTCAGCTCAATGTGGAGCAAACGTTGGAG ACCTCATATCCCAGTGTGAAAAGTTTGTGCAGAAGGCCGGACCTACGATTCCGCCATCGCCGGGGTGCTGTGCAGTGCTG AAAAACGTGAATGTTCCATGCGCTTGCAGACTTATCACAAAAGATGTTGAGAAGTTAGTGAGTGTTCCAAAGGCAATATT TGTTGCTCGCTCTTGTGGATTGAATGTTCCAGCTGGAATGCAATGTGGATGTAAGTTCTTAATCTAGACATGTTTTGATT CAGTGTGGAAAAGTTAAAATCACAATGAACTGAAGCAAGTTGTCTTAGCTTTTATAACTATTCATTGTGAGTTTGGCTTC ATCGCGATTTTCGATCGTATATCCAAACATGCAGTCATTTCATTTGAAAGTCTTTTTTCAACTTTTTTAATGTATCTGTT GCAATGTCATTTGTTTCAGCTGTTAAAGTGCCGCCCAAGCCATGAAGTGATGAGCACCTTCTACTGCTTCTCCTCAGGTT GAATTGAGAATACAGCCCTCTCCATTTCCTGCAAAAATAAATAAGGATCACTTCATGTCACATTGTTGATTGTTGTATGT TCACTGAAGAACAATGTTGAAAATAATATGGGCTTGTTATTTTAACTCTTTCTTTCTTTTTCCAGTATACATGGCTATCA C
CDS sequence (LotjaGi3g1v0534600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACAACACTTAGCACTAGCTTGGCCATGGCAATTTTGTTGGTTGTTGCATCATTGATGTGTAACACAACCCAGGT TTCAGCTCAATGTGGAGCAAACGTTGGAGACCTCATATCCCAGTGTGAAAAGTTTGTGCAGAAGGCCGGACCTACGATTC CGCCATCGCCGGGGTGCTGTGCAGTGCTGAAAAACGTGAATGTTCCATGCGCTTGCAGACTTATCACAAAAGATGTTGAG AAGTTAGTGAGTGTTCCAAAGGCAATATTTGTTGCTCGCTCTTGTGGATTGAATGTTCCAGCTGGAATGCAATGTGGATG TAAGTTCTTAATCTAG
Protein sequence (LotjaGi3g1v0534600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTLSTSLAMAILLVVASLMCNTTQVSAQCGANVGDLISQCEKFVQKAGPTIPPSPGCCAVLKNVNVPCACRLITKDVE KLVSVPKAIFVARSCGLNVPAGMQCGCKFLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 7 | 108 | 102 | 1.8E-31 | – | |
| PANTHER | 7 | 108 | 102 | 1.8E-31 | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Pfam | 11 | 105 | 95 | 1.2E-12 | ||
| Phobius | 21 | 29 | 9 | - | – | |
| Gene3D | 27 | 105 | 79 | 5.7E-12 | – | |
| Phobius | 30 | 111 | 82 | - | – | |
| SMART | 31 | 105 | 75 | 0.006 | ||
| CDD | 31 | 100 | 70 | 3.23676E-13 | – | |
| SUPERFAMILY | 32 | 101 | 70 | 1.28E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0534600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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